Wall clock time and date at job start Tue Mar 31 2020 07:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47266 * 2 1 4 4 C 1.53006 * 109.46720 * 239.99861 * 2 1 3 5 5 C 1.53004 * 109.47139 * 120.00088 * 2 1 3 6 6 N 1.46903 * 109.46987 * 65.49149 * 5 2 1 7 7 C 1.46895 * 110.99867 * 159.40464 * 6 5 2 8 8 C 1.50707 * 109.47372 * 289.42309 * 7 6 5 9 9 H 1.07994 * 119.99772 * 3.96441 * 8 7 6 10 10 C 1.37875 * 120.00137 * 183.96618 * 8 7 6 11 11 N 1.31515 * 119.99931 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99963 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47009 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47224 * 119.99818 * 12 10 8 15 15 H 1.48501 * 109.46983 * 239.99659 * 12 10 8 16 16 C 1.38100 * 111.00039 * 283.35984 * 6 5 2 17 17 N 1.32873 * 120.81261 * 334.41588 * 16 6 5 18 18 C 1.32129 * 121.18986 * 179.97438 * 17 16 6 19 19 N 1.31520 * 122.63877 * 0.02562 * 18 17 16 20 20 C 1.33137 * 120.69059 * 359.97438 * 19 18 17 21 21 C 1.40804 * 120.81667 * 154.13657 * 16 6 5 22 22 C 1.41203 * 134.69305 * 0.71511 * 21 16 6 23 23 N 1.30299 * 108.51716 * 179.49780 * 22 21 16 24 24 N 1.36595 * 134.63198 * 179.97438 * 20 19 18 25 25 C 1.40055 * 125.89219 * 0.04914 * 24 20 19 26 26 C 1.38868 * 120.07443 * 324.72713 * 25 24 20 27 27 C 1.38114 * 119.93327 * 179.72288 * 26 25 24 28 28 C 1.38288 * 120.06384 * 0.57860 * 27 26 25 29 29 C 1.38280 * 120.14278 * 359.69811 * 28 27 26 30 30 C 1.38113 * 120.07281 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47210 * 292.33459 * 1 2 3 32 32 H 1.08996 * 109.47307 * 52.33432 * 1 2 3 33 33 H 1.09003 * 109.47504 * 172.34266 * 1 2 3 34 34 H 1.09006 * 109.47424 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47369 * 299.99819 * 3 2 1 36 36 H 1.08995 * 109.47512 * 60.00157 * 3 2 1 37 37 H 1.08991 * 109.47433 * 304.99195 * 4 2 1 38 38 H 1.09000 * 109.47034 * 64.99324 * 4 2 1 39 39 H 1.09002 * 109.46759 * 184.99435 * 4 2 1 40 40 H 1.08992 * 109.47224 * 305.49239 * 5 2 1 41 41 H 1.09004 * 109.46885 * 185.49002 * 5 2 1 42 42 H 1.09004 * 109.47243 * 49.42086 * 7 6 5 43 43 H 1.09004 * 109.47368 * 169.42287 * 7 6 5 44 44 H 0.97006 * 119.99814 * 180.02562 * 11 10 8 45 45 H 1.08000 * 118.67775 * 180.02562 * 18 17 16 46 46 H 1.07998 * 125.73772 * 359.25974 * 22 21 16 47 47 H 1.07997 * 120.03151 * 0.02562 * 26 25 24 48 48 H 1.07994 * 119.96858 * 180.29910 * 27 26 25 49 49 H 1.08003 * 119.92599 * 179.72526 * 28 27 26 50 50 H 1.08002 * 119.96586 * 180.02562 * 29 28 27 51 51 H 1.07996 * 120.03485 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2493 6 7 1.6615 -2.1393 1.1848 7 6 2.5105 -2.9513 2.0666 8 6 3.9026 -3.0264 1.4941 9 1 4.1506 -2.4695 0.6026 10 6 4.8596 -3.8060 2.1084 11 7 4.5577 -4.4837 3.1942 12 14 6.5852 -3.8984 1.3991 13 1 6.6669 -3.0492 0.1836 14 1 7.5616 -3.4147 2.4080 15 1 6.8988 -5.3052 1.0416 16 6 0.3255 -2.3093 1.4901 17 7 -0.3157 -1.4300 2.2525 18 6 -1.5940 -1.5850 2.5489 19 7 -2.3040 -2.6040 2.1159 20 6 -1.7515 -3.5387 1.3454 21 6 -0.3922 -3.4155 0.9963 22 6 -0.0697 -4.5288 0.1899 23 7 -1.1375 -5.2624 0.0511 24 7 -2.2028 -4.6833 0.7522 25 6 -3.5061 -5.1901 0.8310 26 6 -4.2391 -5.0462 2.0016 27 6 -5.5261 -5.5420 2.0742 28 6 -6.0805 -6.1919 0.9867 29 6 -5.3511 -6.3419 -0.1784 30 6 -4.0657 -5.8433 -0.2593 31 1 -0.3634 0.3905 0.9506 32 1 -0.3634 0.6279 -0.8134 33 1 -0.3634 -1.0185 -0.1369 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6054 -1.7198 -1.2951 38 1 1.7514 -0.1584 -2.1370 39 1 3.1262 -0.7995 -1.2057 40 1 1.5986 -0.2674 2.1365 41 1 3.1256 -0.6369 1.2997 42 1 2.5486 -2.4948 3.0557 43 1 2.0957 -3.9562 2.1459 44 1 5.2312 -5.0320 3.6267 45 1 -2.0750 -0.8454 3.1717 46 1 0.8982 -4.7353 -0.2425 47 1 -3.8050 -4.5427 2.8527 48 1 -6.0985 -5.4261 2.9827 49 1 -7.0856 -6.5827 1.0474 50 1 -5.7871 -6.8496 -1.0262 51 1 -3.4967 -5.9605 -1.1697 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095976183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:36 Heat of formation + Delta-G solvation = 160.254616 kcal Electronic energy + Delta-G solvation = -33679.429871 eV Core-core repulsion = 29581.140252 eV Total energy + Delta-G solvation = -4098.289618 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.191 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.06030 -39.83340 -38.78620 -37.69751 -35.29084 -33.68695 -32.87834 -31.98811 -31.11586 -30.05372 -29.07975 -27.40661 -26.87023 -26.76014 -25.56483 -24.09509 -23.58222 -23.10830 -22.30212 -21.46969 -20.20980 -18.64736 -18.49132 -17.14121 -16.73113 -16.66426 -16.23400 -15.90638 -15.35419 -15.11574 -14.73812 -14.46645 -14.30509 -14.20976 -13.93138 -13.77924 -13.57927 -13.52452 -13.30535 -12.87231 -12.64787 -12.45535 -12.05967 -12.01623 -11.82945 -11.63688 -11.51686 -11.40310 -11.24317 -11.19448 -10.98100 -10.92782 -10.79531 -10.55810 -10.37536 -10.31159 -10.11020 -9.98765 -9.67992 -9.49975 -9.14400 -8.98069 -8.92153 -8.61626 -8.15279 -7.68600 -6.19690 -4.23329 0.64338 1.10773 1.20749 1.66785 2.10762 2.63461 3.22849 3.31390 3.34666 3.57533 3.95062 4.09325 4.19876 4.34566 4.36972 4.74221 4.76989 4.88774 4.96377 5.00480 5.12983 5.17306 5.18336 5.22094 5.26282 5.34696 5.40909 5.55941 5.64182 5.83815 5.88803 5.89320 5.96997 6.06924 6.12385 6.19479 6.19847 6.23596 6.29741 6.32144 6.36858 6.38146 6.49174 6.52764 6.60779 6.67598 6.75965 6.85501 6.90953 6.98268 7.03385 7.29605 7.50670 7.61345 7.71622 7.88128 8.20131 8.43651 8.82917 9.41898 10.90788 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.010348 B = 0.003150 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.146663 B = 8887.458187 C =10334.110482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.136 4.136 4 C -0.128 4.128 5 C 0.065 3.935 6 N -0.472 5.472 7 C 0.206 3.794 8 C -0.514 4.514 9 H 0.070 0.930 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.900 3.100 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.471 3.529 17 N -0.585 5.585 18 C 0.360 3.640 19 N -0.563 5.563 20 C 0.353 3.647 21 C -0.276 4.276 22 C 0.140 3.860 23 N -0.261 5.261 24 N -0.342 5.342 25 C 0.169 3.831 26 C -0.115 4.115 27 C -0.101 4.101 28 C -0.129 4.129 29 C -0.105 4.105 30 C -0.117 4.117 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.009 0.991 43 H 0.038 0.962 44 H 0.264 0.736 45 H 0.197 0.803 46 H 0.208 0.792 47 H 0.135 0.865 48 H 0.130 0.870 49 H 0.125 0.875 50 H 0.129 0.871 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.045 3.204 -4.820 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.193 4.193 4 C -0.185 4.185 5 C -0.062 4.062 6 N -0.190 5.190 7 C 0.085 3.915 8 C -0.552 4.552 9 H 0.089 0.911 10 C -0.142 4.142 11 N -0.531 5.531 12 Si 0.728 3.272 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.225 3.775 17 N -0.309 5.309 18 C 0.068 3.932 19 N -0.288 5.288 20 C 0.108 3.892 21 C -0.291 4.291 22 C -0.057 4.057 23 N -0.072 5.072 24 N -0.125 5.125 25 C 0.078 3.922 26 C -0.136 4.136 27 C -0.119 4.119 28 C -0.148 4.148 29 C -0.123 4.123 30 C -0.137 4.137 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.213 0.787 46 H 0.225 0.775 47 H 0.152 0.848 48 H 0.148 0.852 49 H 0.143 0.857 50 H 0.147 0.853 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.848 2.413 -5.150 17.782 hybrid contribution 1.557 0.189 0.292 1.596 sum -15.291 2.602 -4.858 16.254 Atomic orbital electron populations 1.22134 0.95632 1.00436 1.01249 1.20547 0.94917 0.94804 0.96195 1.21789 1.01049 0.95444 1.01066 1.21711 1.01344 1.00348 0.95130 1.22254 1.01814 0.85458 0.96644 1.59509 0.97798 1.11250 1.50449 1.19932 0.91055 0.91601 0.88922 1.21061 0.93503 1.28663 1.11980 0.91145 1.24962 0.99215 0.95146 0.94859 1.69963 1.34612 1.29541 1.19017 0.86398 0.83738 0.77978 0.79096 1.19459 1.21018 1.20909 1.19957 0.92159 0.84395 0.81020 1.68716 1.11490 1.32862 1.17836 1.24621 0.86135 0.91013 0.91462 1.67530 1.40078 1.04274 1.16893 1.18993 0.89663 0.88273 0.92222 1.19726 0.95314 1.02767 1.11273 1.24074 0.97845 0.89682 0.94109 1.77162 0.93999 1.20157 1.15857 1.45471 1.07708 1.17179 1.42138 1.17444 0.80978 0.98924 0.94878 1.21104 0.95264 1.00906 0.96357 1.20984 0.94287 0.97648 0.99014 1.21200 1.00207 0.99926 0.93466 1.21002 0.93563 0.99485 0.98298 1.20990 0.95604 0.99551 0.97559 0.91694 0.94123 0.93782 0.92540 0.93179 0.92894 0.91890 0.94454 0.92506 0.91923 0.89000 0.97322 0.94375 0.92651 0.78676 0.77530 0.84751 0.85239 0.85669 0.85323 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 6.92 37.16 0.26 -1.80 16 2 C -0.06 -0.97 0.85 -154.51 -0.13 -1.10 16 3 C -0.14 -1.75 8.47 37.15 0.31 -1.44 16 4 C -0.13 -1.96 8.16 37.16 0.30 -1.66 16 5 C 0.07 1.16 3.88 -3.82 -0.01 1.15 16 6 N -0.47 -9.20 3.48 -174.16 -0.61 -9.81 16 7 C 0.21 4.88 4.65 -4.97 -0.02 4.85 16 8 C -0.51 -12.91 8.37 -34.44 -0.29 -13.19 16 9 H 0.07 1.74 7.49 -52.49 -0.39 1.34 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 11 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 12 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 16 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.47 8.74 3.23 -154.85 -0.50 8.24 16 17 N -0.59 -9.96 6.28 -13.62 -0.09 -10.05 16 18 C 0.36 5.40 12.23 -92.10 -1.13 4.28 16 19 N -0.56 -9.23 9.64 -13.91 -0.13 -9.37 16 20 C 0.35 6.30 7.52 -156.02 -1.17 5.13 16 21 C -0.28 -5.09 5.75 -106.80 -0.61 -5.71 16 22 C 0.14 2.45 12.05 -17.08 -0.21 2.24 16 23 N -0.26 -4.54 12.21 30.82 0.38 -4.17 16 24 N -0.34 -5.88 3.76 -9.93 -0.04 -5.92 16 25 C 0.17 2.54 6.40 -83.63 -0.54 2.00 16 26 C -0.12 -1.54 9.40 -39.39 -0.37 -1.91 16 27 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 28 C -0.13 -1.20 10.04 -39.55 -0.40 -1.60 16 29 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 30 C -0.12 -1.49 9.76 -39.39 -0.38 -1.88 16 31 H 0.06 0.97 6.81 -51.93 -0.35 0.62 16 32 H 0.04 0.56 8.13 -51.93 -0.42 0.13 16 33 H 0.04 0.75 5.73 -51.93 -0.30 0.45 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.05 7.64 -51.93 -0.40 0.66 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.13 6.91 -51.93 -0.36 0.78 16 41 H 0.09 1.76 6.86 -51.93 -0.36 1.41 16 42 H 0.01 0.23 8.07 -51.93 -0.42 -0.19 16 43 H 0.04 0.98 7.84 -51.93 -0.41 0.58 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.20 2.11 8.06 -52.49 -0.42 1.69 16 46 H 0.21 3.30 8.06 -52.49 -0.42 2.88 16 47 H 0.13 1.90 7.24 -52.49 -0.38 1.52 16 48 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 49 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 50 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 51 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 412.82 15.07 6.22 6.22 Total: -1.00 -28.94 412.82 -11.90 -40.85 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.57 Total: 4.95 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -5.78 Total: -3.78 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.25 Total: -63.47 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -28.94 -11.90 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095976183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.102 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds