Wall clock time and date at job start Tue Mar 31 2020 07:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 C 1.53003 * 109.47447 * 119.99669 * 2 1 3 5 5 H 1.09006 * 109.48715 * 59.95591 * 4 2 1 6 6 C 1.53054 * 109.48534 * 299.89652 * 4 2 1 7 7 N 1.46962 * 109.36176 * 181.63044 * 6 4 2 8 8 C 1.46894 * 111.00035 * 183.18493 * 7 6 4 9 9 C 1.53002 * 109.47291 * 76.69989 * 8 7 6 10 10 F 1.39907 * 109.46653 * 54.04878 * 9 8 7 11 11 F 1.39900 * 109.47353 * 174.04485 * 9 8 7 12 12 F 1.39899 * 109.47126 * 294.04808 * 9 8 7 13 13 C 1.46958 * 110.88067 * 59.31909 * 7 6 4 14 14 C 1.53051 * 109.36364 * 300.67643 * 13 7 6 15 15 N 1.46948 * 109.49173 * 180.02562 * 4 2 1 16 16 C 1.46908 * 111.00123 * 303.15314 * 15 4 2 17 17 C 1.50691 * 109.47155 * 169.99983 * 16 15 4 18 18 O 1.21285 * 120.00522 * 359.72977 * 17 16 15 19 19 N 1.34782 * 119.99803 * 180.02562 * 17 16 15 20 20 C 1.46493 * 119.99898 * 0.02562 * 19 17 16 21 21 C 1.46499 * 119.99901 * 180.02562 * 19 17 16 22 22 C 1.50692 * 109.47281 * 89.99694 * 21 19 17 23 23 H 1.07998 * 120.00418 * 0.02562 * 22 21 19 24 24 C 1.37881 * 120.00071 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99800 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00200 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47183 * 60.00313 * 26 24 22 28 28 H 1.48499 * 109.47387 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47026 * 300.00554 * 26 24 22 30 30 H 1.08998 * 109.47199 * 300.00245 * 1 2 3 31 31 H 1.08999 * 109.47023 * 60.00472 * 1 2 3 32 32 H 1.09004 * 109.46561 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47199 * 239.99755 * 2 1 3 34 34 H 1.09003 * 109.47223 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46808 * 299.99660 * 3 2 1 36 36 H 1.08998 * 109.47305 * 59.99819 * 3 2 1 37 37 H 1.09002 * 109.48954 * 301.59220 * 6 4 2 38 38 H 1.08994 * 109.49393 * 61.66360 * 6 4 2 39 39 H 1.09001 * 109.47697 * 196.70352 * 8 7 6 40 40 H 1.09005 * 109.47341 * 316.70199 * 8 7 6 41 41 H 1.08997 * 109.49177 * 60.64562 * 13 7 6 42 42 H 1.09002 * 109.48765 * 180.71873 * 13 7 6 43 43 H 1.09002 * 109.49229 * 298.43894 * 14 13 7 44 44 H 1.08998 * 109.49114 * 178.37314 * 14 13 7 45 45 H 1.08997 * 109.46550 * 50.00036 * 16 15 4 46 46 H 1.08999 * 109.47026 * 290.00314 * 16 15 4 47 47 H 1.09005 * 109.46935 * 90.00338 * 20 19 17 48 48 H 1.09000 * 109.47087 * 209.99583 * 20 19 17 49 49 H 1.08997 * 109.47570 * 330.00050 * 20 19 17 50 50 H 1.09003 * 109.47307 * 210.00199 * 21 19 17 51 51 H 1.09006 * 109.47300 * 329.99730 * 21 19 17 52 52 H 0.97005 * 119.99546 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6763 -1.7487 1.2500 6 6 1.5322 0.0016 2.4992 7 7 2.0557 -0.6701 3.6969 8 6 1.5290 -0.0507 4.9203 9 6 0.0847 -0.5049 5.1409 10 9 0.0295 -1.9028 5.1349 11 9 -0.3719 -0.0255 6.3734 12 9 -0.7240 -0.0017 4.1163 13 6 3.5252 -0.6702 3.6973 14 6 4.0330 -1.3930 2.4475 15 7 3.5096 -0.7209 1.2500 16 6 4.0368 -1.3400 0.0265 17 6 5.5230 -1.1049 -0.0552 18 8 6.0868 -0.4786 0.8171 19 7 6.2248 -1.5855 -1.1007 20 6 5.5427 -2.3359 -2.1579 21 6 7.6698 -1.3574 -1.1799 22 6 8.3950 -2.4881 -0.4970 23 1 7.8356 -3.2962 -0.0492 24 6 9.7728 -2.4917 -0.4448 25 7 10.4540 -1.5080 -0.9906 26 14 10.6718 -3.8938 0.4010 27 1 10.3350 -5.1745 -0.2708 28 1 12.1365 -3.6625 0.3209 29 1 10.2586 -3.9586 1.8259 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.8734 1.0368 2.4845 38 1 0.4427 -0.0223 2.5157 39 1 2.1388 -0.3524 5.7719 40 1 1.5573 1.0343 4.8195 41 1 3.8890 0.3573 3.6962 42 1 3.8886 -1.1841 4.5873 43 1 3.6918 -2.4282 2.4621 44 1 5.1226 -1.3692 2.4309 45 1 3.5506 -0.8977 -0.8430 46 1 3.8390 -2.4117 0.0474 47 1 5.2074 -1.6475 -2.9337 48 1 6.2309 -3.0625 -2.5897 49 1 4.6822 -2.8561 -1.7370 50 1 7.9734 -1.3100 -2.2257 51 1 7.9168 -0.4171 -0.6869 52 1 11.4234 -1.5104 -0.9536 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095468496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:00 Heat of formation + Delta-G solvation = -189.004600 kcal Electronic energy + Delta-G solvation = -35747.361424 eV Core-core repulsion = 30752.468379 eV Total energy + Delta-G solvation = -4994.893045 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.203 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -51.04210 -48.61305 -48.47730 -41.37283 -40.04371 -37.34731 -36.59234 -35.46254 -34.70735 -31.80156 -30.58217 -30.07672 -28.37426 -27.95928 -27.18180 -25.77467 -25.23479 -24.16841 -23.43062 -21.82090 -20.16105 -19.74699 -19.47183 -19.41191 -18.67612 -18.46310 -17.92408 -17.29485 -16.89326 -16.67741 -16.45411 -16.14784 -15.93181 -15.52250 -15.43675 -15.38578 -15.05158 -14.97631 -14.92486 -14.75590 -14.70408 -14.65335 -14.36622 -14.07946 -13.94460 -13.65353 -13.61274 -13.42855 -13.30544 -13.12625 -13.05861 -12.85538 -12.76392 -12.70135 -12.53103 -12.47178 -12.24075 -12.14588 -11.93009 -11.74206 -11.67395 -11.49165 -11.11464 -10.63564 -10.44752 -9.63640 -9.36615 -9.22420 -8.21312 -6.36368 1.36693 1.40552 1.47944 1.73976 1.90273 2.24061 2.41119 2.46157 2.88161 2.96871 3.07953 3.09429 3.44916 3.65278 3.73793 3.89992 3.98276 4.06954 4.21268 4.22549 4.27290 4.28345 4.30180 4.43051 4.44675 4.49034 4.56977 4.65419 4.73225 4.82577 4.83524 4.89480 4.95756 4.97821 5.01640 5.04749 5.11234 5.18394 5.25012 5.29526 5.47220 5.55221 5.57715 5.62642 5.72780 5.85906 5.99282 6.07912 6.17226 6.71824 6.84983 7.30185 7.56661 8.85265 Molecular weight = 365.20amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.002518 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.149419 B =11117.532350 C =12498.163882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.137 4.137 4 C 0.096 3.904 5 H 0.049 0.951 6 C 0.047 3.953 7 N -0.542 5.542 8 C 0.010 3.990 9 C 0.460 3.540 10 F -0.184 7.184 11 F -0.186 7.186 12 F -0.187 7.187 13 C 0.074 3.926 14 C 0.056 3.944 15 N -0.525 5.525 16 C 0.050 3.950 17 C 0.498 3.502 18 O -0.575 6.575 19 N -0.614 5.614 20 C 0.079 3.921 21 C 0.262 3.738 22 C -0.541 4.541 23 H 0.052 0.948 24 C 0.008 3.992 25 N -0.929 5.929 26 Si 0.966 3.034 27 H -0.261 1.261 28 H -0.279 1.279 29 H -0.277 1.277 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.126 0.874 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.021 0.979 51 H -0.003 1.003 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.738 1.962 6.555 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.195 4.195 4 C -0.012 4.012 5 H 0.067 0.933 6 C -0.081 4.081 7 N -0.267 5.267 8 C -0.120 4.120 9 C 0.405 3.595 10 F -0.165 7.165 11 F -0.167 7.167 12 F -0.169 7.169 13 C -0.054 4.054 14 C -0.072 4.072 15 N -0.250 5.250 16 C -0.081 4.081 17 C 0.286 3.714 18 O -0.455 6.455 19 N -0.347 5.347 20 C -0.064 4.064 21 C 0.141 3.859 22 C -0.579 4.579 23 H 0.070 0.930 24 C -0.191 4.191 25 N -0.569 5.569 26 Si 0.790 3.210 27 H -0.185 1.185 28 H -0.204 1.204 29 H -0.202 1.202 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.154 0.846 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.144 0.856 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.108 0.892 50 H 0.039 0.961 51 H 0.015 0.985 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.285 2.334 6.955 26.328 hybrid contribution 0.985 -0.610 0.316 1.201 sum -24.299 1.724 7.271 25.422 Atomic orbital electron populations 1.21842 0.93264 1.02337 1.02580 1.21220 0.96702 0.96609 0.96316 1.21736 1.00670 0.95502 1.01555 1.21741 0.85506 0.98507 0.95454 0.93323 1.22732 1.01097 0.96303 0.87935 1.61955 1.08949 1.54310 1.01454 1.23285 0.90293 1.01189 0.97226 1.20661 0.90412 0.75174 0.73240 1.93188 1.97043 1.30186 1.96089 1.93184 1.90859 1.88155 1.44547 1.93098 1.76796 1.87291 1.59673 1.22064 0.85074 1.00053 0.98166 1.22182 1.00183 0.95367 0.89464 1.61782 1.07653 1.54718 1.00839 1.22003 0.90624 0.99499 0.95962 1.21115 0.90197 0.78914 0.81162 1.90602 1.72707 1.42339 1.39824 1.48184 1.09167 1.54074 1.23250 1.21909 0.97791 0.96337 0.90338 1.18693 0.76173 0.95347 0.95696 1.21661 0.91973 1.07624 1.36685 0.92956 1.25850 0.98345 0.98870 0.96050 1.70050 1.07620 1.33395 1.45813 0.85494 0.77266 0.79401 0.78814 1.18547 1.20425 1.20230 0.92308 0.91353 0.92173 0.90296 0.94061 0.92190 0.92655 0.93150 0.87738 0.84607 0.88270 0.93898 0.88476 0.94483 0.91228 0.85612 0.90824 0.91091 0.91653 0.89187 0.96128 0.98483 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.84 71.98 0.64 -1.22 16 2 C -0.09 -1.52 2.31 -10.79 -0.02 -1.54 16 3 C -0.14 -2.65 8.68 71.98 0.62 -2.02 16 4 C 0.10 1.97 1.78 44.92 0.08 2.05 16 5 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 6 C 0.05 0.88 3.92 86.31 0.34 1.22 16 7 N -0.54 -10.37 4.46 -895.70 -3.99 -14.36 16 8 C 0.01 0.14 5.12 86.31 0.44 0.58 16 9 C 0.46 7.50 3.27 71.98 0.24 7.74 16 10 F -0.18 -3.68 17.13 44.97 0.77 -2.91 16 11 F -0.19 -3.06 17.32 44.97 0.78 -2.28 16 12 F -0.19 -3.22 14.70 44.97 0.66 -2.56 16 13 C 0.07 1.67 5.56 86.31 0.48 2.15 16 14 C 0.06 1.62 5.26 86.31 0.45 2.08 16 15 N -0.52 -14.23 3.49 -875.02 -3.06 -17.29 16 16 C 0.05 1.38 3.77 85.55 0.32 1.70 16 17 C 0.50 20.26 7.37 87.65 0.65 20.91 16 18 O -0.58 -29.02 13.93 -3.04 -0.04 -29.06 16 19 N -0.61 -25.77 2.86 -851.15 -2.43 -28.20 16 20 C 0.08 2.29 10.24 127.77 1.31 3.60 16 21 C 0.26 14.18 5.16 85.63 0.44 14.62 16 22 C -0.54 -31.11 9.39 25.60 0.24 -30.87 16 23 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 24 C 0.01 0.45 5.46 84.66 0.46 0.91 16 25 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 26 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 27 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 30 H 0.06 0.76 6.47 -2.39 -0.02 0.75 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 1.28 6.15 -2.39 -0.01 1.27 16 34 H 0.04 1.05 7.60 -2.39 -0.02 1.04 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 1.02 6.39 -2.39 -0.02 1.00 16 37 H 0.05 1.01 6.34 -2.39 -0.02 0.99 16 38 H 0.10 1.78 3.96 -2.39 -0.01 1.77 16 39 H 0.14 1.45 7.83 -2.39 -0.02 1.43 16 40 H 0.10 1.13 7.98 -2.38 -0.02 1.11 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.89 8.00 -2.39 -0.02 1.87 16 43 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 2.62 5.86 -2.39 -0.01 2.60 16 45 H 0.13 2.86 5.69 -2.39 -0.01 2.85 16 46 H 0.07 1.83 7.38 -2.39 -0.02 1.81 16 47 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 49 H 0.09 1.98 6.44 -2.39 -0.02 1.96 16 50 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 51 H 0.00 -0.19 7.42 -2.38 -0.02 -0.20 16 52 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -73.25 406.93 2.61 -70.64 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.93 Total: 13.41 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.69 Total: 21.89 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -9.20 Total: -115.94 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.04 Total: -29.06 kcal Atomic # 9 Polarization: -9.96 SS G_CDS: 2.21 Total: -7.75 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.25 2.61 -70.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095468496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.367 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds