Wall clock time and date at job start Tue Mar 31 2020 07:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48502 * 109.46685 * 239.99993 * 3 2 1 5 5 H 1.48502 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46968 * 120.00138 * 3 2 1 7 7 C 1.39870 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99738 * 195.22173 * 7 2 1 9 9 C 1.41133 * 119.99924 * 15.22147 * 7 2 1 10 10 C 1.40890 * 120.15477 * 205.12356 * 9 7 2 11 11 C 1.36340 * 119.83541 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.16185 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84246 * 179.97438 * 12 11 10 14 14 S 1.65601 * 120.00228 * 74.06279 * 13 12 11 15 15 O 1.42104 * 106.40210 * 309.32220 * 14 13 12 16 16 O 1.42102 * 106.40512 * 176.40336 * 14 13 12 17 17 C 1.76199 * 107.21814 * 62.86183 * 14 13 12 18 18 C 1.38265 * 119.98477 * 84.47743 * 17 14 13 19 19 C 1.38230 * 120.04932 * 180.02562 * 18 17 14 20 20 C 1.38217 * 120.02391 * 0.02562 * 19 18 17 21 21 N 1.48005 * 120.01009 * 179.97438 * 20 19 18 22 22 O 1.21799 * 120.00121 * 0.02562 * 21 20 19 23 23 O 1.21804 * 120.00137 * 180.02562 * 21 20 19 24 24 C 1.38434 * 119.97550 * 359.97438 * 20 19 18 25 25 F 1.35105 * 120.02136 * 180.02562 * 24 20 19 26 26 C 1.38173 * 119.98932 * 264.77775 * 17 14 13 27 27 C 1.39565 * 120.31698 * 0.24344 * 12 11 10 28 28 C 1.36343 * 120.15586 * 359.49495 * 27 12 11 29 29 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.07904 * 0.02562 * 10 9 7 31 31 H 1.08005 * 119.91678 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00091 * 254.06644 * 13 12 11 33 33 H 1.07994 * 119.97705 * 0.04576 * 18 17 14 34 34 H 1.08002 * 119.98358 * 180.02562 * 19 18 17 35 35 H 1.08007 * 120.01387 * 0.02562 * 26 17 14 36 36 H 1.08003 * 119.91964 * 179.72405 * 27 12 11 37 37 H 1.08007 * 120.07675 * 180.23283 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0083 -1.2113 -0.0005 8 1 3.0598 -1.2278 0.2450 9 6 1.3397 -2.4120 -0.3220 10 6 1.8252 -3.6434 0.1604 11 6 1.1745 -4.7994 -0.1546 12 6 0.0305 -4.7649 -0.9532 13 7 -0.6267 -5.9463 -1.2703 14 16 -1.5363 -6.7213 -0.1239 15 8 -0.7112 -6.8456 1.0264 16 8 -2.1375 -7.8333 -0.7729 17 6 -2.8503 -5.6350 0.3214 18 6 -4.0061 -5.6015 -0.4367 19 6 -5.0375 -4.7494 -0.0889 20 6 -4.9141 -3.9295 1.0169 21 7 -6.0184 -3.0169 1.3887 22 8 -7.0363 -2.9886 0.7204 23 8 -5.9093 -2.2940 2.3630 24 6 -3.7573 -3.9622 1.7766 25 9 -3.6359 -3.1615 2.8580 26 6 -2.7227 -4.8125 1.4243 27 6 -0.4530 -3.5492 -1.4392 28 6 0.1845 -2.3849 -1.1279 29 1 -0.4850 0.8400 0.0004 30 1 2.7107 -3.6716 0.7782 31 1 1.5459 -5.7442 0.2142 32 1 -0.5530 -6.3176 -2.1634 33 1 -4.1033 -6.2417 -1.3009 34 1 -5.9401 -4.7244 -0.6815 35 1 -1.8176 -4.8350 2.0132 36 1 -1.3363 -3.5304 -2.0603 37 1 -0.1930 -1.4445 -1.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095448592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:37 Heat of formation + Delta-G solvation = -66.809748 kcal Electronic energy + Delta-G solvation = -30512.950575 eV Core-core repulsion = 25879.287657 eV Total energy + Delta-G solvation = -4633.662918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.056 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.41561 -42.31491 -39.50579 -38.23619 -37.15127 -36.71677 -35.83098 -35.03750 -33.06879 -32.61252 -31.35991 -29.81751 -28.96922 -27.05625 -24.98899 -23.73452 -23.15499 -21.38617 -21.04118 -19.77946 -19.67965 -18.92195 -18.31615 -17.82392 -17.62701 -17.51576 -16.98991 -16.70361 -16.39373 -15.98127 -15.54652 -14.96444 -14.76508 -14.40134 -14.19838 -13.86196 -13.50306 -13.21266 -13.01891 -12.64410 -12.47707 -12.33803 -12.05208 -11.93407 -11.86389 -11.75429 -11.56249 -11.54855 -11.35396 -11.27718 -11.14546 -11.06311 -10.93046 -10.39234 -10.14573 -10.02048 -9.49138 -9.45136 -9.19910 -7.87971 -7.58953 -7.07986 -4.67259 -0.74269 0.32547 0.44838 0.88230 1.05298 2.39437 2.54795 2.84383 2.91531 2.92697 2.97194 3.10272 3.32049 3.69489 3.69939 3.79998 4.09296 4.28645 4.52155 4.57918 4.78346 4.90821 5.11698 5.27411 5.33647 5.41480 5.83917 5.96420 6.03361 6.14303 6.16896 6.69487 6.75310 6.85366 7.00930 7.11326 7.30240 7.42453 7.70783 7.73681 7.79302 7.96165 8.30033 8.54652 8.63784 9.83441 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.004361 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.517631 B = 6418.294467 C = 9027.192448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.438 4.438 8 H 0.084 0.916 9 C 0.120 3.880 10 C -0.223 4.223 11 C -0.058 4.058 12 C -0.052 4.052 13 N -1.017 6.017 14 S 2.666 3.334 15 O -0.940 6.940 16 O -0.967 6.967 17 C -0.594 4.594 18 C -0.035 4.035 19 C -0.053 4.053 20 C -0.042 4.042 21 N 0.026 4.974 22 O -0.151 6.151 23 O -0.137 6.137 24 C 0.159 3.841 25 F -0.095 7.095 26 C -0.042 4.042 27 C -0.085 4.085 28 C -0.166 4.166 29 H 0.287 0.713 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.412 0.588 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.090 0.910 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 -7.022 -2.186 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.116 3.884 10 C -0.244 4.244 11 C -0.080 4.080 12 C -0.149 4.149 13 N -0.773 5.773 14 S 2.755 3.245 15 O -0.930 6.930 16 O -0.957 6.957 17 C -0.676 4.676 18 C -0.055 4.055 19 C -0.072 4.072 20 C -0.126 4.126 21 N 0.548 4.452 22 O -0.367 6.367 23 O -0.356 6.356 24 C 0.138 3.862 25 F -0.073 7.073 26 C -0.062 4.062 27 C -0.106 4.106 28 C -0.186 4.186 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.250 0.750 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.196 0.804 36 H 0.108 0.892 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.925 -8.105 -1.777 10.196 hybrid contribution -0.454 1.808 -0.060 1.865 sum -6.379 -6.296 -1.837 9.150 Atomic orbital electron populations 1.69802 1.07744 1.30143 1.32469 1.26050 0.94881 1.01909 0.92010 0.86229 0.80122 0.79464 0.80302 1.18532 1.20052 1.18633 1.19745 0.97563 0.90931 1.38458 0.89746 1.17779 0.90912 0.92242 0.87462 1.20695 1.03791 0.92517 1.07394 1.20607 0.93207 0.97634 0.96512 1.16588 0.99930 0.83353 1.15042 1.52068 1.61214 1.37112 1.26890 1.03810 0.73137 0.73114 0.74458 1.93603 1.64743 1.84675 1.49974 1.93564 1.77941 1.48750 1.75397 1.31814 1.17464 1.15596 1.02710 1.20968 0.90139 0.95893 0.98503 1.21077 1.01093 0.91994 0.93081 1.21524 0.89227 1.00079 1.01815 1.43362 1.01399 1.00269 1.00180 1.94530 1.17811 1.72985 1.51377 1.94643 1.86803 1.37276 1.16911 1.17384 0.92520 0.91236 0.85109 1.91711 1.95727 1.69840 1.49987 1.21138 0.98263 0.91120 0.95664 1.20609 0.98410 0.92384 0.99205 1.21035 0.99177 0.96740 1.01677 0.90191 0.88161 0.87979 0.75029 0.81580 0.81316 0.80358 0.89158 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.14 10.84 55.54 0.60 -17.53 16 2 C 0.07 1.62 5.19 -17.34 -0.09 1.53 16 3 Si 0.92 16.90 29.59 -169.99 -5.03 11.87 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.44 -10.29 9.04 -37.87 -0.34 -10.64 16 8 H 0.08 1.89 7.89 -52.49 -0.41 1.47 16 9 C 0.12 2.80 5.58 -106.80 -0.60 2.20 16 10 C -0.22 -4.82 9.74 -39.26 -0.38 -5.20 16 11 C -0.06 -1.15 9.18 -39.77 -0.37 -1.52 16 12 C -0.05 -0.94 5.80 -83.69 -0.49 -1.43 16 13 N -1.02 -14.58 5.65 32.51 0.18 -14.40 16 14 S 2.67 37.99 5.70 -107.50 -0.61 37.38 16 15 O -0.94 -16.04 16.09 -57.17 -0.92 -16.96 16 16 O -0.97 -14.31 17.43 -57.17 -1.00 -15.30 16 17 C -0.59 -7.93 5.85 -39.60 -0.23 -8.16 16 18 C -0.04 -0.39 9.52 -39.57 -0.38 -0.76 16 19 C -0.05 -0.59 9.55 -39.59 -0.38 -0.97 16 20 C -0.04 -0.60 6.86 -79.89 -0.55 -1.15 16 21 N 0.03 0.40 4.45 33.99 0.15 0.56 16 22 O -0.15 -2.25 18.45 -29.46 -0.54 -2.79 16 23 O -0.14 -2.34 17.42 -29.46 -0.51 -2.85 16 24 C 0.16 2.42 7.25 -39.42 -0.29 2.14 16 25 F -0.09 -1.56 15.48 2.25 0.03 -1.53 16 26 C -0.04 -0.61 9.51 -39.52 -0.38 -0.99 16 27 C -0.08 -1.65 9.90 -39.77 -0.39 -2.04 16 28 C -0.17 -3.73 8.63 -39.27 -0.34 -4.07 16 29 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 30 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 31 H 0.10 1.88 7.84 -52.48 -0.41 1.47 16 32 H 0.41 4.76 8.95 -34.47 -0.31 4.45 16 33 H 0.17 1.32 7.75 -52.49 -0.41 0.91 16 34 H 0.17 1.39 7.61 -52.49 -0.40 0.99 16 35 H 0.18 2.58 7.51 -52.48 -0.39 2.18 16 36 H 0.09 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.12 2.90 6.10 -52.48 -0.32 2.58 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -27.92 352.08 -10.16 -38.08 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -2.63 Total: 9.24 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -5.19 Total: -31.05 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.94 Total: -31.38 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -2.97 Total: -37.90 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: 37.99 SS G_CDS: -0.61 Total: 37.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.92 -10.16 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095448592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.729 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds