Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47610 * 2 1 4 4 C 1.50702 * 109.47121 * 120.00415 * 2 1 3 5 5 H 1.08009 * 119.99795 * 119.99644 * 4 2 1 6 6 C 1.37870 * 120.00117 * 299.99829 * 4 2 1 7 7 N 1.31516 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00222 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47007 * 119.99875 * 8 6 4 11 11 H 1.48501 * 109.47125 * 239.99701 * 8 6 4 12 12 S 1.81402 * 109.46940 * 240.00017 * 2 1 3 13 13 C 1.76199 * 102.99951 * 70.12596 * 12 2 1 14 14 C 1.38788 * 120.10401 * 5.26039 * 13 12 2 15 15 C 1.38196 * 119.98626 * 179.72157 * 14 13 12 16 16 C 1.38293 * 120.20100 * 0.55730 * 15 14 13 17 17 C 1.38247 * 120.21391 * 359.72461 * 16 15 14 18 18 C 1.38649 * 120.00555 * 359.97438 * 17 16 15 19 19 N 1.40135 * 120.10038 * 179.97438 * 18 17 16 20 20 C 1.34781 * 120.00094 * 24.80258 * 19 18 17 21 21 O 1.21294 * 119.99525 * 5.59595 * 20 19 18 22 22 C 1.50696 * 120.00231 * 185.59633 * 20 19 18 23 23 N 1.46896 * 109.46980 * 180.02562 * 22 20 19 24 24 C 1.47016 * 111.00494 * 66.04664 * 23 22 20 25 25 C 1.53094 * 109.25854 * 182.39392 * 24 23 22 26 26 O 1.43020 * 109.25662 * 303.14451 * 25 24 23 27 27 C 1.43011 * 113.73539 * 58.67447 * 26 25 24 28 28 C 1.47023 * 110.99937 * 189.67756 * 23 22 20 29 29 H 1.08999 * 109.50510 * 297.54477 * 28 23 22 30 30 C 1.53000 * 109.50451 * 57.66865 * 28 23 22 31 31 H 1.09004 * 109.46621 * 295.04916 * 1 2 3 32 32 H 1.08997 * 109.47058 * 55.04731 * 1 2 3 33 33 H 1.08995 * 109.47506 * 175.05048 * 1 2 3 34 34 H 0.96997 * 120.00553 * 180.02562 * 7 6 4 35 35 H 1.08000 * 120.00646 * 359.97438 * 14 13 12 36 36 H 1.08000 * 119.89692 * 180.25760 * 15 14 13 37 37 H 1.08003 * 119.89620 * 179.74118 * 16 15 14 38 38 H 1.07997 * 119.99768 * 180.02562 * 17 16 15 39 39 H 0.97007 * 120.00314 * 204.79826 * 19 18 17 40 40 H 1.09004 * 109.46890 * 299.99945 * 22 20 19 41 41 H 1.08997 * 109.47825 * 59.99437 * 22 20 19 42 42 H 1.09000 * 109.50236 * 302.32741 * 24 23 22 43 43 H 1.09000 * 109.50816 * 62.40476 * 24 23 22 44 44 H 1.08997 * 109.50854 * 63.08571 * 25 24 23 45 45 H 1.09002 * 109.50097 * 183.21467 * 25 24 23 46 46 H 1.09000 * 109.50781 * 61.26318 * 27 26 25 47 47 H 1.09004 * 109.50458 * 181.35111 * 27 26 25 48 48 H 1.09006 * 109.47003 * 60.00230 * 30 28 23 49 49 H 1.08994 * 109.47094 * 179.97438 * 30 28 23 50 50 H 1.08995 * 109.47568 * 300.00208 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3225 -1.1198 4.0079 9 1 3.1485 -2.2859 3.6037 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5869 4.8164 12 16 2.1346 -0.8551 -1.4812 13 6 1.7164 0.2590 -2.7805 14 6 1.1743 1.5019 -2.4844 15 6 0.8526 2.3761 -3.5051 16 6 1.0584 2.0122 -4.8234 17 6 1.5924 0.7740 -5.1281 18 6 1.9242 -0.1074 -4.1106 19 7 2.4652 -1.3632 -4.4173 20 6 3.1204 -1.5490 -5.5804 21 8 3.3304 -0.6071 -6.3152 22 6 3.5919 -2.9268 -5.9679 23 7 4.2728 -2.8637 -7.2680 24 6 5.5147 -2.0823 -7.1750 25 6 6.1593 -1.9919 -8.5606 26 8 6.3865 -3.3118 -9.0622 27 6 5.1981 -4.1005 -9.1664 28 6 4.5437 -4.2123 -7.7870 29 1 5.2154 -4.7360 -7.1068 30 6 3.2298 -4.9872 -7.9060 31 1 -0.3633 0.4351 0.9311 32 1 -0.3633 0.5887 -0.8423 33 1 -0.3634 -1.0238 -0.0887 34 1 0.7096 1.1616 3.4845 35 1 1.0078 1.7873 -1.4562 36 1 0.4347 3.3445 -3.2728 37 1 0.8013 2.6977 -5.6174 38 1 1.7520 0.4937 -6.1588 39 1 2.3682 -2.0989 -3.7924 40 1 4.2844 -3.2995 -5.2131 41 1 2.7357 -3.5977 -6.0380 42 1 5.2875 -1.0796 -6.8130 43 1 6.2016 -2.5715 -6.4843 44 1 5.4945 -1.4548 -9.2370 45 1 7.1092 -1.4623 -8.4862 46 1 4.5052 -3.6247 -9.8605 47 1 5.4525 -5.0957 -9.5310 48 1 2.5596 -4.4636 -8.5879 49 1 3.4311 -5.9867 -8.2913 50 1 2.7624 -5.0631 -6.9243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = -40.260222 kcal Electronic energy + Delta-G solvation = -30456.060089 eV Core-core repulsion = 26381.819512 eV Total energy + Delta-G solvation = -4074.240577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.75546 -39.71530 -38.12626 -36.08419 -34.76517 -34.16522 -32.85893 -31.14595 -30.41921 -29.96437 -28.81108 -27.43506 -25.44962 -25.30112 -23.05515 -22.79672 -22.36281 -21.31048 -20.46612 -20.15968 -18.07940 -17.33058 -16.89990 -16.49246 -16.38403 -16.17988 -15.93643 -15.38528 -15.24690 -15.03338 -14.88945 -14.47174 -14.16162 -14.06373 -13.73618 -13.53879 -13.40477 -13.18163 -12.76837 -12.65217 -12.53563 -12.32990 -12.05949 -11.94911 -11.79375 -11.62579 -11.44935 -11.32550 -11.11479 -11.06369 -10.80538 -10.64648 -10.52044 -10.38197 -10.10459 -9.98051 -9.54327 -9.50394 -9.15774 -9.02346 -8.69194 -8.57042 -7.98407 -6.61545 -6.28372 -4.38139 1.49210 1.69550 2.37167 2.60737 2.85641 3.16196 3.24631 3.28972 3.49143 3.57220 3.63858 4.10018 4.23871 4.35869 4.48418 4.59627 4.76645 4.83455 4.91506 5.00973 5.01876 5.03760 5.14890 5.26301 5.28508 5.33897 5.34543 5.43049 5.52839 5.58150 5.63285 5.67015 5.81725 5.82415 5.84124 6.20766 6.41344 6.48928 6.53887 6.56816 6.62653 6.67293 6.71699 6.74337 6.86066 6.86994 7.22992 7.29581 7.46375 7.53650 7.70551 7.94954 8.10801 8.61106 9.26584 10.77347 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.002280 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.232014 B =12276.459528 C =13638.796624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.101 3.899 3 H 0.052 0.948 4 C -0.510 4.510 5 H 0.067 0.933 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.177 6.177 13 C -0.092 4.092 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.118 4.118 18 C 0.150 3.850 19 N -0.661 5.661 20 C 0.514 3.486 21 O -0.507 6.507 22 C 0.031 3.969 23 N -0.513 5.513 24 C 0.011 3.989 25 C 0.067 3.933 26 O -0.388 6.388 27 C 0.071 3.929 28 C 0.043 3.957 29 H 0.052 0.948 30 C -0.150 4.150 31 H 0.097 0.903 32 H 0.021 0.979 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.413 0.587 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -7.154 -19.858 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.070 5.930 13 C -0.207 4.207 14 C -0.139 4.139 15 C -0.141 4.141 16 C -0.144 4.144 17 C -0.139 4.139 18 C 0.049 3.951 19 N -0.306 5.306 20 C 0.301 3.699 21 O -0.382 6.382 22 C -0.100 4.100 23 N -0.239 5.239 24 C -0.117 4.117 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.006 4.006 28 C -0.065 4.065 29 H 0.070 0.930 30 C -0.207 4.207 31 H 0.115 0.885 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.115 0.885 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.998 -7.409 -20.607 22.260 hybrid contribution -0.201 0.201 2.095 2.114 sum 3.797 -7.207 -18.512 20.225 Atomic orbital electron populations 1.22150 0.96247 1.00015 1.02059 1.21090 0.95631 0.97349 0.88513 0.93024 1.20661 1.32507 1.13258 0.88578 0.91470 1.24891 0.94642 0.94955 0.98892 1.69859 1.35822 1.22458 1.24121 0.86297 0.78730 0.79632 0.82018 1.19493 1.20686 1.20672 1.84994 1.75458 1.30795 1.01769 1.21748 1.04806 0.98889 0.95276 1.21312 0.99554 0.92447 1.00585 1.21033 1.00973 0.99389 0.92657 1.20938 1.00774 0.96421 0.96267 1.21199 0.99486 0.94024 0.99232 1.17213 0.99781 0.86502 0.91570 1.43531 1.54374 1.11945 1.20718 1.20530 0.77560 0.91081 0.80689 1.90622 1.54250 1.42463 1.50889 1.22060 1.01065 0.95034 0.91842 1.61912 1.23860 1.13770 1.24358 1.23008 0.89631 1.00948 0.98087 1.22655 1.00817 0.84043 0.93485 1.87974 1.31496 1.25573 1.85619 1.22683 0.86995 0.96097 0.94839 1.22369 0.97564 0.89011 0.97593 0.92992 1.21880 0.96352 0.99651 1.02825 0.88467 0.95995 0.94246 0.92396 0.84421 0.86219 0.86235 0.83913 0.74985 0.91317 0.86809 0.87440 0.94274 0.91964 0.88401 0.92116 0.88470 0.91280 0.91573 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.64 37.16 0.32 -2.97 16 2 C 0.10 2.41 1.97 -27.88 -0.06 2.35 16 3 H 0.05 1.32 6.87 -51.93 -0.36 0.96 16 4 C -0.51 -13.26 8.58 -34.44 -0.30 -13.56 16 5 H 0.07 1.76 7.71 -52.48 -0.40 1.35 16 6 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 7 N -0.89 -23.54 11.29 55.43 0.63 -22.91 16 8 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 S -0.18 -3.60 19.93 -107.50 -2.14 -5.75 16 13 C -0.09 -1.72 6.07 -38.90 -0.24 -1.95 16 14 C -0.11 -2.09 8.11 -39.39 -0.32 -2.41 16 15 C -0.12 -1.87 10.04 -39.58 -0.40 -2.27 16 16 C -0.12 -1.81 10.04 -39.56 -0.40 -2.21 16 17 C -0.12 -1.89 8.72 -39.43 -0.34 -2.23 16 18 C 0.15 2.53 6.44 -83.43 -0.54 1.99 16 19 N -0.66 -9.39 5.17 -9.71 -0.05 -9.44 16 20 C 0.51 6.81 7.34 -10.99 -0.08 6.73 16 21 O -0.51 -7.96 11.50 5.54 0.06 -7.90 16 22 C 0.03 0.30 5.23 -4.98 -0.03 0.28 16 23 N -0.51 -5.26 4.28 -227.78 -0.97 -6.23 16 24 C 0.01 0.12 5.29 -3.71 -0.02 0.10 16 25 C 0.07 0.65 7.01 37.21 0.26 0.91 16 26 O -0.39 -4.09 10.83 -35.23 -0.38 -4.47 16 27 C 0.07 0.58 6.29 37.21 0.23 0.82 16 28 C 0.04 0.36 2.59 -67.60 -0.17 0.18 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 C -0.15 -0.95 8.92 37.16 0.33 -0.62 16 31 H 0.10 2.41 5.95 -51.93 -0.31 2.11 16 32 H 0.02 0.44 5.98 -51.93 -0.31 0.13 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 35 H 0.14 2.70 4.81 -52.49 -0.25 2.44 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 38 H 0.14 2.27 5.79 -52.49 -0.30 1.97 16 39 H 0.41 5.37 7.65 -40.82 -0.31 5.06 16 40 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 41 H 0.11 0.90 5.77 -51.93 -0.30 0.60 16 42 H 0.11 1.36 5.85 -51.93 -0.30 1.05 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.38 6.17 -51.93 -0.32 0.06 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -29.05 398.80 -11.08 -40.13 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.38 Total: 8.52 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.83 Total: -13.14 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.40 Total: -38.59 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.32 Total: -12.36 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.14 Total: -5.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.05 -11.08 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.127 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds