Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46784 * 2 1 4 4 C 1.50701 * 109.46702 * 119.99564 * 2 1 3 5 5 H 1.08001 * 120.00315 * 120.00144 * 4 2 1 6 6 C 1.37879 * 120.00088 * 299.99762 * 4 2 1 7 7 N 1.31517 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00177 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46983 * 90.00261 * 8 6 4 10 10 H 1.48498 * 109.47437 * 210.00278 * 8 6 4 11 11 H 1.48505 * 109.47102 * 330.00523 * 8 6 4 12 12 S 1.81396 * 109.47529 * 239.99454 * 2 1 3 13 13 C 1.76204 * 103.00007 * 70.57584 * 12 2 1 14 14 C 1.38791 * 120.10193 * 6.93534 * 13 12 2 15 15 C 1.38194 * 119.98913 * 180.02562 * 14 13 12 16 16 C 1.38305 * 120.19447 * 0.02562 * 15 14 13 17 17 C 1.38241 * 120.21391 * 359.69842 * 16 15 14 18 18 C 1.38649 * 120.00826 * 0.55984 * 17 16 15 19 19 N 1.40139 * 120.10053 * 179.74632 * 18 17 16 20 20 C 1.34777 * 120.00207 * 326.84072 * 19 18 17 21 21 O 1.21299 * 119.99704 * 5.09851 * 20 19 18 22 22 C 1.50692 * 120.00091 * 185.09966 * 20 19 18 23 23 N 1.46905 * 109.47366 * 181.63819 * 22 20 19 24 24 C 1.47019 * 110.99906 * 293.15166 * 23 22 20 25 25 C 1.53098 * 109.25639 * 177.60377 * 24 23 22 26 26 O 1.43011 * 109.25912 * 56.84699 * 25 24 23 27 27 C 1.43025 * 113.73978 * 301.32749 * 26 25 24 28 28 C 1.47004 * 111.00531 * 169.51204 * 23 22 20 29 29 H 1.09005 * 109.50766 * 62.45513 * 28 23 22 30 30 C 1.53010 * 109.50694 * 302.32792 * 28 23 22 31 31 H 1.08999 * 109.47126 * 185.76720 * 1 2 3 32 32 H 1.08997 * 109.47442 * 305.77206 * 1 2 3 33 33 H 1.09004 * 109.46579 * 65.77011 * 1 2 3 34 34 H 0.96999 * 120.00305 * 179.97438 * 7 6 4 35 35 H 1.07999 * 120.00306 * 0.03935 * 14 13 12 36 36 H 1.07996 * 119.90269 * 179.97438 * 15 14 13 37 37 H 1.08006 * 119.88647 * 179.97438 * 16 15 14 38 38 H 1.08007 * 119.99590 * 180.29955 * 17 16 15 39 39 H 0.97003 * 120.00065 * 146.84155 * 19 18 17 40 40 H 1.09003 * 109.47241 * 61.63918 * 22 20 19 41 41 H 1.09001 * 109.47767 * 301.63935 * 22 20 19 42 42 H 1.09003 * 109.50406 * 297.53693 * 24 23 22 43 43 H 1.09003 * 109.50992 * 57.66646 * 24 23 22 44 44 H 1.09001 * 109.50228 * 176.77657 * 25 24 23 45 45 H 1.08998 * 109.50734 * 296.86684 * 25 24 23 46 46 H 1.08999 * 109.50502 * 178.60455 * 27 26 25 47 47 H 1.08994 * 109.50310 * 298.69449 * 27 26 25 48 48 H 1.08999 * 109.46580 * 59.99862 * 30 28 23 49 49 H 1.08993 * 109.47264 * 179.97438 * 30 28 23 50 50 H 1.08994 * 109.46730 * 300.00299 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3211 -1.1200 4.0081 9 1 3.6294 -0.5456 4.4126 10 1 1.3428 -0.9489 5.1121 11 1 2.4856 -2.5660 3.7122 12 16 2.1348 -0.8552 -1.4810 13 6 1.7287 0.2649 -2.7792 14 6 1.2259 1.5236 -2.4806 15 6 0.9076 2.4000 -3.5006 16 6 1.0881 2.0267 -4.8201 17 6 1.5937 0.7771 -5.1266 18 6 1.9108 -0.1110 -4.1103 19 7 2.4185 -1.3802 -4.4190 20 6 2.0154 -2.0132 -5.5385 21 8 1.2857 -1.4480 -6.3255 22 6 2.4714 -3.4231 -5.8126 23 7 1.9313 -3.8703 -7.1035 24 6 0.4678 -3.9986 -7.0462 25 6 -0.0574 -4.4077 -8.4249 26 8 0.5773 -5.6235 -8.8299 27 6 2.0032 -5.5341 -8.8969 28 6 2.5492 -5.1364 -7.5231 29 1 2.3123 -5.9150 -6.7979 30 6 4.0669 -4.9608 -7.6079 31 1 -0.3633 -1.0224 0.1033 32 1 -0.3634 0.6007 0.8338 33 1 -0.3632 0.4218 -0.9372 34 1 0.7080 1.1612 3.4843 35 1 1.0836 1.8181 -1.4514 36 1 0.5161 3.3789 -3.2667 37 1 0.8373 2.7155 -5.6133 38 1 1.7377 0.4911 -6.1581 39 1 3.0600 -1.8032 -3.8270 40 1 2.1129 -4.0813 -5.0211 41 1 3.5605 -3.4531 -5.8445 42 1 0.1976 -4.7590 -6.3135 43 1 0.0296 -3.0430 -6.7586 44 1 -1.1356 -4.5597 -8.3731 45 1 0.1652 -3.6221 -9.1470 46 1 2.4152 -6.5007 -9.1866 47 1 2.2863 -4.7821 -9.6334 48 1 4.4545 -4.6740 -6.6304 49 1 4.5245 -5.9000 -7.9186 50 1 4.3025 -4.1834 -8.3346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -58.987047 kcal Electronic energy + Delta-G solvation = -30535.504245 eV Core-core repulsion = 26460.451611 eV Total energy + Delta-G solvation = -4075.052633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 6.88 seconds Orbital eigenvalues (eV) -41.74434 -40.60195 -39.30443 -36.88146 -36.24894 -35.72219 -33.53895 -32.81881 -31.59878 -31.41880 -29.80735 -28.08717 -27.39684 -26.14708 -24.16486 -23.75735 -23.64442 -22.99829 -21.47261 -21.02250 -19.42223 -18.40391 -18.22073 -17.84640 -17.31735 -17.26934 -16.93655 -16.78487 -16.27138 -16.09348 -15.89129 -15.74643 -15.41884 -15.09616 -15.02094 -14.83054 -14.45767 -14.22836 -14.20585 -13.90347 -13.77689 -13.25836 -13.16715 -13.00137 -12.88855 -12.88094 -12.75904 -12.68705 -12.46244 -12.33878 -12.23382 -12.07693 -11.81741 -11.51945 -11.41104 -11.33310 -10.88518 -10.83203 -10.63235 -10.53249 -10.41918 -9.47695 -9.31176 -8.25798 -8.15761 -6.41833 0.21788 0.36899 0.83981 1.41141 1.42400 1.51530 1.52801 1.81481 1.90872 2.37253 2.72134 2.79603 2.92758 3.04718 3.55689 3.73435 3.89849 3.92238 4.05510 4.13664 4.17224 4.18415 4.28313 4.32180 4.39802 4.45872 4.50427 4.53694 4.58997 4.68965 4.73177 4.79639 4.82131 4.82404 4.87854 4.90088 4.92294 5.03174 5.20704 5.29294 5.30830 5.32780 5.47966 5.55737 5.58341 5.71753 5.74196 5.90252 5.98620 6.03132 6.15075 6.36979 6.60704 7.05519 7.25859 8.80367 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.002361 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.867768 B =11854.169654 C =13246.017071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.097 3.903 3 H 0.027 0.973 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.268 1.268 12 S -0.166 6.166 13 C -0.112 4.112 14 C -0.132 4.132 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.116 4.116 18 C 0.146 3.854 19 N -0.661 5.661 20 C 0.516 3.484 21 O -0.534 6.534 22 C 0.036 3.964 23 N -0.524 5.524 24 C 0.014 3.986 25 C 0.070 3.930 26 O -0.403 6.403 27 C 0.066 3.934 28 C 0.043 3.957 29 H 0.051 0.949 30 C -0.145 4.145 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.268 0.732 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.418 0.582 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.036 0.964 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.119 0.881 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 -8.215 -20.814 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.031 4.031 3 H 0.045 0.955 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.791 3.209 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.192 1.192 12 S 0.081 5.919 13 C -0.227 4.227 14 C -0.157 4.157 15 C -0.136 4.136 16 C -0.132 4.132 17 C -0.138 4.138 18 C 0.045 3.955 19 N -0.307 5.307 20 C 0.305 3.695 21 O -0.411 6.411 22 C -0.094 4.094 23 N -0.250 5.250 24 C -0.114 4.114 25 C -0.007 4.007 26 O -0.322 6.322 27 C -0.010 4.010 28 C -0.065 4.065 29 H 0.069 0.931 30 C -0.203 4.203 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.255 0.745 40 H 0.098 0.902 41 H 0.155 0.845 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.076 0.924 46 H 0.137 0.863 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.919 -8.743 -21.615 23.644 hybrid contribution -0.341 0.644 2.389 2.498 sum 3.578 -8.099 -19.226 21.167 Atomic orbital electron populations 1.21879 0.96023 1.00414 0.99900 1.20830 0.95763 0.96230 0.90238 0.95501 1.20887 1.32984 1.13372 0.89933 0.92074 1.25673 0.94666 0.95560 1.01579 1.69979 1.36366 1.23503 1.24862 0.85412 0.78225 0.79011 0.78215 1.19790 1.20443 1.19209 1.84657 1.76196 1.30436 1.00631 1.21807 1.06169 0.99176 0.95541 1.21273 1.00923 0.93091 1.00397 1.21314 1.00017 0.99978 0.92322 1.21352 0.99037 0.96049 0.96754 1.21338 1.00528 0.92902 0.98995 1.17322 1.01076 0.86236 0.90848 1.43511 1.45147 1.16508 1.25508 1.21123 0.79647 0.88986 0.79780 1.90621 1.36646 1.67703 1.46080 1.22088 1.03801 0.91060 0.92456 1.61916 1.05045 1.30457 1.27571 1.22897 0.88305 1.01721 0.98432 1.22643 0.97930 0.86478 0.93649 1.87954 1.20453 1.35024 1.88776 1.22886 0.79956 1.03185 0.95001 1.22451 0.96803 0.89332 0.97869 0.93146 1.21871 0.91718 1.03546 1.03122 0.94794 0.91133 0.94935 0.92238 0.86612 0.83581 0.82724 0.83890 0.74456 0.90235 0.84459 0.94602 0.89562 0.87315 0.92438 0.86299 0.92192 0.91419 0.89706 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.43 71.98 0.61 -5.24 16 2 C 0.10 4.77 1.97 29.85 0.06 4.83 16 3 H 0.03 1.44 6.76 -2.39 -0.02 1.42 16 4 C -0.53 -28.28 8.58 25.60 0.22 -28.07 16 5 H 0.06 3.24 7.71 -2.91 -0.02 3.21 16 6 C 0.03 1.43 5.30 84.65 0.45 1.88 16 7 N -0.91 -49.54 11.38 21.45 0.24 -49.30 16 8 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 12 S -0.17 -6.81 20.07 -56.49 -1.13 -7.94 16 13 C -0.11 -4.17 5.98 22.71 0.14 -4.03 16 14 C -0.13 -4.84 8.07 22.39 0.18 -4.66 16 15 C -0.12 -3.42 10.04 22.28 0.22 -3.20 16 16 C -0.11 -2.98 10.04 22.29 0.22 -2.75 16 17 C -0.12 -3.51 8.72 22.37 0.19 -3.31 16 18 C 0.15 4.79 6.35 38.22 0.24 5.03 16 19 N -0.66 -18.13 5.05 -303.02 -1.53 -19.66 16 20 C 0.52 13.26 7.43 87.65 0.65 13.91 16 21 O -0.53 -16.54 11.63 -3.09 -0.04 -16.58 16 22 C 0.04 0.67 5.24 85.55 0.45 1.12 16 23 N -0.52 -10.24 4.27 -874.51 -3.74 -13.98 16 24 C 0.01 0.31 5.29 86.31 0.46 0.77 16 25 C 0.07 1.35 7.01 72.01 0.50 1.86 16 26 O -0.40 -8.16 10.83 -148.98 -1.61 -9.77 16 27 C 0.07 0.99 6.29 72.01 0.45 1.44 16 28 C 0.04 0.65 2.59 44.93 0.12 0.76 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 C -0.15 -1.49 8.93 71.99 0.64 -0.84 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 3.64 6.25 -2.39 -0.01 3.63 16 33 H 0.03 1.41 6.26 -2.39 -0.01 1.40 16 34 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.12 4.70 5.06 -2.91 -0.01 4.68 16 36 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.14 4.28 6.06 -2.91 -0.02 4.26 16 39 H 0.42 10.27 7.91 -92.71 -0.73 9.53 16 40 H 0.08 1.37 8.11 -2.39 -0.02 1.36 16 41 H 0.14 1.83 5.73 -2.39 -0.01 1.82 16 42 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 2.25 5.87 -2.39 -0.01 2.24 16 44 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.63 6.15 -2.39 -0.01 0.61 16 49 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -63.57 399.90 0.26 -63.31 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.23 Total: 30.80 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 5.81 Total: -20.50 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -5.02 Total: -82.94 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.65 Total: -26.35 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.13 Total: -7.94 kcal Total: -63.57 0.26 -63.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -63.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.88 seconds