Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47038 * 270.00126 * 3 2 1 5 5 H 1.48501 * 109.46845 * 29.99597 * 3 2 1 6 6 H 1.48492 * 109.47294 * 150.00058 * 3 2 1 7 7 C 1.37885 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99878 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99554 * 180.02562 * 7 2 1 10 10 O 1.42094 * 106.40360 * 66.45878 * 9 7 2 11 11 O 1.42101 * 106.40061 * 293.53367 * 9 7 2 12 12 N 1.65602 * 107.21409 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00281 * 90.00002 * 12 9 7 14 14 C 1.50706 * 109.47106 * 264.99512 * 13 12 9 15 15 C 1.33362 * 122.53341 * 90.02029 * 14 13 12 16 16 S 1.75880 * 109.61417 * 180.02562 * 15 14 13 17 17 C 1.75883 * 90.97765 * 0.02562 * 16 15 14 18 18 Br 1.89100 * 125.20948 * 180.02562 * 17 16 15 19 19 C 1.33483 * 109.58612 * 359.72926 * 17 16 15 20 20 C 1.46507 * 119.99575 * 269.99554 * 12 9 7 21 21 C 1.52998 * 117.49572 * 188.62486 * 20 12 9 22 22 C 1.52996 * 60.00126 * 252.51150 * 21 20 12 23 23 H 0.96994 * 120.00257 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47001 * 144.99803 * 13 12 9 25 25 H 1.09000 * 109.47574 * 25.00019 * 13 12 9 26 26 H 1.08001 * 125.19272 * 0.05018 * 15 14 13 27 27 H 1.07997 * 122.55396 * 180.24441 * 19 17 16 28 28 H 1.08992 * 115.55101 * 334.32995 * 20 12 9 29 29 H 1.09003 * 117.50193 * 359.97438 * 21 20 12 30 30 H 1.08997 * 117.49860 * 145.02502 * 21 20 12 31 31 H 1.09001 * 117.50030 * 252.51306 * 22 21 20 32 32 H 1.09000 * 117.51862 * 107.47891 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1673 -0.6505 1.2503 11 8 4.1682 -0.6490 -1.2491 12 7 4.2567 -2.7759 -0.0014 13 6 4.4739 -3.4742 -1.2708 14 6 3.2282 -4.2352 -1.6452 15 6 2.2549 -3.6994 -2.3829 16 16 0.9706 -4.8788 -2.6124 17 6 1.8531 -6.0691 -1.6648 18 35 1.2588 -7.8255 -1.2938 19 6 3.0095 -5.5449 -1.2529 20 6 4.4730 -3.4770 1.2667 21 6 5.1159 -4.8640 1.2063 22 6 3.6288 -4.7239 1.5376 23 1 -0.4850 0.8400 -0.0004 24 1 5.3065 -4.1698 -1.1649 25 1 4.7042 -2.7480 -2.0503 26 1 2.2556 -2.6947 -2.7792 27 1 3.7189 -6.0990 -0.6562 28 1 4.7220 -2.8431 2.1177 29 1 5.3775 -5.2552 0.2231 30 1 5.7881 -5.1429 2.0178 31 1 3.3227 -4.9105 2.5669 32 1 2.9121 -5.0224 0.7725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = -22.751224 kcal Electronic energy + Delta-G solvation = -21249.062828 eV Core-core repulsion = 17896.255888 eV Total energy + Delta-G solvation = -3352.806940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 364.954 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33115 -38.08523 -37.59425 -36.51290 -35.16319 -34.39893 -32.68397 -29.68431 -28.50920 -27.86389 -23.87275 -23.15313 -22.42616 -20.77299 -19.96050 -19.42302 -18.87499 -18.23024 -17.51463 -17.10218 -16.36002 -15.72511 -15.61888 -15.38764 -14.98139 -14.70252 -14.33210 -14.25430 -13.98290 -13.60142 -13.41192 -13.13701 -12.91252 -12.79114 -12.65583 -12.52640 -12.38560 -12.03976 -11.85585 -11.78962 -11.74132 -11.32196 -11.27770 -11.22591 -11.10074 -9.63182 -9.61513 -9.38887 -8.93178 -7.46219 -0.22299 0.07372 0.09645 0.77506 0.90753 1.03124 1.11611 1.19180 1.50626 1.87974 2.44716 2.45228 2.99523 3.39160 3.81262 3.89975 3.97823 4.08859 4.17087 4.20437 4.35018 4.40530 4.63432 4.67577 4.74885 4.94369 5.12607 5.24074 5.28599 5.36963 5.40230 5.46447 5.86263 6.09894 6.57937 8.23824 Molecular weight = 364.95amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.004360 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.527127 B = 6420.712686 C = 7302.334451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.115 3.885 3 Si 0.815 3.185 4 H -0.238 1.238 5 H -0.223 1.223 6 H -0.233 1.233 7 C -1.019 5.019 8 H 0.106 0.894 9 S 2.690 3.310 10 O -1.029 7.029 11 O -1.024 7.024 12 N -0.961 5.961 13 C 0.167 3.833 14 C -0.133 4.133 15 C -0.183 4.183 16 S 0.152 5.848 17 C -0.223 4.223 18 Br 0.019 6.981 19 C -0.069 4.069 20 C 0.051 3.949 21 C -0.148 4.148 22 C -0.209 4.209 23 H 0.289 0.711 24 H 0.130 0.870 25 H 0.097 0.903 26 H 0.162 0.838 27 H 0.174 0.826 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 -17.185 -2.920 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.102 4.102 3 Si 0.633 3.367 4 H -0.162 1.162 5 H -0.146 1.146 6 H -0.156 1.156 7 C -1.152 5.152 8 H 0.124 0.876 9 S 2.792 3.208 10 O -1.020 7.020 11 O -1.014 7.014 12 N -0.795 5.795 13 C 0.040 3.960 14 C -0.147 4.147 15 C -0.321 4.321 16 S 0.416 5.584 17 C -0.419 4.419 18 Br 0.103 6.897 19 C -0.102 4.102 20 C -0.056 4.056 21 C -0.186 4.186 22 C -0.248 4.248 23 H 0.099 0.901 24 H 0.147 0.853 25 H 0.116 0.884 26 H 0.179 0.821 27 H 0.191 0.809 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.429 -16.974 -3.561 17.900 hybrid contribution 0.315 1.247 0.641 1.437 sum 4.744 -15.727 -2.921 16.685 Atomic orbital electron populations 1.70017 1.07257 1.30100 1.40674 1.25037 0.95428 1.00843 0.88861 0.87645 0.82898 0.83673 0.82531 1.16181 1.14576 1.15557 1.30880 1.17428 1.01325 1.65611 0.87559 1.00776 0.76121 0.71545 0.72316 1.93405 1.85204 1.77359 1.45999 1.93362 1.85115 1.77098 1.45803 1.56714 1.82775 1.29533 1.10480 1.20241 0.94304 0.96958 0.84462 1.19362 0.99488 0.95098 1.00787 1.25983 0.97437 1.03733 1.04947 1.84257 1.21635 1.02130 1.50380 1.26106 1.03114 0.98634 1.14070 1.96659 1.88978 1.09860 1.94250 1.20225 0.96561 0.94122 0.99327 1.21641 1.07446 0.89768 0.86698 1.23464 0.95106 0.95080 1.04993 1.23732 0.95338 1.02116 1.03658 0.90090 0.85260 0.88440 0.82068 0.80900 0.85552 0.86555 0.85403 0.87541 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.56 13.96 21.45 0.30 -48.26 16 2 C 0.12 6.51 5.47 84.66 0.46 6.98 16 3 Si 0.81 40.76 26.54 68.60 1.82 42.58 16 4 H -0.24 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.22 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.23 -12.08 5.61 99.48 0.56 -11.52 16 7 C -1.02 -55.98 10.29 67.74 0.70 -55.29 16 8 H 0.11 6.06 8.06 -2.91 -0.02 6.04 16 9 S 2.69 131.81 4.20 -56.49 -0.24 131.58 16 10 O -1.03 -54.79 14.81 -128.00 -1.90 -56.69 16 11 O -1.02 -52.28 15.38 -128.00 -1.97 -54.25 16 12 N -0.96 -35.31 3.12 -497.41 -1.55 -36.87 16 13 C 0.17 4.98 5.46 85.64 0.47 5.45 16 14 C -0.13 -3.99 4.95 -20.92 -0.10 -4.09 16 15 C -0.18 -6.14 10.97 66.72 0.73 -5.41 16 16 S 0.15 4.50 23.34 -56.49 -1.32 3.18 16 17 C -0.22 -5.88 6.97 66.74 0.47 -5.41 16 18 Br 0.02 0.41 34.07 -20.37 -0.69 -0.28 16 19 C -0.07 -1.74 6.83 21.24 0.15 -1.60 16 20 C 0.05 1.59 6.40 44.99 0.29 1.87 16 21 C -0.15 -2.96 9.29 30.59 0.28 -2.67 16 22 C -0.21 -5.49 9.53 30.59 0.29 -5.19 16 23 H 0.29 14.97 8.31 -92.71 -0.77 14.20 16 24 H 0.13 2.71 6.05 -2.39 -0.01 2.69 16 25 H 0.10 3.07 6.89 -2.39 -0.02 3.05 16 26 H 0.16 5.92 8.06 -2.91 -0.02 5.90 16 27 H 0.17 3.46 5.92 -2.91 -0.02 3.44 16 28 H 0.13 4.20 7.37 -2.39 -0.02 4.19 16 29 H 0.12 1.90 5.09 -2.39 -0.01 1.88 16 30 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.10 2.79 4.51 -2.39 -0.01 2.78 16 Total: -1.00 -66.60 307.93 -0.79 -67.39 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.03 Total: 16.98 kcal Atomic # 6 Polarization: -69.09 SS G_CDS: 3.73 Total: -65.36 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.25 Total: -85.13 kcal Atomic # 8 Polarization: -107.07 SS G_CDS: -3.86 Total: -110.94 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.82 Total: 42.58 kcal Atomic # 16 Polarization: 136.31 SS G_CDS: -1.56 Total: 134.75 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -0.69 Total: -0.28 kcal Total: -66.60 -0.79 -67.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.635 kcal (2) G-P(sol) polarization free energy of solvation -66.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds