Wall clock time and date at job start Tue Mar 31 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47130 * 269.99869 * 3 2 1 5 5 H 1.48506 * 109.47176 * 29.99616 * 3 2 1 6 6 H 1.48508 * 109.47435 * 149.99698 * 3 2 1 7 7 C 1.37874 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00165 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00285 * 180.02562 * 7 2 1 10 10 O 1.42096 * 106.40357 * 66.46017 * 9 7 2 11 11 O 1.42096 * 106.40105 * 293.54041 * 9 7 2 12 12 N 1.65599 * 107.22193 * 179.97438 * 9 7 2 13 13 C 1.46509 * 119.99515 * 64.99671 * 12 9 7 14 14 C 1.52999 * 109.46747 * 165.00183 * 13 12 9 15 15 C 1.50699 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.38276 * 119.92917 * 90.00123 * 15 14 13 17 17 C 1.38166 * 120.09411 * 179.97438 * 16 15 14 18 18 C 1.38693 * 119.97212 * 359.97438 * 17 16 15 19 19 O 1.35933 * 120.06977 * 180.02562 * 18 17 16 20 20 C 1.35886 * 117.99734 * 6.21634 * 19 18 17 21 21 C 1.38760 * 120.05724 * 67.64687 * 20 19 18 22 22 C 1.38133 * 119.93943 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.05967 * 359.97438 * 22 21 20 24 24 C 1.38278 * 120.11641 * 0.26974 * 23 22 21 25 25 C 1.38134 * 120.05570 * 359.49254 * 24 23 22 26 26 C 1.38937 * 119.86364 * 0.27722 * 18 17 16 27 27 F 1.35103 * 120.04645 * 179.72409 * 26 18 17 28 28 C 1.38254 * 119.93686 * 269.98043 * 15 14 13 29 29 H 0.96998 * 120.00229 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00659 * 245.00086 * 12 9 7 31 31 H 1.08995 * 109.47065 * 45.00143 * 13 12 9 32 32 H 1.08998 * 109.47176 * 285.00167 * 13 12 9 33 33 H 1.09004 * 109.47091 * 60.00198 * 14 13 12 34 34 H 1.09004 * 109.46963 * 300.00196 * 14 13 12 35 35 H 1.07999 * 119.95286 * 359.96002 * 16 15 14 36 36 H 1.08003 * 120.01452 * 179.97438 * 17 16 15 37 37 H 1.07996 * 120.03100 * 359.95397 * 21 20 19 38 38 H 1.08000 * 119.97389 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.94651 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.96930 * 179.72966 * 24 23 22 41 41 H 1.08006 * 120.02948 * 180.24981 * 25 24 23 42 42 H 1.07998 * 119.98624 * 0.03932 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1673 -0.6493 1.2509 11 8 4.1682 -0.6499 -1.2484 12 7 4.2568 -2.7758 0.0025 13 6 3.9618 -3.6349 -1.1470 14 6 4.8206 -4.8990 -1.0725 15 6 4.5168 -5.7830 -2.2545 16 6 5.2377 -5.6407 -3.4259 17 6 4.9623 -6.4498 -4.5115 18 6 3.9619 -7.4066 -4.4265 19 8 3.6897 -8.2040 -5.4932 20 6 4.5046 -8.1193 -6.5773 21 6 5.8208 -8.5503 -6.4929 22 6 6.6468 -8.4635 -7.5966 23 6 6.1630 -7.9483 -8.7850 24 6 4.8531 -7.5135 -8.8705 25 6 4.0215 -7.6025 -7.7711 26 6 3.2350 -7.5449 -3.2506 27 9 2.2559 -8.4719 -3.1656 28 6 3.5182 -6.7351 -2.1655 29 1 -0.4850 0.8400 -0.0004 30 1 4.7391 -3.1335 0.7641 31 1 4.1850 -3.0978 -2.0688 32 1 2.9074 -3.9107 -1.1334 33 1 4.5974 -5.4361 -0.1507 34 1 5.8751 -4.6231 -1.0861 35 1 6.0169 -4.8958 -3.4924 36 1 5.5259 -6.3372 -5.4259 37 1 6.1992 -8.9528 -5.5649 38 1 7.6715 -8.7984 -7.5314 39 1 6.8105 -7.8809 -9.6467 40 1 4.4789 -7.1074 -9.7986 41 1 2.9973 -7.2665 -7.8395 42 1 2.9565 -6.8440 -1.2495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:15 Heat of formation + Delta-G solvation = -104.507520 kcal Electronic energy + Delta-G solvation = -29057.973487 eV Core-core repulsion = 24623.934876 eV Total energy + Delta-G solvation = -4434.038611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 4.50 seconds Orbital eigenvalues (eV) -48.91419 -41.20533 -39.20324 -37.91669 -35.72184 -35.25408 -34.42878 -33.02571 -31.94610 -31.44959 -31.01413 -30.25343 -27.57811 -26.39990 -24.11017 -23.38444 -22.92694 -22.40513 -21.20743 -19.12749 -19.08567 -17.72296 -17.40427 -17.02153 -16.79071 -16.54994 -16.48607 -15.72548 -15.63188 -15.48219 -15.04224 -14.67799 -14.60066 -14.32633 -14.08155 -13.92578 -13.79146 -13.59134 -13.31188 -13.06950 -12.89528 -12.80695 -12.46853 -12.20770 -12.12219 -11.68531 -11.60492 -11.39245 -11.29676 -11.27217 -11.01431 -10.73341 -10.62017 -10.49374 -9.84385 -9.47054 -9.24814 -9.24440 -9.20525 -9.08582 -8.59751 -8.31457 -6.79578 -5.33463 0.62589 0.85747 0.94471 0.99331 2.08169 2.67701 3.07807 3.18318 3.27224 3.29393 3.36390 3.95714 3.98055 4.26319 4.43333 4.45123 4.50121 4.60502 4.63936 4.65748 4.82870 4.90537 5.00326 5.04682 5.05757 5.17480 5.23435 5.36288 5.45822 5.51641 5.61766 5.72713 5.84536 5.87738 5.89869 5.93804 6.01665 6.02019 6.11895 6.19301 6.26172 6.39971 6.56350 6.58700 7.19295 7.48185 7.71901 8.21481 8.71552 10.32817 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.002059 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.879318 B =13595.536086 C =13919.036652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.803 3.197 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.015 5.015 8 H 0.121 0.879 9 S 2.677 3.323 10 O -1.009 7.009 11 O -1.012 7.012 12 N -1.126 6.126 13 C 0.129 3.871 14 C -0.086 4.086 15 C -0.076 4.076 16 C -0.084 4.084 17 C -0.165 4.165 18 C 0.081 3.919 19 O -0.252 6.252 20 C 0.086 3.914 21 C -0.139 4.139 22 C -0.104 4.104 23 C -0.122 4.122 24 C -0.103 4.103 25 C -0.120 4.120 26 C 0.080 3.920 27 F -0.132 7.132 28 C -0.112 4.112 29 H 0.280 0.720 30 H 0.405 0.595 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.125 -18.381 -13.932 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.623 3.377 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.139 0.861 9 S 2.778 3.222 10 O -0.999 6.999 11 O -1.002 7.002 12 N -0.882 5.882 13 C 0.002 3.998 14 C -0.125 4.125 15 C -0.077 4.077 16 C -0.103 4.103 17 C -0.183 4.183 18 C 0.037 3.963 19 O -0.164 6.164 20 C 0.044 3.956 21 C -0.157 4.157 22 C -0.122 4.122 23 C -0.140 4.140 24 C -0.121 4.121 25 C -0.138 4.138 26 C 0.060 3.940 27 F -0.110 7.110 28 C -0.131 4.131 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.237 -17.652 -14.102 25.694 hybrid contribution -0.479 0.075 0.237 0.540 sum 11.758 -17.578 -13.865 25.287 Atomic orbital electron populations 1.69989 1.06614 1.29030 1.39646 1.24436 0.94787 0.98849 0.88634 0.87846 0.83561 0.84516 0.81777 1.17052 1.17989 1.14198 1.30455 1.15684 1.02138 1.66684 0.86109 1.01285 0.77275 0.70372 0.73223 1.93475 1.85520 1.75869 1.45064 1.93402 1.85039 1.76094 1.45627 1.55491 1.74398 1.31563 1.26717 1.21102 0.99015 0.90329 0.89335 1.20828 1.01303 0.94766 0.95615 1.19620 0.95681 0.96347 0.96057 1.21006 0.99498 0.98207 0.91544 1.21191 0.99222 0.97064 1.00854 1.19084 0.97262 0.93340 0.86595 1.84414 1.51687 1.58254 1.22065 1.18735 0.90044 1.00169 0.86634 1.21511 0.93106 1.00822 1.00292 1.21071 0.99829 0.98978 0.92364 1.21289 0.95895 0.98767 0.98030 1.21102 0.93636 0.99110 0.98251 1.21250 1.01343 0.98688 0.92546 1.16901 0.91109 0.93198 0.92805 1.91512 1.59562 1.63400 1.96558 1.20985 0.98805 0.95345 0.97925 0.90922 0.76305 0.90337 0.91539 0.89915 0.89811 0.84476 0.84424 0.85152 0.85216 0.85406 0.84996 0.84793 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.79 13.96 55.43 0.77 -23.01 16 2 C 0.15 4.36 5.47 -17.82 -0.10 4.26 16 3 Si 0.80 20.51 26.54 -169.99 -4.51 16.00 16 4 H -0.25 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.22 -5.69 5.61 56.52 0.32 -5.38 16 7 C -1.02 -27.90 10.26 30.60 0.31 -27.59 16 8 H 0.12 3.34 8.06 -52.49 -0.42 2.92 16 9 S 2.68 64.77 4.24 -107.50 -0.46 64.31 16 10 O -1.01 -26.45 16.02 -57.17 -0.92 -27.36 16 11 O -1.01 -26.27 16.30 -57.17 -0.93 -27.21 16 12 N -1.13 -19.97 6.00 -10.61 -0.06 -20.04 16 13 C 0.13 1.98 6.21 -4.04 -0.03 1.96 16 14 C -0.09 -0.95 5.48 -27.88 -0.15 -1.10 16 15 C -0.08 -0.84 5.13 -104.60 -0.54 -1.38 16 16 C -0.08 -0.88 9.69 -39.59 -0.38 -1.26 16 17 C -0.16 -1.75 8.80 -39.44 -0.35 -2.09 16 18 C 0.08 0.98 6.55 -39.15 -0.26 0.72 16 19 O -0.25 -3.12 9.86 -3.68 -0.04 -3.16 16 20 C 0.09 0.87 4.71 -39.20 -0.18 0.69 16 21 C -0.14 -1.16 8.39 -39.43 -0.33 -1.49 16 22 C -0.10 -0.69 10.04 -39.61 -0.40 -1.08 16 23 C -0.12 -0.75 10.04 -39.55 -0.40 -1.15 16 24 C -0.10 -0.70 10.04 -39.60 -0.40 -1.10 16 25 C -0.12 -1.05 9.99 -39.43 -0.39 -1.45 16 26 C 0.08 1.01 7.31 -39.29 -0.29 0.72 16 27 F -0.13 -1.82 17.11 2.25 0.04 -1.78 16 28 C -0.11 -1.28 9.67 -39.54 -0.38 -1.66 16 29 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.41 5.94 8.65 -34.47 -0.30 5.64 16 31 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 1.29 6.21 -52.48 -0.33 0.97 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -34.50 377.33 -9.56 -44.06 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.89 Total: 5.50 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -4.26 Total: -33.00 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.71 Total: -43.05 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -1.88 Total: -57.73 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.51 Total: 16.00 kcal Atomic # 16 Polarization: 64.77 SS G_CDS: -0.46 Total: 64.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.50 -9.56 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.445 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.50 seconds