Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46605 * 2 1 4 4 N 1.46502 * 109.47119 * 119.99875 * 2 1 3 5 5 S 1.65602 * 119.99684 * 265.00195 * 4 2 1 6 6 O 1.42104 * 106.39947 * 178.54057 * 5 4 2 7 7 O 1.42099 * 106.40519 * 311.45895 * 5 4 2 8 8 C 1.76199 * 107.22106 * 65.00170 * 5 4 2 9 9 H 1.08004 * 119.99854 * 359.97438 * 8 5 4 10 10 C 1.37874 * 119.99813 * 179.97438 * 8 5 4 11 11 N 1.31506 * 120.00378 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 119.99659 * 179.97438 * 10 8 5 13 13 H 1.48505 * 109.46921 * 89.99918 * 12 10 8 14 14 H 1.48499 * 109.47064 * 209.99597 * 12 10 8 15 15 H 1.48497 * 109.47058 * 329.99879 * 12 10 8 16 16 C 1.50695 * 109.47281 * 239.99707 * 2 1 3 17 17 C 1.38266 * 119.93520 * 279.72647 * 16 2 1 18 18 C 1.38173 * 120.09955 * 180.27683 * 17 16 2 19 19 C 1.38690 * 119.96745 * 359.97438 * 18 17 16 20 20 O 1.35934 * 120.06727 * 179.97438 * 19 18 17 21 21 C 1.35882 * 118.00036 * 0.58155 * 20 19 18 22 22 C 1.38760 * 120.05211 * 269.72281 * 21 20 19 23 23 C 1.38146 * 119.93533 * 179.71804 * 22 21 20 24 24 C 1.38273 * 120.05927 * 0.53432 * 23 22 21 25 25 C 1.38275 * 120.11439 * 359.76388 * 24 23 22 26 26 C 1.38136 * 120.06056 * 359.95513 * 25 24 23 27 27 C 1.38939 * 119.86556 * 0.02562 * 19 18 17 28 28 F 1.35099 * 120.04554 * 179.97438 * 27 19 18 29 29 C 1.38264 * 119.93423 * 99.99611 * 16 2 1 30 30 H 1.08999 * 109.47357 * 60.00439 * 1 2 3 31 31 H 1.09005 * 109.46787 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46893 * 299.99911 * 1 2 3 33 33 H 0.96992 * 120.00458 * 85.00291 * 4 2 1 34 34 H 0.97006 * 120.00321 * 180.02562 * 11 10 8 35 35 H 1.08002 * 119.95003 * 0.27250 * 17 16 2 36 36 H 1.07999 * 120.01975 * 179.97438 * 18 17 16 37 37 H 1.07995 * 120.03681 * 359.97438 * 22 21 20 38 38 H 1.07996 * 119.96915 * 180.27495 * 23 22 21 39 39 H 1.07993 * 119.94204 * 179.74392 * 24 23 22 40 40 H 1.08001 * 119.96982 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.02994 * 179.97438 * 26 25 24 42 42 H 1.07996 * 119.98032 * 359.70894 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4121 0.1773 2.5505 6 8 2.8124 -0.7696 3.5315 7 8 3.2436 1.2444 2.1156 8 6 0.9274 0.9148 3.1474 9 1 -0.0047 0.7493 2.6275 10 6 0.9556 1.7032 4.2782 11 7 2.0904 1.9043 4.9115 12 14 -0.6184 2.4856 4.9106 13 1 -1.2779 1.5646 5.8709 14 1 -0.2959 3.7644 5.5932 15 1 -1.5325 2.7498 3.7706 16 6 2.0324 -0.7104 -1.2304 17 6 2.0715 -2.0922 -1.2616 18 6 2.5369 -2.7470 -2.3858 19 6 2.9649 -2.0175 -3.4850 20 8 3.4236 -2.6596 -4.5919 21 6 3.4341 -4.0183 -4.5828 22 6 4.5535 -4.7016 -4.1295 23 6 4.5593 -6.0830 -4.1158 24 6 3.4553 -6.7847 -4.5636 25 6 2.3409 -6.1062 -5.0216 26 6 2.3276 -4.7249 -5.0320 27 6 2.9250 -0.6291 -3.4521 28 9 3.3415 0.0851 -4.5205 29 6 2.4585 0.0208 -2.3237 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.1111 -1.6561 1.1950 34 1 2.1102 2.4586 5.7073 35 1 1.7380 -2.6605 -0.4060 36 1 2.5673 -3.8263 -2.4087 37 1 5.4178 -4.1541 -3.7838 38 1 5.4286 -6.6153 -3.7590 39 1 3.4635 -7.8646 -4.5560 40 1 1.4800 -6.6567 -5.3712 41 1 1.4571 -4.1955 -5.3902 42 1 2.4265 1.1000 -2.2968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -136.544936 kcal Electronic energy + Delta-G solvation = -29793.426131 eV Core-core repulsion = 25357.998274 eV Total energy + Delta-G solvation = -4435.427858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -49.92706 -41.95846 -40.17880 -38.76154 -37.38314 -36.47261 -36.10062 -35.14083 -32.07833 -31.99999 -31.77986 -30.69782 -29.54892 -28.14966 -25.24038 -24.37961 -23.72704 -23.07686 -21.94126 -21.00435 -19.88984 -19.44340 -18.76613 -18.08537 -17.94635 -17.39999 -17.30984 -17.00738 -16.54745 -16.45201 -16.32242 -15.92681 -15.52938 -15.31679 -15.19995 -14.98791 -14.61915 -14.44408 -14.29059 -14.01664 -13.90654 -13.80135 -13.52267 -13.22147 -13.00677 -12.97686 -12.79728 -12.55797 -12.47624 -12.45471 -12.34441 -12.26464 -12.22889 -11.83579 -11.73256 -11.20719 -10.93670 -10.31044 -10.06781 -9.98755 -9.79946 -9.30324 -8.70840 -7.42215 0.00991 0.02016 0.02260 0.32438 0.41576 1.38299 1.38759 1.54225 1.97215 2.23955 2.39785 2.63687 2.75990 2.98826 3.08247 3.48190 3.68370 3.77720 3.90356 3.91999 3.95893 4.12809 4.20455 4.25335 4.28084 4.40475 4.43079 4.49132 4.50253 4.67720 4.75125 4.80164 4.90365 4.97994 5.00351 5.07720 5.13126 5.27999 5.35783 5.36635 5.47054 5.48885 5.53926 5.56273 5.83442 6.02051 6.38986 6.41586 6.84792 8.25631 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.002315 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.432604 B =12089.761338 C =12591.269073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.192 3.808 3 H 0.087 0.913 4 N -1.114 6.114 5 S 2.717 3.283 6 O -1.046 7.046 7 O -1.044 7.044 8 C -1.032 5.032 9 H 0.132 0.868 10 C 0.070 3.930 11 N -0.897 5.897 12 Si 0.988 3.012 13 H -0.257 1.257 14 H -0.269 1.269 15 H -0.243 1.243 16 C -0.086 4.086 17 C -0.077 4.077 18 C -0.157 4.157 19 C 0.081 3.919 20 O -0.270 6.270 21 C 0.052 3.948 22 C -0.138 4.138 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.105 4.105 26 C -0.133 4.133 27 C 0.059 3.941 28 F -0.141 7.141 29 C -0.109 4.109 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.297 0.703 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.133 0.867 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -15.558 -19.795 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.084 3.916 3 H 0.105 0.895 4 N -0.873 5.873 5 S 2.819 3.181 6 O -1.036 7.036 7 O -1.034 7.034 8 C -1.165 5.165 9 H 0.150 0.850 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.806 3.194 13 H -0.182 1.182 14 H -0.193 1.193 15 H -0.166 1.166 16 C -0.088 4.088 17 C -0.096 4.096 18 C -0.176 4.176 19 C 0.038 3.962 20 O -0.183 6.183 21 C 0.010 3.990 22 C -0.157 4.157 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.152 4.152 27 C 0.040 3.960 28 F -0.120 7.120 29 C -0.128 4.128 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.249 0.751 34 H 0.107 0.893 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.151 0.849 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.819 -15.102 -19.522 24.842 hybrid contribution -0.564 0.541 0.330 0.848 sum -3.383 -14.562 -19.192 24.327 Atomic orbital electron populations 1.22426 0.92658 1.04031 1.03648 1.19615 0.95463 0.95424 0.81053 0.89485 1.55535 1.84751 1.19223 1.27828 0.99963 0.75655 0.71925 0.70593 1.93314 1.85063 1.65055 1.60152 1.93310 1.70238 1.57390 1.82461 1.30987 1.17364 1.45517 1.22670 0.85015 1.25992 1.01721 0.92664 0.93868 1.70005 1.29046 1.34969 1.18836 0.85156 0.76865 0.77883 0.79454 1.18162 1.19332 1.16565 1.19769 1.00168 0.94233 0.94623 1.21055 0.97048 0.93384 0.98077 1.21232 1.02993 1.00987 0.92348 1.19273 0.98793 0.90246 0.87922 1.84404 1.79702 1.18625 1.35568 1.18965 0.96086 0.80273 1.03648 1.21578 0.98098 0.96000 1.00006 1.21412 1.00035 0.92432 0.98634 1.21704 0.92593 1.01937 0.96719 1.21433 0.99780 0.92612 0.98450 1.21578 0.97336 0.95692 1.00551 1.16997 1.06415 0.86264 0.86364 1.91470 1.88422 1.77965 1.54130 1.21031 0.98880 1.01997 0.90939 0.89579 0.90436 0.91626 0.75074 0.89308 0.82934 0.82969 0.85521 0.82995 0.82465 0.82561 0.84872 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 9.50 71.98 0.68 -3.73 16 2 C 0.19 6.00 3.11 44.24 0.14 6.14 16 3 H 0.09 3.02 7.36 -2.39 -0.02 3.00 16 4 N -1.11 -41.02 5.42 -172.52 -0.94 -41.96 16 5 S 2.72 140.82 5.00 -56.49 -0.28 140.54 16 6 O -1.05 -61.13 18.02 -128.00 -2.31 -63.43 16 7 O -1.04 -61.07 17.36 -128.00 -2.22 -63.29 16 8 C -1.03 -53.57 9.57 67.73 0.65 -52.92 16 9 H 0.13 5.94 5.61 -2.91 -0.02 5.92 16 10 C 0.07 3.78 5.46 84.66 0.46 4.24 16 11 N -0.90 -52.70 13.19 21.44 0.28 -52.42 16 12 Si 0.99 39.87 29.54 68.60 2.03 41.90 16 13 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 14 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 15 H -0.24 -8.95 7.11 99.48 0.71 -8.24 16 16 C -0.09 -2.31 4.96 -19.85 -0.10 -2.41 16 17 C -0.08 -1.80 9.15 22.26 0.20 -1.60 16 18 C -0.16 -3.53 9.20 22.36 0.21 -3.33 16 19 C 0.08 2.12 6.68 22.55 0.15 2.27 16 20 O -0.27 -7.05 9.85 -36.05 -0.35 -7.41 16 21 C 0.05 1.07 3.95 22.52 0.09 1.15 16 22 C -0.14 -2.46 9.89 22.37 0.22 -2.24 16 23 C -0.11 -1.32 10.04 22.26 0.22 -1.09 16 24 C -0.11 -1.09 10.04 22.29 0.22 -0.87 16 25 C -0.10 -1.16 10.04 22.25 0.22 -0.94 16 26 C -0.13 -2.17 9.92 22.37 0.22 -1.94 16 27 C 0.06 1.65 7.31 22.46 0.16 1.82 16 28 F -0.14 -4.18 17.11 44.97 0.77 -3.41 16 29 C -0.11 -2.91 9.64 22.30 0.21 -2.70 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.95 5.74 -2.39 -0.01 1.93 16 33 H 0.41 12.83 7.07 -96.75 -0.68 12.14 16 34 H 0.30 15.75 8.31 -92.70 -0.77 14.98 16 35 H 0.15 2.97 6.80 -2.91 -0.02 2.95 16 36 H 0.15 2.90 6.68 -2.91 -0.02 2.88 16 37 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 40 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.16 3.77 8.03 -2.91 -0.02 3.75 16 Total: -1.00 -78.26 377.45 1.35 -76.91 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.40 Total: 30.74 kcal Atomic # 6 Polarization: -62.13 SS G_CDS: 3.98 Total: -58.16 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -0.65 Total: -94.38 kcal Atomic # 8 Polarization: -129.25 SS G_CDS: -4.88 Total: -134.13 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.77 Total: -3.41 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Atomic # 16 Polarization: 140.82 SS G_CDS: -0.28 Total: 140.54 kcal Total: -78.26 1.35 -76.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.637 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds