Wall clock time and date at job start Tue Mar 31 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48499 * 109.47130 * 269.99869 * 3 2 1 5 5 H 1.48506 * 109.47176 * 29.99616 * 3 2 1 6 6 H 1.48508 * 109.47435 * 149.99698 * 3 2 1 7 7 C 1.37874 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00165 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00285 * 180.02562 * 7 2 1 10 10 O 1.42096 * 106.40357 * 66.46017 * 9 7 2 11 11 O 1.42096 * 106.40105 * 293.54041 * 9 7 2 12 12 N 1.65599 * 107.22193 * 179.97438 * 9 7 2 13 13 C 1.46509 * 119.99515 * 64.99671 * 12 9 7 14 14 C 1.52999 * 109.46747 * 165.00183 * 13 12 9 15 15 C 1.50699 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.38276 * 119.92917 * 90.00123 * 15 14 13 17 17 C 1.38166 * 120.09411 * 179.97438 * 16 15 14 18 18 C 1.38693 * 119.97212 * 359.97438 * 17 16 15 19 19 O 1.35933 * 120.06977 * 180.02562 * 18 17 16 20 20 C 1.35886 * 117.99734 * 6.21634 * 19 18 17 21 21 C 1.38760 * 120.05724 * 67.64687 * 20 19 18 22 22 C 1.38133 * 119.93943 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.05967 * 359.97438 * 22 21 20 24 24 C 1.38278 * 120.11641 * 0.26974 * 23 22 21 25 25 C 1.38134 * 120.05570 * 359.49254 * 24 23 22 26 26 C 1.38937 * 119.86364 * 0.27722 * 18 17 16 27 27 F 1.35103 * 120.04645 * 179.72409 * 26 18 17 28 28 C 1.38254 * 119.93686 * 269.98043 * 15 14 13 29 29 H 0.96998 * 120.00229 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00659 * 245.00086 * 12 9 7 31 31 H 1.08995 * 109.47065 * 45.00143 * 13 12 9 32 32 H 1.08998 * 109.47176 * 285.00167 * 13 12 9 33 33 H 1.09004 * 109.47091 * 60.00198 * 14 13 12 34 34 H 1.09004 * 109.46963 * 300.00196 * 14 13 12 35 35 H 1.07999 * 119.95286 * 359.96002 * 16 15 14 36 36 H 1.08003 * 120.01452 * 179.97438 * 17 16 15 37 37 H 1.07996 * 120.03100 * 359.95397 * 21 20 19 38 38 H 1.08000 * 119.97389 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.94651 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.96930 * 179.72966 * 24 23 22 41 41 H 1.08006 * 120.02948 * 180.24981 * 25 24 23 42 42 H 1.07998 * 119.98624 * 0.03932 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1673 -0.6493 1.2509 11 8 4.1682 -0.6499 -1.2484 12 7 4.2568 -2.7758 0.0025 13 6 3.9618 -3.6349 -1.1470 14 6 4.8206 -4.8990 -1.0725 15 6 4.5168 -5.7830 -2.2545 16 6 5.2377 -5.6407 -3.4259 17 6 4.9623 -6.4498 -4.5115 18 6 3.9619 -7.4066 -4.4265 19 8 3.6897 -8.2040 -5.4932 20 6 4.5046 -8.1193 -6.5773 21 6 5.8208 -8.5503 -6.4929 22 6 6.6468 -8.4635 -7.5966 23 6 6.1630 -7.9483 -8.7850 24 6 4.8531 -7.5135 -8.8705 25 6 4.0215 -7.6025 -7.7711 26 6 3.2350 -7.5449 -3.2506 27 9 2.2559 -8.4719 -3.1656 28 6 3.5182 -6.7351 -2.1655 29 1 -0.4850 0.8400 -0.0004 30 1 4.7391 -3.1335 0.7641 31 1 4.1850 -3.0978 -2.0688 32 1 2.9074 -3.9107 -1.1334 33 1 4.5974 -5.4361 -0.1507 34 1 5.8751 -4.6231 -1.0861 35 1 6.0169 -4.8958 -3.4924 36 1 5.5259 -6.3372 -5.4259 37 1 6.1992 -8.9528 -5.5649 38 1 7.6715 -8.7984 -7.5314 39 1 6.8105 -7.8809 -9.6467 40 1 4.4789 -7.1074 -9.7986 41 1 2.9973 -7.2665 -7.8395 42 1 2.9565 -6.8440 -1.2495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:14 Heat of formation + Delta-G solvation = -127.490232 kcal Electronic energy + Delta-G solvation = -29058.970092 eV Core-core repulsion = 24623.934876 eV Total energy + Delta-G solvation = -4435.035216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.91451 -41.97309 -39.96961 -38.64922 -37.65817 -36.58222 -36.44904 -35.16285 -32.96382 -32.04357 -31.80364 -30.97300 -28.64087 -28.48176 -25.01079 -24.19650 -23.63983 -23.19783 -22.10492 -21.03056 -19.84640 -19.47388 -18.66515 -18.30670 -17.90952 -17.42643 -17.35277 -17.21478 -16.83453 -16.44890 -16.34674 -15.88342 -15.50000 -15.37764 -15.28911 -15.12510 -15.03374 -14.87159 -14.47508 -14.36208 -14.04141 -13.75131 -13.49444 -13.40126 -13.33452 -13.02949 -12.80661 -12.66497 -12.56540 -12.52283 -12.43298 -12.27327 -12.12421 -11.84906 -11.70043 -11.31595 -11.18047 -10.20516 -10.06812 -9.97663 -9.82256 -9.18985 -8.94219 -7.49697 -0.05678 0.05590 0.13444 0.25736 0.31919 1.07249 1.16618 1.23777 1.91027 1.96235 2.40855 2.45590 2.63604 2.75756 3.10973 3.34853 3.62277 3.75319 3.88205 3.91606 3.98518 4.09102 4.20020 4.20601 4.25583 4.29807 4.34297 4.42780 4.49442 4.64548 4.74841 4.77441 4.85812 4.94810 4.99967 5.05138 5.11721 5.26890 5.33649 5.36982 5.41424 5.48917 5.50544 5.61497 5.85212 6.03987 6.39481 6.42166 6.57019 8.23479 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.002059 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.879318 B =13595.536086 C =13919.036652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.105 3.895 3 Si 0.827 3.173 4 H -0.239 1.239 5 H -0.224 1.224 6 H -0.226 1.226 7 C -1.038 5.038 8 H 0.105 0.895 9 S 2.702 3.298 10 O -1.029 7.029 11 O -1.029 7.029 12 N -1.108 6.108 13 C 0.119 3.881 14 C -0.074 4.074 15 C -0.082 4.082 16 C -0.079 4.079 17 C -0.163 4.163 18 C 0.074 3.926 19 O -0.272 6.272 20 C 0.056 3.944 21 C -0.146 4.146 22 C -0.103 4.103 23 C -0.117 4.117 24 C -0.104 4.104 25 C -0.137 4.137 26 C 0.051 3.949 27 F -0.146 7.146 28 C -0.111 4.111 29 H 0.290 0.710 30 H 0.423 0.577 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.129 0.871 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.691 -18.334 -14.890 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.111 4.111 3 Si 0.644 3.356 4 H -0.163 1.163 5 H -0.146 1.146 6 H -0.148 1.148 7 C -1.170 5.170 8 H 0.123 0.877 9 S 2.801 3.199 10 O -1.019 7.019 11 O -1.018 7.018 12 N -0.869 5.869 13 C -0.007 4.007 14 C -0.113 4.113 15 C -0.083 4.083 16 C -0.097 4.097 17 C -0.182 4.182 18 C 0.030 3.970 19 O -0.185 6.185 20 C 0.015 3.985 21 C -0.165 4.165 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.155 4.155 26 C 0.032 3.968 27 F -0.124 7.124 28 C -0.130 4.130 29 H 0.100 0.900 30 H 0.259 0.741 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.777 -17.601 -15.048 27.470 hybrid contribution -1.245 -0.072 0.425 1.317 sum 13.532 -17.673 -14.623 26.632 Atomic orbital electron populations 1.70023 1.07609 1.30408 1.40747 1.25211 0.95614 1.01640 0.88626 0.87455 0.82921 0.82654 0.82524 1.16288 1.14618 1.14784 1.31044 1.18420 1.01522 1.66028 0.87678 1.00368 0.75445 0.71793 0.72280 1.93440 1.85142 1.77528 1.45797 1.93376 1.84589 1.77572 1.46295 1.54936 1.73790 1.29856 1.28326 1.21339 0.99781 0.91716 0.87888 1.20752 1.01557 0.92509 0.96456 1.19654 0.95856 0.96389 0.96448 1.21311 0.99469 0.97996 0.90951 1.21314 0.98819 0.96561 1.01463 1.19312 0.97447 0.93655 0.86568 1.84394 1.52776 1.58567 1.22750 1.19045 0.90891 1.02248 0.86350 1.21603 0.92650 1.01037 1.01193 1.21413 1.00713 0.98120 0.91787 1.21687 0.95836 0.97197 0.98766 1.21413 0.93832 0.98574 0.98333 1.21392 1.01698 0.99435 0.93011 1.17203 0.91755 0.94009 0.93855 1.91465 1.60243 1.64044 1.96691 1.21158 0.98839 0.95055 0.97949 0.89964 0.74122 0.91097 0.92356 0.87994 0.87593 0.82276 0.83300 0.85122 0.82669 0.82488 0.82807 0.85267 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.92 13.96 21.45 0.30 -49.62 16 2 C 0.11 6.04 5.47 84.65 0.46 6.50 16 3 Si 0.83 40.90 26.54 68.60 1.82 42.72 16 4 H -0.24 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.22 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.23 -11.33 5.61 99.48 0.56 -10.77 16 7 C -1.04 -57.46 10.26 67.73 0.69 -56.77 16 8 H 0.11 5.96 8.06 -2.91 -0.02 5.93 16 9 S 2.70 128.17 4.24 -56.49 -0.24 127.93 16 10 O -1.03 -52.71 16.02 -128.00 -2.05 -54.76 16 11 O -1.03 -52.26 16.30 -128.00 -2.09 -54.35 16 12 N -1.11 -37.31 6.00 -187.48 -1.12 -38.44 16 13 C 0.12 3.47 6.21 86.38 0.54 4.00 16 14 C -0.07 -1.43 5.48 29.85 0.16 -1.27 16 15 C -0.08 -1.68 5.13 -19.85 -0.10 -1.79 16 16 C -0.08 -1.50 9.69 22.26 0.22 -1.29 16 17 C -0.16 -3.34 8.80 22.36 0.20 -3.14 16 18 C 0.07 1.84 6.55 22.55 0.15 1.98 16 19 O -0.27 -7.09 9.86 -36.09 -0.36 -7.44 16 20 C 0.06 1.15 4.71 22.52 0.11 1.26 16 21 C -0.15 -2.34 8.39 22.37 0.19 -2.16 16 22 C -0.10 -1.11 10.04 22.25 0.22 -0.89 16 23 C -0.12 -1.12 10.04 22.29 0.22 -0.89 16 24 C -0.10 -1.24 10.04 22.25 0.22 -1.02 16 25 C -0.14 -2.41 9.99 22.37 0.22 -2.19 16 26 C 0.05 1.34 7.31 22.46 0.16 1.51 16 27 F -0.15 -4.25 17.11 44.97 0.77 -3.48 16 28 C -0.11 -2.50 9.67 22.30 0.22 -2.28 16 29 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.42 11.30 8.65 -96.75 -0.84 10.47 16 31 H 0.07 2.19 7.75 -2.39 -0.02 2.17 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 34 H 0.11 1.63 8.09 -2.38 -0.02 1.61 16 35 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.15 2.65 6.21 -2.91 -0.02 2.64 16 37 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 40 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 41 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -74.98 377.33 1.00 -73.98 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.08 Total: 21.88 kcal Atomic # 6 Polarization: -62.31 SS G_CDS: 3.88 Total: -58.42 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -0.83 Total: -88.06 kcal Atomic # 8 Polarization: -112.06 SS G_CDS: -4.49 Total: -116.55 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.77 Total: -3.48 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.82 Total: 42.72 kcal Atomic # 16 Polarization: 128.17 SS G_CDS: -0.24 Total: 127.93 kcal Total: -74.98 1.00 -73.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.507 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds