Wall clock time and date at job start Tue Mar 31 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47610 * 2 1 4 4 C 1.50702 * 109.47121 * 120.00415 * 2 1 3 5 5 H 1.08009 * 119.99795 * 119.99644 * 4 2 1 6 6 C 1.37870 * 120.00117 * 299.99829 * 4 2 1 7 7 N 1.31516 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00222 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47007 * 119.99875 * 8 6 4 11 11 H 1.48501 * 109.47125 * 239.99701 * 8 6 4 12 12 S 1.81402 * 109.46940 * 240.00017 * 2 1 3 13 13 C 1.76199 * 102.99951 * 70.12596 * 12 2 1 14 14 C 1.38788 * 120.10401 * 5.26039 * 13 12 2 15 15 C 1.38196 * 119.98626 * 179.72157 * 14 13 12 16 16 C 1.38293 * 120.20100 * 0.55730 * 15 14 13 17 17 C 1.38247 * 120.21391 * 359.72461 * 16 15 14 18 18 C 1.38649 * 120.00555 * 359.97438 * 17 16 15 19 19 N 1.40135 * 120.10038 * 179.97438 * 18 17 16 20 20 C 1.34781 * 120.00094 * 24.80258 * 19 18 17 21 21 O 1.21294 * 119.99525 * 5.59595 * 20 19 18 22 22 C 1.50696 * 120.00231 * 185.59633 * 20 19 18 23 23 N 1.46896 * 109.46980 * 180.02562 * 22 20 19 24 24 C 1.47016 * 111.00494 * 66.04664 * 23 22 20 25 25 C 1.53094 * 109.25854 * 182.39392 * 24 23 22 26 26 O 1.43020 * 109.25662 * 303.14451 * 25 24 23 27 27 C 1.43011 * 113.73539 * 58.67447 * 26 25 24 28 28 C 1.47023 * 110.99937 * 189.67756 * 23 22 20 29 29 H 1.08999 * 109.50510 * 297.54477 * 28 23 22 30 30 C 1.53000 * 109.50451 * 57.66865 * 28 23 22 31 31 H 1.09004 * 109.46621 * 295.04916 * 1 2 3 32 32 H 1.08997 * 109.47058 * 55.04731 * 1 2 3 33 33 H 1.08995 * 109.47506 * 175.05048 * 1 2 3 34 34 H 0.96997 * 120.00553 * 180.02562 * 7 6 4 35 35 H 1.08000 * 120.00646 * 359.97438 * 14 13 12 36 36 H 1.08000 * 119.89692 * 180.25760 * 15 14 13 37 37 H 1.08003 * 119.89620 * 179.74118 * 16 15 14 38 38 H 1.07997 * 119.99768 * 180.02562 * 17 16 15 39 39 H 0.97007 * 120.00314 * 204.79826 * 19 18 17 40 40 H 1.09004 * 109.46890 * 299.99945 * 22 20 19 41 41 H 1.08997 * 109.47825 * 59.99437 * 22 20 19 42 42 H 1.09000 * 109.50236 * 302.32741 * 24 23 22 43 43 H 1.09000 * 109.50816 * 62.40476 * 24 23 22 44 44 H 1.08997 * 109.50854 * 63.08571 * 25 24 23 45 45 H 1.09002 * 109.50097 * 183.21467 * 25 24 23 46 46 H 1.09000 * 109.50781 * 61.26318 * 27 26 25 47 47 H 1.09004 * 109.50458 * 181.35111 * 27 26 25 48 48 H 1.09006 * 109.47003 * 60.00230 * 30 28 23 49 49 H 1.08994 * 109.47094 * 179.97438 * 30 28 23 50 50 H 1.08995 * 109.47568 * 300.00208 * 30 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3225 -1.1198 4.0079 9 1 3.1485 -2.2859 3.6037 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5869 4.8164 12 16 2.1346 -0.8551 -1.4812 13 6 1.7164 0.2590 -2.7805 14 6 1.1743 1.5019 -2.4844 15 6 0.8526 2.3761 -3.5051 16 6 1.0584 2.0122 -4.8234 17 6 1.5924 0.7740 -5.1281 18 6 1.9242 -0.1074 -4.1106 19 7 2.4652 -1.3632 -4.4173 20 6 3.1204 -1.5490 -5.5804 21 8 3.3304 -0.6071 -6.3152 22 6 3.5919 -2.9268 -5.9679 23 7 4.2728 -2.8637 -7.2680 24 6 5.5147 -2.0823 -7.1750 25 6 6.1593 -1.9919 -8.5606 26 8 6.3865 -3.3118 -9.0622 27 6 5.1981 -4.1005 -9.1664 28 6 4.5437 -4.2123 -7.7870 29 1 5.2154 -4.7360 -7.1068 30 6 3.2298 -4.9872 -7.9060 31 1 -0.3633 0.4351 0.9311 32 1 -0.3633 0.5887 -0.8423 33 1 -0.3634 -1.0238 -0.0887 34 1 0.7096 1.1616 3.4845 35 1 1.0078 1.7873 -1.4562 36 1 0.4347 3.3445 -3.2728 37 1 0.8013 2.6977 -5.6174 38 1 1.7520 0.4937 -6.1588 39 1 2.3682 -2.0989 -3.7924 40 1 4.2844 -3.2995 -5.2131 41 1 2.7357 -3.5977 -6.0380 42 1 5.2875 -1.0796 -6.8130 43 1 6.2016 -2.5715 -6.4843 44 1 5.4945 -1.4548 -9.2370 45 1 7.1092 -1.4623 -8.4862 46 1 4.5052 -3.6247 -9.8605 47 1 5.4525 -5.0957 -9.5310 48 1 2.5596 -4.4636 -8.5879 49 1 3.4311 -5.9867 -8.2913 50 1 2.7624 -5.0631 -6.9243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953647.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:54 Heat of formation + Delta-G solvation = -57.240702 kcal Electronic energy + Delta-G solvation = -30456.796418 eV Core-core repulsion = 26381.819512 eV Total energy + Delta-G solvation = -4074.976906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.161 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.78859 -40.61031 -39.30607 -36.88744 -36.26950 -35.74599 -33.54409 -32.82053 -31.59013 -31.41836 -29.81178 -28.08722 -27.39696 -26.15325 -24.19854 -23.75976 -23.64501 -22.99858 -21.45715 -21.02437 -19.43650 -18.39931 -18.22640 -17.86569 -17.34021 -17.24625 -16.95668 -16.78414 -16.31402 -16.10925 -15.88370 -15.67942 -15.44495 -15.10972 -15.06574 -14.78366 -14.44702 -14.30399 -14.19478 -13.95786 -13.67821 -13.27259 -13.17327 -12.99768 -12.90573 -12.88353 -12.73818 -12.69421 -12.45568 -12.29305 -12.21188 -12.08325 -11.84380 -11.53881 -11.47545 -11.35879 -10.86707 -10.84734 -10.60555 -10.50882 -10.46375 -9.48009 -9.25945 -8.25599 -8.14743 -6.42239 0.21906 0.36276 0.83212 1.39694 1.42416 1.52530 1.53868 1.78665 1.90406 2.37108 2.71401 2.80880 2.92612 3.04345 3.52263 3.73537 3.89221 3.91836 4.05712 4.13689 4.16263 4.18153 4.27909 4.32158 4.39867 4.45545 4.49942 4.52707 4.59733 4.68847 4.73282 4.81082 4.82389 4.87533 4.87906 4.89956 4.92303 5.02894 5.17803 5.29746 5.30855 5.32746 5.47106 5.56535 5.58319 5.73820 5.75504 5.89915 6.01898 6.03438 6.15058 6.35981 6.60681 7.02554 7.25619 8.80060 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.002280 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.232014 B =12276.459528 C =13638.796624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.098 3.902 3 H 0.024 0.976 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.275 1.275 12 S -0.169 6.169 13 C -0.116 4.116 14 C -0.130 4.130 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.125 4.125 18 C 0.150 3.850 19 N -0.660 5.660 20 C 0.515 3.485 21 O -0.532 6.532 22 C 0.037 3.963 23 N -0.524 5.524 24 C 0.014 3.986 25 C 0.070 3.930 26 O -0.403 6.403 27 C 0.066 3.934 28 C 0.044 3.956 29 H 0.052 0.948 30 C -0.146 4.146 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.418 0.582 40 H 0.081 0.919 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.119 0.881 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -8.291 -21.349 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 H 0.042 0.958 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.200 1.200 12 S 0.077 5.923 13 C -0.231 4.231 14 C -0.155 4.155 15 C -0.141 4.141 16 C -0.129 4.129 17 C -0.146 4.146 18 C 0.049 3.951 19 N -0.306 5.306 20 C 0.303 3.697 21 O -0.408 6.408 22 C -0.094 4.094 23 N -0.251 5.251 24 C -0.114 4.114 25 C -0.007 4.007 26 O -0.322 6.322 27 C -0.010 4.010 28 C -0.064 4.064 29 H 0.070 0.930 30 C -0.203 4.203 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.256 0.744 40 H 0.099 0.901 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.127 0.873 46 H 0.078 0.922 47 H 0.137 0.863 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.008 -8.560 -22.121 24.056 hybrid contribution -0.199 0.612 2.390 2.475 sum 3.809 -7.947 -19.731 21.610 Atomic orbital electron populations 1.21953 0.95721 0.99854 1.01407 1.20831 0.96050 0.96061 0.90066 0.95843 1.20917 1.32766 1.13321 0.89960 0.92185 1.25663 0.94721 0.95578 1.01551 1.69966 1.36463 1.23428 1.24801 0.85364 0.78315 0.78587 0.78591 1.19181 1.20365 1.19998 1.84655 1.76052 1.30787 1.00761 1.21731 1.07071 0.99074 0.95260 1.21292 1.00601 0.93137 1.00431 1.21302 1.00448 0.99945 0.92356 1.21346 0.98523 0.96244 0.96776 1.21388 0.99632 0.94508 0.99107 1.17363 0.99160 0.87621 0.90936 1.43607 1.54401 1.11240 1.21319 1.21149 0.76569 0.92179 0.79771 1.90608 1.55055 1.43651 1.51485 1.22096 1.02135 0.92996 0.92146 1.61921 1.23586 1.15059 1.24484 1.22899 0.90010 0.99932 0.98545 1.22647 1.01242 0.84090 0.92746 1.87954 1.32785 1.25820 1.85629 1.22883 0.86391 0.96851 0.94913 1.22447 0.98636 0.87982 0.97339 0.93035 1.21871 0.95090 1.00226 1.03104 0.90787 0.94542 0.94318 0.92212 0.86481 0.83616 0.82737 0.83561 0.74414 0.90091 0.84466 0.89559 0.94454 0.92483 0.87278 0.92247 0.86293 0.91777 0.89704 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.64 71.98 0.62 -5.43 16 2 C 0.10 4.80 1.97 29.85 0.06 4.85 16 3 H 0.02 1.27 6.87 -2.40 -0.02 1.25 16 4 C -0.53 -28.20 8.58 25.60 0.22 -27.98 16 5 H 0.06 3.20 7.71 -2.91 -0.02 3.18 16 6 C 0.03 1.40 5.29 84.65 0.45 1.85 16 7 N -0.91 -49.36 11.29 21.45 0.24 -49.12 16 8 Si 0.97 41.64 29.54 68.60 2.03 43.67 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 S -0.17 -6.96 19.93 -56.49 -1.13 -8.09 16 13 C -0.12 -4.36 6.07 22.71 0.14 -4.22 16 14 C -0.13 -4.79 8.11 22.39 0.18 -4.61 16 15 C -0.12 -3.57 10.04 22.27 0.22 -3.35 16 16 C -0.11 -2.92 10.04 22.29 0.22 -2.70 16 17 C -0.12 -3.80 8.72 22.37 0.20 -3.61 16 18 C 0.15 4.97 6.44 38.22 0.25 5.21 16 19 N -0.66 -18.25 5.17 -303.01 -1.57 -19.81 16 20 C 0.51 13.09 7.34 87.66 0.64 13.73 16 21 O -0.53 -16.31 11.50 -3.07 -0.04 -16.35 16 22 C 0.04 0.66 5.23 85.56 0.45 1.11 16 23 N -0.52 -10.01 4.28 -874.55 -3.74 -13.74 16 24 C 0.01 0.30 5.29 86.31 0.46 0.75 16 25 C 0.07 1.31 7.01 72.01 0.50 1.82 16 26 O -0.40 -7.97 10.83 -148.98 -1.61 -9.59 16 27 C 0.07 0.97 6.29 72.01 0.45 1.42 16 28 C 0.04 0.63 2.59 44.92 0.12 0.75 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 C -0.15 -1.47 8.92 71.98 0.64 -0.82 16 31 H 0.07 3.80 5.95 -2.38 -0.01 3.78 16 32 H 0.04 1.54 5.98 -2.39 -0.01 1.52 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.12 4.77 4.81 -2.91 -0.01 4.75 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 38 H 0.15 4.42 5.79 -2.91 -0.02 4.41 16 39 H 0.42 10.54 7.65 -92.70 -0.71 9.83 16 40 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 41 H 0.14 1.83 5.77 -2.39 -0.01 1.82 16 42 H 0.09 2.19 5.85 -2.39 -0.01 2.17 16 43 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 48 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.07 0.62 6.17 -2.39 -0.01 0.61 16 Total: -1.00 -63.47 398.80 0.27 -63.20 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.26 Total: 31.05 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 5.82 Total: -21.22 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -5.06 Total: -82.68 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.65 Total: -25.93 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -1.13 Total: -8.09 kcal Total: -63.47 0.27 -63.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953647.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.959 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds