Wall clock time and date at job start Tue Mar 31 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 109.46621 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00307 * 2 1 3 5 5 C 1.50698 * 109.46771 * 185.00232 * 4 2 1 6 6 C 1.38269 * 119.96910 * 270.23060 * 5 4 2 7 7 C 1.38190 * 120.04470 * 180.23571 * 6 5 4 8 8 C 1.38455 * 119.98214 * 359.50794 * 7 6 5 9 9 F 1.35104 * 120.03155 * 180.23537 * 8 7 6 10 10 C 1.38527 * 119.94183 * 0.26111 * 8 7 6 11 11 Br 1.89099 * 120.02185 * 180.02562 * 10 8 7 12 12 C 1.38214 * 119.97532 * 89.99653 * 5 4 2 13 13 N 1.46501 * 109.47005 * 240.00360 * 2 1 3 14 14 S 1.65594 * 120.00125 * 94.99897 * 13 2 1 15 15 O 1.42101 * 106.40425 * 178.54133 * 14 13 2 16 16 O 1.42111 * 106.40330 * 311.45856 * 14 13 2 17 17 C 1.76198 * 107.21965 * 64.99657 * 14 13 2 18 18 H 1.08000 * 119.99750 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00184 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99859 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00001 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46713 * 120.00253 * 21 19 17 24 24 H 1.48499 * 109.47061 * 239.99957 * 21 19 17 25 25 H 1.08994 * 109.47539 * 59.99764 * 1 2 3 26 26 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47128 * 299.99709 * 1 2 3 28 28 H 1.08995 * 109.47513 * 65.00238 * 4 2 1 29 29 H 1.09003 * 109.46713 * 304.99810 * 4 2 1 30 30 H 1.07997 * 119.98027 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.01169 * 179.79344 * 7 6 5 32 32 H 1.08004 * 119.98873 * 0.02562 * 12 5 4 33 33 H 0.96998 * 119.99591 * 275.00077 * 13 2 1 34 34 H 0.97000 * 120.00273 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.3288 -1.5795 0.7108 7 6 5.7061 -1.4861 0.7722 8 6 6.2988 -0.4204 1.4281 9 9 7.6453 -0.3256 1.4846 10 6 5.5099 0.5482 2.0267 11 35 6.3169 2.0050 2.9224 12 6 4.1317 0.4494 1.9682 13 7 2.0184 -0.6905 -1.1962 14 16 2.4122 0.1773 -2.5505 15 8 2.8776 -0.7633 -3.5086 16 8 1.3246 1.0594 -2.7922 17 6 3.7927 1.1911 -2.1372 18 1 4.2103 1.1552 -1.1418 19 6 4.3406 2.0296 -3.0847 20 7 3.8324 2.0730 -4.2969 21 14 5.8046 3.1039 -2.6467 22 1 6.1841 2.8699 -1.2303 23 1 6.9499 2.7632 -3.5284 24 1 5.4439 4.5323 -2.8336 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7518 -1.7715 1.2055 29 1 1.6054 -0.2618 2.1369 30 1 3.8666 -2.4084 0.1953 31 1 6.3202 -2.2417 0.3048 32 1 3.5161 1.2041 2.4351 33 1 2.1110 -1.6561 -1.1949 34 1 4.2175 2.6631 -4.9635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:21 Heat of formation + Delta-G solvation = -121.614042 kcal Electronic energy + Delta-G solvation = -23325.140037 eV Core-core repulsion = 19537.666002 eV Total energy + Delta-G solvation = -3787.474035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.87927 -39.40757 -36.37448 -35.13374 -33.93950 -33.07774 -32.44889 -31.61334 -29.45172 -29.22692 -26.23209 -26.10442 -22.98630 -21.86349 -20.70170 -19.06133 -17.68277 -17.50148 -16.54968 -16.24128 -15.76319 -15.63653 -15.15473 -14.92833 -14.21799 -14.00868 -13.63218 -13.57116 -13.39490 -13.24852 -12.94967 -12.46256 -12.05109 -11.98415 -11.91633 -11.30427 -11.22116 -11.15018 -11.10653 -10.94589 -10.69849 -10.54863 -10.30668 -10.29450 -10.21403 -10.13178 -9.23789 -9.12341 -8.86367 -8.55123 -8.42588 -6.68791 -5.29490 0.98653 1.15014 1.53864 2.34663 3.07172 3.16716 3.26284 3.46112 4.08858 4.16380 4.57723 4.66340 4.69802 4.73448 5.09116 5.14362 5.20019 5.35322 5.48009 5.64844 5.76954 5.79873 5.84865 5.89691 5.95711 6.04269 6.11703 6.22542 6.42236 6.54975 6.63879 6.76527 6.87294 7.34572 7.88658 8.01018 8.92453 10.25345 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.005264 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.155475 B = 5318.036545 C = 6558.448093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.161 3.839 3 H 0.090 0.910 4 C -0.085 4.085 5 C -0.077 4.077 6 C -0.061 4.061 7 C -0.141 4.141 8 C 0.119 3.881 9 F -0.129 7.129 10 C -0.125 4.125 11 Br -0.041 7.041 12 C -0.061 4.061 13 N -1.131 6.131 14 S 2.713 3.287 15 O -1.009 7.009 16 O -1.006 7.006 17 C -1.014 5.014 18 H 0.102 0.898 19 C 0.138 3.862 20 N -0.846 5.846 21 Si 0.907 3.093 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.399 0.601 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -4.652 16.776 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.053 3.947 3 H 0.108 0.892 4 C -0.124 4.124 5 C -0.078 4.078 6 C -0.079 4.079 7 C -0.160 4.160 8 C 0.098 3.902 9 F -0.108 7.108 10 C -0.205 4.205 11 Br 0.045 6.955 12 C -0.080 4.080 13 N -0.885 5.885 14 S 2.812 3.188 15 O -1.000 7.000 16 O -0.996 6.996 17 C -1.147 5.147 18 H 0.120 0.880 19 C -0.080 4.080 20 N -0.476 5.476 21 Si 0.731 3.269 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.230 0.770 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.161 -3.886 16.103 16.606 hybrid contribution 1.494 0.181 0.265 1.528 sum 2.656 -3.705 16.368 16.991 Atomic orbital electron populations 1.22337 0.95549 1.02025 1.02987 1.20556 0.93584 0.96613 0.83955 0.89159 1.20999 0.90014 1.02384 0.98966 1.19866 0.96451 0.94307 0.97157 1.21040 0.92268 0.98751 0.95891 1.21122 0.96084 0.98062 1.00754 1.17359 0.77104 0.95862 0.99884 1.91528 1.28799 1.95946 1.94504 1.21811 0.95778 0.96245 1.06692 1.96698 1.81892 1.41275 1.75673 1.20871 0.91506 0.97771 0.97894 1.56114 1.83634 1.18281 1.30447 1.00477 0.75039 0.73001 0.70248 1.93371 1.83006 1.64853 1.58725 1.93360 1.56754 1.66009 1.83502 1.30528 1.36552 1.40488 1.07157 0.88017 1.24663 0.96339 0.94003 0.93009 1.69900 1.39241 1.35036 1.03423 0.86315 0.80806 0.79618 0.80203 1.18100 1.19629 1.19556 0.90628 0.92672 0.92254 0.90018 0.89648 0.84354 0.83873 0.84111 0.77042 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.52 37.16 0.35 -1.91 16 2 C 0.16 2.38 2.76 -67.93 -0.19 2.19 16 3 H 0.09 1.49 7.85 -51.93 -0.41 1.09 16 4 C -0.08 -0.92 4.95 -27.88 -0.14 -1.05 16 5 C -0.08 -0.98 4.95 -104.62 -0.52 -1.50 16 6 C -0.06 -0.78 9.29 -39.59 -0.37 -1.15 16 7 C -0.14 -1.93 10.03 -39.52 -0.40 -2.32 16 8 C 0.12 1.82 7.27 -39.39 -0.29 1.54 16 9 F -0.13 -2.04 16.73 2.25 0.04 -2.00 16 10 C -0.12 -1.87 6.23 -39.45 -0.25 -2.11 16 11 Br -0.04 -0.57 33.28 -68.01 -2.26 -2.83 16 12 C -0.06 -0.81 9.44 -39.57 -0.37 -1.19 16 13 N -1.13 -20.06 4.84 -4.89 -0.02 -20.08 16 14 S 2.71 68.85 4.93 -107.50 -0.53 68.32 16 15 O -1.01 -28.79 18.02 -57.17 -1.03 -29.82 16 16 O -1.01 -28.34 17.28 -57.17 -0.99 -29.32 16 17 C -1.01 -27.02 9.58 30.60 0.29 -26.73 16 18 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 19 C 0.14 3.82 5.46 -17.82 -0.10 3.72 16 20 N -0.85 -24.81 13.19 55.43 0.73 -24.08 16 21 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H 0.07 1.24 7.64 -51.93 -0.40 0.84 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.14 1.46 7.92 -52.49 -0.42 1.04 16 31 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.40 5.89 8.69 -34.47 -0.30 5.59 16 34 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -35.08 335.41 -9.59 -44.67 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.60 Total: 4.66 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -1.96 Total: -30.51 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.71 Total: -44.16 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -2.02 Total: -59.14 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 68.85 SS G_CDS: -0.53 Total: 68.32 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.26 Total: -2.83 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.08 -9.59 -44.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.940 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds