Wall clock time and date at job start Tue Mar 31 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47038 * 270.00126 * 3 2 1 5 5 H 1.48501 * 109.46845 * 29.99597 * 3 2 1 6 6 H 1.48492 * 109.47294 * 150.00058 * 3 2 1 7 7 C 1.37885 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99878 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99554 * 180.02562 * 7 2 1 10 10 O 1.42094 * 106.40360 * 66.45878 * 9 7 2 11 11 O 1.42101 * 106.40061 * 293.53367 * 9 7 2 12 12 N 1.65602 * 107.21409 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00281 * 90.00002 * 12 9 7 14 14 C 1.50706 * 109.47106 * 264.99512 * 13 12 9 15 15 C 1.33362 * 122.53341 * 90.02029 * 14 13 12 16 16 S 1.75880 * 109.61417 * 180.02562 * 15 14 13 17 17 C 1.75883 * 90.97765 * 0.02562 * 16 15 14 18 18 Br 1.89100 * 125.20948 * 180.02562 * 17 16 15 19 19 C 1.33483 * 109.58612 * 359.72926 * 17 16 15 20 20 C 1.46507 * 119.99575 * 269.99554 * 12 9 7 21 21 C 1.52998 * 117.49572 * 188.62486 * 20 12 9 22 22 C 1.52996 * 60.00126 * 252.51150 * 21 20 12 23 23 H 0.96994 * 120.00257 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47001 * 144.99803 * 13 12 9 25 25 H 1.09000 * 109.47574 * 25.00019 * 13 12 9 26 26 H 1.08001 * 125.19272 * 0.05018 * 15 14 13 27 27 H 1.07997 * 122.55396 * 180.24441 * 19 17 16 28 28 H 1.08992 * 115.55101 * 334.32995 * 20 12 9 29 29 H 1.09003 * 117.50193 * 359.97438 * 21 20 12 30 30 H 1.08997 * 117.49860 * 145.02502 * 21 20 12 31 31 H 1.09001 * 117.50030 * 252.51306 * 22 21 20 32 32 H 1.09000 * 117.51862 * 107.47891 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1673 -0.6505 1.2503 11 8 4.1682 -0.6490 -1.2491 12 7 4.2567 -2.7759 -0.0014 13 6 4.4739 -3.4742 -1.2708 14 6 3.2282 -4.2352 -1.6452 15 6 2.2549 -3.6994 -2.3829 16 16 0.9706 -4.8788 -2.6124 17 6 1.8531 -6.0691 -1.6648 18 35 1.2588 -7.8255 -1.2938 19 6 3.0095 -5.5449 -1.2529 20 6 4.4730 -3.4770 1.2667 21 6 5.1159 -4.8640 1.2063 22 6 3.6288 -4.7239 1.5376 23 1 -0.4850 0.8400 -0.0004 24 1 5.3065 -4.1698 -1.1649 25 1 4.7042 -2.7480 -2.0503 26 1 2.2556 -2.6947 -2.7792 27 1 3.7189 -6.0990 -0.6562 28 1 4.7220 -2.8431 2.1177 29 1 5.3775 -5.2552 0.2231 30 1 5.7881 -5.1429 2.0178 31 1 3.3227 -4.9105 2.5669 32 1 2.9121 -5.0224 0.7725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:20 Heat of formation + Delta-G solvation = -2.565385 kcal Electronic energy + Delta-G solvation = -21248.187505 eV Core-core repulsion = 17896.255888 eV Total energy + Delta-G solvation = -3351.931617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 364.954 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.11734 -36.79475 -35.72784 -34.51351 -33.18866 -33.00407 -31.53244 -28.50418 -26.63387 -26.36471 -22.72918 -22.01172 -21.12402 -19.18453 -18.42457 -17.83566 -17.18600 -16.76480 -16.09674 -15.23154 -14.98657 -14.35807 -13.94729 -13.56322 -13.50413 -13.11777 -12.99362 -12.85902 -12.68059 -12.16034 -11.73838 -11.47736 -11.43053 -11.21429 -10.95128 -10.87364 -10.76206 -10.67010 -10.61217 -10.51436 -10.24153 -10.07270 -9.84614 -9.23466 -9.12727 -8.47919 -8.28380 -8.12043 -6.81641 -5.34708 0.97505 1.21293 1.86969 1.89908 2.11580 2.73050 3.04294 3.13575 3.23497 3.91990 4.04543 4.15856 4.56439 5.06351 5.11557 5.19325 5.20243 5.25651 5.34910 5.45081 5.65403 5.76487 5.81878 5.96155 5.99008 6.07875 6.21668 6.36011 6.43069 6.55205 6.71189 7.27523 7.47035 8.24439 8.69207 10.30253 Molecular weight = 364.95amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.004360 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.527127 B = 6420.712686 C = 7302.334451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.155 3.845 3 Si 0.796 3.204 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.007 5.007 8 H 0.124 0.876 9 S 2.673 3.327 10 O -1.005 7.005 11 O -1.008 7.008 12 N -0.967 5.967 13 C 0.176 3.824 14 C -0.136 4.136 15 C -0.152 4.152 16 S 0.155 5.845 17 C -0.221 4.221 18 Br -0.005 7.005 19 C -0.072 4.072 20 C 0.096 3.904 21 C -0.192 4.192 22 C -0.205 4.205 23 H 0.280 0.720 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.180 0.820 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -15.184 -3.361 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.064 4.064 3 Si 0.616 3.384 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.142 5.142 8 H 0.142 0.858 9 S 2.777 3.223 10 O -0.995 6.995 11 O -0.998 6.998 12 N -0.798 5.798 13 C 0.048 3.952 14 C -0.150 4.150 15 C -0.290 4.290 16 S 0.419 5.581 17 C -0.417 4.417 18 Br 0.078 6.922 19 C -0.107 4.107 20 C -0.011 4.011 21 C -0.231 4.231 22 C -0.244 4.244 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.198 0.802 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.030 -14.987 -4.000 15.805 hybrid contribution 0.774 0.791 0.767 1.347 sum 3.803 -14.196 -3.233 15.048 Atomic orbital electron populations 1.69990 1.06467 1.28904 1.39518 1.24393 0.94711 0.98516 0.88794 0.87958 0.83678 0.84986 0.81806 1.17044 1.17876 1.14343 1.30447 1.15176 1.02154 1.66436 0.85790 1.01529 0.77558 0.69957 0.73252 1.93446 1.85450 1.75584 1.45066 1.93393 1.85487 1.75526 1.45435 1.57168 1.83380 1.30902 1.08318 1.19917 0.92791 0.96447 0.86068 1.19264 0.99974 0.94389 1.01406 1.25985 0.95926 1.03760 1.03354 1.84310 1.21841 1.02042 1.49952 1.25897 1.03298 0.97758 1.14766 1.96633 1.89119 1.11962 1.94460 1.20097 0.96176 0.94913 0.99483 1.21391 1.03400 0.88345 0.87999 1.23292 0.96487 1.00300 1.03023 1.23683 0.93765 1.03761 1.03181 0.90967 0.89558 0.87641 0.80230 0.83392 0.84308 0.88472 0.88359 0.88576 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.00 13.96 55.43 0.77 -22.22 16 2 C 0.16 4.33 5.47 -17.82 -0.10 4.23 16 3 Si 0.80 20.11 26.54 -169.99 -4.51 15.60 16 4 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.25 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.22 -5.74 5.61 56.52 0.32 -5.42 16 7 C -1.01 -26.97 10.29 30.60 0.31 -26.66 16 8 H 0.12 3.41 8.06 -52.49 -0.42 2.98 16 9 S 2.67 64.94 4.20 -107.50 -0.45 64.49 16 10 O -1.01 -26.50 14.81 -57.17 -0.85 -27.35 16 11 O -1.01 -25.49 15.38 -57.17 -0.88 -26.37 16 12 N -0.97 -18.22 3.12 -108.57 -0.34 -18.56 16 13 C 0.18 2.77 5.46 -5.19 -0.03 2.74 16 14 C -0.14 -2.12 4.95 -106.24 -0.53 -2.65 16 15 C -0.15 -2.51 10.97 29.03 0.32 -2.19 16 16 S 0.15 2.29 23.34 -107.50 -2.51 -0.21 16 17 C -0.22 -3.11 6.97 29.07 0.20 -2.91 16 18 Br -0.01 -0.06 34.07 -68.01 -2.32 -2.38 16 19 C -0.07 -1.00 6.83 -41.17 -0.28 -1.29 16 20 C 0.10 1.59 6.40 -67.93 -0.43 1.15 16 21 C -0.19 -2.36 9.29 -26.73 -0.25 -2.60 16 22 C -0.20 -2.96 9.53 -26.73 -0.25 -3.22 16 23 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.09 1.07 6.05 -51.93 -0.31 0.76 16 25 H 0.11 1.69 6.89 -51.93 -0.36 1.33 16 26 H 0.18 3.09 8.06 -52.49 -0.42 2.67 16 27 H 0.15 1.80 5.92 -52.49 -0.31 1.49 16 28 H 0.14 2.36 7.37 -51.93 -0.38 1.97 16 29 H 0.10 1.07 5.09 -51.93 -0.26 0.81 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.11 1.66 4.51 -51.93 -0.23 1.42 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -30.45 307.93 -10.25 -40.70 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.77 Total: 5.07 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: -1.03 Total: -33.39 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.43 Total: -40.78 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -1.73 Total: -53.72 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.51 Total: 15.60 kcal Atomic # 16 Polarization: 67.23 SS G_CDS: -2.96 Total: 64.27 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.32 Total: -2.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.45 -10.25 -40.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.130 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds