Wall clock time and date at job start Tue Mar 31 2020 07:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86802 * 120.00167 * 2 1 4 4 H 1.48502 * 109.46685 * 239.99993 * 3 2 1 5 5 H 1.48502 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46968 * 120.00138 * 3 2 1 7 7 C 1.39870 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99738 * 195.22173 * 7 2 1 9 9 C 1.41133 * 119.99924 * 15.22147 * 7 2 1 10 10 C 1.40890 * 120.15477 * 205.12356 * 9 7 2 11 11 C 1.36340 * 119.83541 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.16185 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84246 * 179.97438 * 12 11 10 14 14 S 1.65601 * 120.00228 * 74.06279 * 13 12 11 15 15 O 1.42104 * 106.40210 * 309.32220 * 14 13 12 16 16 O 1.42102 * 106.40512 * 176.40336 * 14 13 12 17 17 C 1.76199 * 107.21814 * 62.86183 * 14 13 12 18 18 C 1.38265 * 119.98477 * 84.47743 * 17 14 13 19 19 C 1.38230 * 120.04932 * 180.02562 * 18 17 14 20 20 C 1.38217 * 120.02391 * 0.02562 * 19 18 17 21 21 N 1.48005 * 120.01009 * 179.97438 * 20 19 18 22 22 O 1.21799 * 120.00121 * 0.02562 * 21 20 19 23 23 O 1.21804 * 120.00137 * 180.02562 * 21 20 19 24 24 C 1.38434 * 119.97550 * 359.97438 * 20 19 18 25 25 F 1.35105 * 120.02136 * 180.02562 * 24 20 19 26 26 C 1.38173 * 119.98932 * 264.77775 * 17 14 13 27 27 C 1.39565 * 120.31698 * 0.24344 * 12 11 10 28 28 C 1.36343 * 120.15586 * 359.49495 * 27 12 11 29 29 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.07904 * 0.02562 * 10 9 7 31 31 H 1.08005 * 119.91678 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00091 * 254.06644 * 13 12 11 33 33 H 1.07994 * 119.97705 * 0.04576 * 18 17 14 34 34 H 1.08002 * 119.98358 * 180.02562 * 19 18 17 35 35 H 1.08007 * 120.01387 * 0.02562 * 26 17 14 36 36 H 1.08003 * 119.91964 * 179.72405 * 27 12 11 37 37 H 1.08007 * 120.07675 * 180.23283 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0083 -1.2113 -0.0005 8 1 3.0598 -1.2278 0.2450 9 6 1.3397 -2.4120 -0.3220 10 6 1.8252 -3.6434 0.1604 11 6 1.1745 -4.7994 -0.1546 12 6 0.0305 -4.7649 -0.9532 13 7 -0.6267 -5.9463 -1.2703 14 16 -1.5363 -6.7213 -0.1239 15 8 -0.7112 -6.8456 1.0264 16 8 -2.1375 -7.8333 -0.7729 17 6 -2.8503 -5.6350 0.3214 18 6 -4.0061 -5.6015 -0.4367 19 6 -5.0375 -4.7494 -0.0889 20 6 -4.9141 -3.9295 1.0169 21 7 -6.0184 -3.0169 1.3887 22 8 -7.0363 -2.9886 0.7204 23 8 -5.9093 -2.2940 2.3630 24 6 -3.7573 -3.9622 1.7766 25 9 -3.6359 -3.1615 2.8580 26 6 -2.7227 -4.8125 1.4243 27 6 -0.4530 -3.5492 -1.4392 28 6 0.1845 -2.3849 -1.1279 29 1 -0.4850 0.8400 0.0004 30 1 2.7107 -3.6716 0.7782 31 1 1.5459 -5.7442 0.2142 32 1 -0.5530 -6.3176 -2.1634 33 1 -4.1033 -6.2417 -1.3009 34 1 -5.9401 -4.7244 -0.6815 35 1 -1.8176 -4.8350 2.0132 36 1 -1.3363 -3.5304 -2.0603 37 1 -0.1930 -1.4445 -1.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095448592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:35 Heat of formation + Delta-G solvation = -82.673896 kcal Electronic energy + Delta-G solvation = -30513.638496 eV Core-core repulsion = 25879.287657 eV Total energy + Delta-G solvation = -4634.350839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.056 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -50.60946 -43.50434 -40.56480 -39.81638 -38.42668 -37.92209 -37.10305 -36.56044 -34.62425 -33.71035 -32.39192 -31.45449 -30.57948 -28.21883 -26.61991 -24.80287 -24.26692 -23.01622 -22.63047 -20.95446 -20.83906 -20.10549 -19.55789 -19.26842 -19.01421 -18.78090 -18.17208 -18.04081 -17.49757 -17.19731 -17.14408 -16.19516 -15.90711 -15.76526 -15.54245 -15.25691 -14.67234 -14.56974 -14.28963 -14.09567 -13.90187 -13.53960 -13.39318 -13.33116 -13.22536 -13.16000 -12.98167 -12.89360 -12.74319 -12.60019 -12.50817 -12.44662 -12.28726 -11.72897 -11.61635 -11.46688 -11.08544 -10.66992 -10.52715 -9.51978 -9.24007 -8.72013 -6.40938 -1.86957 -0.88556 -0.57607 -0.28215 -0.07957 0.80869 1.15912 1.38448 1.46936 1.48769 1.50959 1.89786 2.16728 2.24220 2.51994 2.64243 2.75705 3.08673 3.42717 3.51791 3.65282 3.82187 3.82840 4.13693 4.30556 4.41533 4.42151 4.50973 4.62058 4.76523 5.04430 5.05079 5.09768 5.25625 5.35149 5.63447 5.77771 6.03862 6.08789 6.20094 6.23858 6.35785 6.62621 6.85917 6.96939 8.21376 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.004361 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.517631 B = 6418.294467 C = 9027.192448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.481 4.481 8 H 0.081 0.919 9 C 0.091 3.909 10 C -0.237 4.237 11 C -0.068 4.068 12 C -0.023 4.023 13 N -1.014 6.014 14 S 2.700 3.300 15 O -0.968 6.968 16 O -0.959 6.959 17 C -0.601 4.601 18 C -0.017 4.017 19 C -0.034 4.034 20 C -0.050 4.050 21 N 0.024 4.976 22 O -0.109 6.109 23 O -0.200 6.200 24 C 0.134 3.866 25 F -0.113 7.113 26 C -0.055 4.055 27 C -0.081 4.081 28 C -0.188 4.188 29 H 0.289 0.711 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.429 0.571 33 H 0.211 0.789 34 H 0.210 0.790 35 H 0.170 0.830 36 H 0.119 0.881 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 -9.159 -4.460 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.510 4.510 8 H 0.099 0.901 9 C 0.088 3.912 10 C -0.257 4.257 11 C -0.089 4.089 12 C -0.119 4.119 13 N -0.772 5.772 14 S 2.789 3.211 15 O -0.958 6.958 16 O -0.949 6.949 17 C -0.684 4.684 18 C -0.036 4.036 19 C -0.053 4.053 20 C -0.134 4.134 21 N 0.545 4.455 22 O -0.338 6.338 23 O -0.403 6.403 24 C 0.112 3.888 25 F -0.091 7.091 26 C -0.075 4.075 27 C -0.102 4.102 28 C -0.208 4.208 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.270 0.730 33 H 0.227 0.773 34 H 0.226 0.774 35 H 0.187 0.813 36 H 0.137 0.863 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.529 -10.187 -3.957 13.271 hybrid contribution -0.159 2.076 0.483 2.137 sum -7.688 -8.112 -3.473 11.703 Atomic orbital electron populations 1.69859 1.08909 1.30822 1.34354 1.26749 0.95485 1.04550 0.91182 0.85265 0.78808 0.75633 0.80225 1.18106 1.19549 1.18470 1.19928 0.97772 0.92121 1.41189 0.90071 1.18069 0.91822 0.92952 0.88316 1.20838 1.04279 0.92858 1.07771 1.20839 0.93657 0.97577 0.96806 1.16486 0.98790 0.84256 1.12391 1.51959 1.61452 1.35635 1.28165 1.02356 0.72793 0.72562 0.73400 1.93586 1.66028 1.85141 1.51069 1.93586 1.77789 1.48137 1.75354 1.31678 1.18360 1.15377 1.02991 1.21544 0.88420 0.95148 0.98534 1.21618 1.02324 0.89895 0.91459 1.21776 0.88426 1.00463 1.02777 1.43555 1.01720 1.00305 0.99959 1.94479 1.17705 1.71529 1.50118 1.94676 1.87604 1.39526 1.18519 1.17587 0.93610 0.92039 0.85536 1.91658 1.95922 1.70547 1.51018 1.21087 0.98046 0.91859 0.96501 1.20834 0.98776 0.91711 0.98899 1.21007 0.99805 0.97326 1.02665 0.90003 0.88040 0.86527 0.72992 0.77258 0.77359 0.81293 0.86311 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.76 10.84 21.82 0.24 -39.53 16 2 C 0.04 1.72 5.19 85.23 0.44 2.16 16 3 Si 0.98 35.82 29.59 68.60 2.03 37.85 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.48 -23.82 9.04 23.38 0.21 -23.60 16 8 H 0.08 3.86 7.89 -2.91 -0.02 3.84 16 9 C 0.09 4.45 5.58 -21.27 -0.12 4.33 16 10 C -0.24 -10.50 9.74 22.48 0.22 -10.28 16 11 C -0.07 -2.63 9.18 22.15 0.20 -2.42 16 12 C -0.02 -0.78 5.80 38.67 0.22 -0.56 16 13 N -1.01 -25.49 5.65 -51.07 -0.29 -25.78 16 14 S 2.70 67.70 5.70 -56.49 -0.32 67.38 16 15 O -0.97 -31.12 16.09 -128.00 -2.06 -33.18 16 16 O -0.96 -23.74 17.43 -128.00 -2.23 -25.97 16 17 C -0.60 -14.13 5.85 22.26 0.13 -14.00 16 18 C -0.02 -0.29 9.52 22.27 0.21 -0.07 16 19 C -0.03 -0.60 9.55 22.26 0.21 -0.38 16 20 C -0.05 -1.33 6.86 36.42 0.25 -1.08 16 21 N 0.02 0.73 4.45 -46.37 -0.21 0.53 16 22 O -0.11 -2.93 18.45 18.89 0.35 -2.58 16 23 O -0.20 -7.02 17.42 18.88 0.33 -6.69 16 24 C 0.13 4.08 7.25 22.37 0.16 4.24 16 25 F -0.11 -3.97 15.48 44.97 0.70 -3.28 16 26 C -0.05 -1.56 9.51 22.31 0.21 -1.35 16 27 C -0.08 -3.05 9.90 22.15 0.22 -2.83 16 28 C -0.19 -8.64 8.63 22.47 0.19 -8.44 16 29 H 0.29 12.99 8.30 -92.71 -0.77 12.23 16 30 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.12 4.15 7.84 -2.91 -0.02 4.13 16 32 H 0.43 8.01 8.95 -96.75 -0.87 7.15 16 33 H 0.21 1.75 7.75 -2.91 -0.02 1.72 16 34 H 0.21 2.06 7.61 -2.91 -0.02 2.03 16 35 H 0.17 5.03 7.51 -2.91 -0.02 5.00 16 36 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 37 H 0.11 5.23 6.10 -2.91 -0.02 5.21 16 Total: -1.00 -63.71 352.08 1.61 -62.09 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.31 Total: 23.45 kcal Atomic # 6 Polarization: -57.07 SS G_CDS: 2.77 Total: -54.29 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.26 Total: -64.77 kcal Atomic # 8 Polarization: -64.81 SS G_CDS: -3.61 Total: -68.42 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.70 Total: -3.28 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 67.70 SS G_CDS: -0.32 Total: 67.38 kcal Total: -63.71 1.61 -62.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095448592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.582 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds