Wall clock time and date at job start Tue Mar 31 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46784 * 2 1 4 4 C 1.50701 * 109.46702 * 119.99564 * 2 1 3 5 5 H 1.08001 * 120.00315 * 120.00144 * 4 2 1 6 6 C 1.37879 * 120.00088 * 299.99762 * 4 2 1 7 7 N 1.31517 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00177 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46983 * 90.00261 * 8 6 4 10 10 H 1.48498 * 109.47437 * 210.00278 * 8 6 4 11 11 H 1.48505 * 109.47102 * 330.00523 * 8 6 4 12 12 S 1.81396 * 109.47529 * 239.99454 * 2 1 3 13 13 C 1.76204 * 103.00007 * 70.57584 * 12 2 1 14 14 C 1.38791 * 120.10193 * 6.93534 * 13 12 2 15 15 C 1.38194 * 119.98913 * 180.02562 * 14 13 12 16 16 C 1.38305 * 120.19447 * 0.02562 * 15 14 13 17 17 C 1.38241 * 120.21391 * 359.69842 * 16 15 14 18 18 C 1.38649 * 120.00826 * 0.55984 * 17 16 15 19 19 N 1.40139 * 120.10053 * 179.74632 * 18 17 16 20 20 C 1.34777 * 120.00207 * 326.84072 * 19 18 17 21 21 O 1.21299 * 119.99704 * 5.09851 * 20 19 18 22 22 C 1.50692 * 120.00091 * 185.09966 * 20 19 18 23 23 N 1.46905 * 109.47366 * 181.63819 * 22 20 19 24 24 C 1.47019 * 110.99906 * 293.15166 * 23 22 20 25 25 C 1.53098 * 109.25639 * 177.60377 * 24 23 22 26 26 O 1.43011 * 109.25912 * 56.84699 * 25 24 23 27 27 C 1.43025 * 113.73978 * 301.32749 * 26 25 24 28 28 C 1.47004 * 111.00531 * 169.51204 * 23 22 20 29 29 H 1.09005 * 109.50766 * 62.45513 * 28 23 22 30 30 C 1.53010 * 109.50694 * 302.32792 * 28 23 22 31 31 H 1.08999 * 109.47126 * 185.76720 * 1 2 3 32 32 H 1.08997 * 109.47442 * 305.77206 * 1 2 3 33 33 H 1.09004 * 109.46579 * 65.77011 * 1 2 3 34 34 H 0.96999 * 120.00305 * 179.97438 * 7 6 4 35 35 H 1.07999 * 120.00306 * 0.03935 * 14 13 12 36 36 H 1.07996 * 119.90269 * 179.97438 * 15 14 13 37 37 H 1.08006 * 119.88647 * 179.97438 * 16 15 14 38 38 H 1.08007 * 119.99590 * 180.29955 * 17 16 15 39 39 H 0.97003 * 120.00065 * 146.84155 * 19 18 17 40 40 H 1.09003 * 109.47241 * 61.63918 * 22 20 19 41 41 H 1.09001 * 109.47767 * 301.63935 * 22 20 19 42 42 H 1.09003 * 109.50406 * 297.53693 * 24 23 22 43 43 H 1.09003 * 109.50992 * 57.66646 * 24 23 22 44 44 H 1.09001 * 109.50228 * 176.77657 * 25 24 23 45 45 H 1.08998 * 109.50734 * 296.86684 * 25 24 23 46 46 H 1.08999 * 109.50502 * 178.60455 * 27 26 25 47 47 H 1.08994 * 109.50310 * 298.69449 * 27 26 25 48 48 H 1.08999 * 109.46580 * 59.99862 * 30 28 23 49 49 H 1.08993 * 109.47264 * 179.97438 * 30 28 23 50 50 H 1.08994 * 109.46730 * 300.00299 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3211 -1.1200 4.0081 9 1 3.6294 -0.5456 4.4126 10 1 1.3428 -0.9489 5.1121 11 1 2.4856 -2.5660 3.7122 12 16 2.1348 -0.8552 -1.4810 13 6 1.7287 0.2649 -2.7792 14 6 1.2259 1.5236 -2.4806 15 6 0.9076 2.4000 -3.5006 16 6 1.0881 2.0267 -4.8201 17 6 1.5937 0.7771 -5.1266 18 6 1.9108 -0.1110 -4.1103 19 7 2.4185 -1.3802 -4.4190 20 6 2.0154 -2.0132 -5.5385 21 8 1.2857 -1.4480 -6.3255 22 6 2.4714 -3.4231 -5.8126 23 7 1.9313 -3.8703 -7.1035 24 6 0.4678 -3.9986 -7.0462 25 6 -0.0574 -4.4077 -8.4249 26 8 0.5773 -5.6235 -8.8299 27 6 2.0032 -5.5341 -8.8969 28 6 2.5492 -5.1364 -7.5231 29 1 2.3123 -5.9150 -6.7979 30 6 4.0669 -4.9608 -7.6079 31 1 -0.3633 -1.0224 0.1033 32 1 -0.3634 0.6007 0.8338 33 1 -0.3632 0.4218 -0.9372 34 1 0.7080 1.1612 3.4843 35 1 1.0836 1.8181 -1.4514 36 1 0.5161 3.3789 -3.2667 37 1 0.8373 2.7155 -5.6133 38 1 1.7377 0.4911 -6.1581 39 1 3.0600 -1.8032 -3.8270 40 1 2.1129 -4.0813 -5.0211 41 1 3.5605 -3.4531 -5.8445 42 1 0.1976 -4.7590 -6.3135 43 1 0.0296 -3.0430 -6.7586 44 1 -1.1356 -4.5597 -8.3731 45 1 0.1652 -3.6221 -9.1470 46 1 2.4152 -6.5007 -9.1866 47 1 2.2863 -4.7821 -9.6334 48 1 4.4545 -4.6740 -6.6304 49 1 4.5245 -5.9000 -7.9186 50 1 4.3025 -4.1834 -8.3346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:48 Heat of formation + Delta-G solvation = -41.983271 kcal Electronic energy + Delta-G solvation = -30534.766905 eV Core-core repulsion = 26460.451611 eV Total energy + Delta-G solvation = -4074.315294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -40.70964 -39.68924 -38.12570 -36.06425 -34.73560 -34.13957 -32.83819 -31.13703 -30.40114 -29.98032 -28.80104 -27.42324 -25.43508 -25.28162 -23.02659 -22.76318 -22.35806 -21.31122 -20.46006 -20.15792 -18.06469 -17.32373 -16.88718 -16.48490 -16.36545 -16.16253 -15.92918 -15.33625 -15.22659 -15.00056 -14.92639 -14.46949 -14.19346 -14.00231 -13.70541 -13.53088 -13.38081 -13.14483 -12.87658 -12.55376 -12.52381 -12.30517 -12.02480 -12.00249 -11.78191 -11.57712 -11.41311 -11.29591 -11.16339 -11.07626 -10.79188 -10.66528 -10.55188 -10.27776 -10.06674 -9.96790 -9.56821 -9.46899 -9.16950 -8.99237 -8.66869 -8.57971 -8.04247 -6.62202 -6.28331 -4.37358 1.49550 1.69548 2.37756 2.59724 2.88896 3.17424 3.24343 3.27894 3.51416 3.57961 3.65598 4.08021 4.24115 4.37167 4.51650 4.61288 4.78046 4.85802 4.94448 5.02776 5.04324 5.04417 5.16818 5.27352 5.28862 5.33454 5.35648 5.44556 5.54319 5.57594 5.65003 5.69488 5.82396 5.83027 5.85189 6.20691 6.43848 6.51767 6.54306 6.57507 6.64621 6.68271 6.70384 6.74230 6.85463 6.88335 7.25211 7.29642 7.46518 7.53858 7.69764 7.92844 8.14017 8.61257 9.27137 10.78151 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.002361 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.867768 B =11854.169654 C =13246.017071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.101 3.899 3 H 0.052 0.948 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.072 3.928 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.272 1.272 12 S -0.175 6.175 13 C -0.088 4.088 14 C -0.117 4.117 15 C -0.116 4.116 16 C -0.125 4.125 17 C -0.110 4.110 18 C 0.145 3.855 19 N -0.662 5.662 20 C 0.516 3.484 21 O -0.510 6.510 22 C 0.031 3.969 23 N -0.513 5.513 24 C 0.011 3.989 25 C 0.067 3.933 26 O -0.388 6.388 27 C 0.071 3.929 28 C 0.043 3.957 29 H 0.052 0.948 30 C -0.149 4.149 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.039 0.961 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -7.366 -19.384 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.552 4.552 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.072 5.928 13 C -0.203 4.203 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.147 4.147 17 C -0.131 4.131 18 C 0.045 3.955 19 N -0.307 5.307 20 C 0.303 3.697 21 O -0.384 6.384 22 C -0.100 4.100 23 N -0.239 5.239 24 C -0.116 4.116 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.006 4.006 28 C -0.066 4.066 29 H 0.070 0.930 30 C -0.207 4.207 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.157 0.843 39 H 0.249 0.751 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.057 0.943 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.017 -7.886 -20.163 21.860 hybrid contribution -0.059 0.327 2.114 2.140 sum 2.958 -7.558 -18.049 19.791 Atomic orbital electron populations 1.22086 0.96187 1.01432 1.00162 1.21091 0.95642 0.97263 0.88599 0.93045 1.20613 1.32754 1.13286 0.88595 0.91519 1.24890 0.94588 0.94942 0.98874 1.69870 1.35660 1.22491 1.24222 0.86350 0.78655 0.80015 0.81645 1.20326 1.20912 1.19621 1.85004 1.75635 1.30439 1.01698 1.21823 1.03881 0.99036 0.95563 1.21291 0.99879 0.92393 1.00553 1.21044 1.00617 0.99374 0.92624 1.20944 1.01352 0.96185 0.96250 1.21152 1.00364 0.92460 0.99127 1.17178 1.01713 0.85105 0.91486 1.43443 1.45083 1.17170 1.25030 1.20523 0.80445 0.88018 0.80686 1.90635 1.35609 1.66854 1.45334 1.22053 1.02398 0.93391 0.92176 1.61904 1.05425 1.29112 1.27481 1.23008 0.87610 1.03095 0.97929 1.22654 0.97254 0.86652 0.94442 1.87974 1.19079 1.34841 1.88771 1.22682 0.81024 1.01914 0.94982 1.22367 0.95635 0.90482 0.98071 0.92985 1.21881 0.93320 1.02609 1.02880 0.94026 0.89026 0.96201 0.92366 0.84532 0.86195 0.86230 0.84254 0.75150 0.91110 0.86990 0.94257 0.87412 0.88409 0.91994 0.88491 0.92134 0.91925 0.91583 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.43 37.16 0.31 -2.90 16 2 C 0.10 2.41 1.97 -27.88 -0.05 2.35 16 3 H 0.05 1.30 6.76 -51.92 -0.35 0.95 16 4 C -0.51 -13.33 8.58 -34.44 -0.30 -13.63 16 5 H 0.07 1.74 7.71 -52.49 -0.40 1.33 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -23.60 11.38 55.43 0.63 -22.97 16 8 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 S -0.18 -3.55 20.07 -107.50 -2.16 -5.71 16 13 C -0.09 -1.63 5.98 -38.90 -0.23 -1.86 16 14 C -0.12 -2.12 8.07 -39.39 -0.32 -2.44 16 15 C -0.12 -1.80 10.04 -39.57 -0.40 -2.20 16 16 C -0.13 -1.84 10.04 -39.56 -0.40 -2.24 16 17 C -0.11 -1.74 8.72 -39.43 -0.34 -2.09 16 18 C 0.15 2.44 6.35 -83.43 -0.53 1.91 16 19 N -0.66 -9.35 5.05 -9.71 -0.05 -9.40 16 20 C 0.52 6.89 7.43 -10.99 -0.08 6.81 16 21 O -0.51 -8.07 11.63 5.54 0.06 -8.00 16 22 C 0.03 0.31 5.24 -4.98 -0.03 0.28 16 23 N -0.51 -5.37 4.27 -227.76 -0.97 -6.34 16 24 C 0.01 0.12 5.29 -3.71 -0.02 0.10 16 25 C 0.07 0.67 7.01 37.21 0.26 0.93 16 26 O -0.39 -4.17 10.83 -35.23 -0.38 -4.55 16 27 C 0.07 0.60 6.29 37.21 0.23 0.83 16 28 C 0.04 0.36 2.59 -67.60 -0.17 0.19 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 C -0.15 -0.97 8.93 37.16 0.33 -0.63 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 2.28 6.25 -51.93 -0.32 1.96 16 33 H 0.02 0.41 6.26 -51.93 -0.32 0.09 16 34 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.14 2.66 5.06 -52.49 -0.27 2.40 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 38 H 0.14 2.20 6.06 -52.48 -0.32 1.88 16 39 H 0.41 5.23 7.91 -40.82 -0.32 4.91 16 40 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 41 H 0.11 0.89 5.73 -51.93 -0.30 0.59 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.11 1.40 5.87 -51.93 -0.30 1.09 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.38 6.15 -51.93 -0.32 0.06 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 399.90 15.07 6.03 6.03 Total: -1.00 -29.14 399.90 -11.13 -40.26 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.44 Total: 8.31 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.83 Total: -12.82 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.39 Total: -38.71 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.32 Total: -12.55 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.16 Total: -5.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.14 -11.13 -40.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.723 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds