Wall clock time and date at job start Tue Mar 31 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47038 * 2 1 4 4 C 1.36888 * 127.11289 * 84.81083 * 3 2 1 5 5 C 1.47834 * 126.51127 * 0.02562 * 4 3 2 6 6 C 1.39507 * 120.17204 * 47.97592 * 5 4 3 7 7 C 1.37935 * 119.91127 * 179.97438 * 6 5 4 8 8 C 1.38430 * 120.26386 * 0.02562 * 7 6 5 9 9 C 1.38189 * 120.34845 * 359.97438 * 8 7 6 10 10 C 1.38572 * 120.07546 * 359.97438 * 9 8 7 11 11 O 1.35810 * 120.12403 * 179.97438 * 10 9 8 12 12 C 1.42893 * 117.00432 * 359.97438 * 11 10 9 13 13 N 1.31486 * 106.96783 * 179.76210 * 4 3 2 14 14 N 1.28539 * 109.73227 * 0.23937 * 13 4 3 15 15 C 1.30573 * 110.07937 * 0.02562 * 14 13 4 16 16 S 1.76198 * 126.27896 * 180.02562 * 15 14 13 17 17 O 1.42103 * 104.27613 * 206.04545 * 16 15 14 18 18 O 1.42104 * 104.27687 * 333.90375 * 16 15 14 19 19 C 1.81398 * 104.45069 * 89.97473 * 16 15 14 20 20 C 1.53009 * 109.47057 * 180.02562 * 19 16 15 21 21 C 1.50695 * 109.46999 * 179.97438 * 20 19 16 22 22 H 1.08007 * 120.00318 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00215 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00486 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99616 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47449 * 89.99574 * 25 23 21 27 27 H 1.48499 * 109.46957 * 209.99655 * 25 23 21 28 28 H 1.48498 * 109.47180 * 329.99649 * 25 23 21 29 29 H 1.08998 * 109.47098 * 300.00432 * 1 2 3 30 30 H 1.09004 * 109.47057 * 60.00396 * 1 2 3 31 31 H 1.08995 * 109.47332 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47098 * 239.99567 * 2 1 3 33 33 H 1.09000 * 109.46626 * 119.99372 * 2 1 3 34 34 H 1.07993 * 120.04428 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.87221 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.82694 * 180.27053 * 8 7 6 37 37 H 1.07996 * 119.95805 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.46976 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47207 * 300.00106 * 12 11 10 40 40 H 1.09004 * 109.46943 * 60.00192 * 12 11 10 41 41 H 1.09002 * 109.47053 * 299.99417 * 19 16 15 42 42 H 1.08999 * 109.47464 * 60.00341 * 19 16 15 43 43 H 1.08993 * 109.46737 * 299.99824 * 20 19 16 44 44 H 1.08999 * 109.46807 * 59.99814 * 20 19 16 45 45 H 0.96999 * 120.00545 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2005 2.1929 1.0871 5 6 1.9412 1.8425 2.4997 6 6 2.4209 0.6419 3.0238 7 6 2.1762 0.3206 4.3427 8 6 1.4556 1.1847 5.1492 9 6 0.9753 2.3767 4.6413 10 6 1.2138 2.7143 3.3186 11 8 0.7417 3.8853 2.8183 12 6 0.0058 4.7229 3.7119 13 7 2.6555 3.3413 0.6366 14 7 2.7603 3.2944 -0.6436 15 6 2.3813 2.1243 -1.0819 16 16 2.3533 1.5999 -2.7638 17 8 1.3500 0.5943 -2.8007 18 8 2.2108 2.8045 -3.5041 19 6 3.9927 0.8739 -3.0390 20 6 4.0942 0.3758 -4.4822 21 6 5.4564 -0.2268 -4.7109 22 1 6.1778 -0.2516 -3.9075 23 6 5.7818 -0.7464 -5.9459 24 7 6.9707 -1.2718 -6.1457 25 14 4.5343 -0.7028 -7.3357 26 1 4.6907 0.5596 -8.1018 27 1 4.7582 -1.8606 -8.2382 28 1 3.1624 -0.7728 -6.7717 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.9831 -0.0350 2.3978 35 1 2.5483 -0.6088 4.7479 36 1 1.2719 0.9281 6.1820 37 1 0.4143 3.0464 5.2762 38 1 -0.3121 5.6236 3.1868 39 1 -0.8701 4.1855 4.0752 40 1 0.6386 4.9988 4.5554 41 1 4.7588 1.6285 -2.8608 42 1 4.1396 0.0383 -2.3547 43 1 3.3281 -0.3786 -4.6608 44 1 3.9475 1.2117 -5.1661 45 1 7.1998 -1.6371 -7.0146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095997306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:20 Heat of formation + Delta-G solvation = -0.650928 kcal Electronic energy + Delta-G solvation = -30929.577457 eV Core-core repulsion = 26655.795462 eV Total energy + Delta-G solvation = -4273.781995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 5.07 seconds Orbital eigenvalues (eV) -43.12232 -40.50389 -37.87985 -37.14937 -35.88003 -35.71642 -34.07772 -32.96475 -31.59337 -30.84098 -30.74942 -29.69801 -27.69522 -26.14272 -24.96072 -23.67318 -23.22834 -22.44886 -21.26502 -21.06301 -19.04165 -18.53775 -17.96642 -17.17466 -16.89904 -16.60324 -16.30793 -16.11430 -16.01408 -15.57878 -15.32672 -15.23653 -14.51334 -14.40952 -14.32576 -14.06184 -13.82782 -13.38387 -13.21693 -12.87101 -12.74015 -12.53611 -12.17014 -12.05094 -11.96289 -11.95258 -11.87087 -11.67447 -11.56392 -11.42179 -11.36601 -11.34047 -11.24232 -10.69821 -10.52668 -10.42921 -10.28797 -10.10976 -9.73931 -9.46489 -9.23424 -8.71034 -8.59038 -6.21009 -4.23708 0.07663 0.45219 0.90301 1.30658 2.13080 2.54967 2.81702 2.89037 3.22199 3.24473 3.31786 3.34362 3.75756 3.93189 4.09402 4.27786 4.31572 4.34968 4.38697 4.62455 4.67557 4.75837 4.77713 4.80152 4.90761 4.96302 5.04925 5.11377 5.13503 5.20145 5.29679 5.33222 5.39244 5.42710 5.54869 5.70256 5.80441 5.83711 5.92958 5.95196 6.10919 6.18297 6.44278 6.69269 6.82364 6.91603 7.46205 8.30083 8.36573 8.79462 9.37290 10.91037 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002551 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.464338 B =10974.342137 C =11453.318094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 N -0.420 5.420 4 C 0.253 3.747 5 C -0.060 4.060 6 C -0.058 4.058 7 C -0.155 4.155 8 C -0.060 4.060 9 C -0.210 4.210 10 C 0.173 3.827 11 O -0.296 6.296 12 C 0.025 3.975 13 N -0.265 5.265 14 N -0.191 5.191 15 C -0.350 4.350 16 S 2.492 3.508 17 O -0.931 6.931 18 O -0.907 6.907 19 C -0.546 4.546 20 C -0.007 4.007 21 C -0.522 4.522 22 H 0.080 0.920 23 C 0.074 3.926 24 N -0.893 5.893 25 Si 0.868 3.132 26 H -0.270 1.270 27 H -0.282 1.282 28 H -0.261 1.261 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.019 2.376 25.093 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.039 4.039 3 N -0.109 5.109 4 C -0.012 4.012 5 C -0.064 4.064 6 C -0.077 4.077 7 C -0.173 4.173 8 C -0.079 4.079 9 C -0.229 4.229 10 C 0.124 3.876 11 O -0.208 6.208 12 C -0.070 4.070 13 N -0.110 5.110 14 N -0.037 5.037 15 C -0.691 4.691 16 S 2.665 3.335 17 O -0.927 6.927 18 O -0.904 6.904 19 C -0.681 4.681 20 C -0.047 4.047 21 C -0.561 4.561 22 H 0.098 0.902 23 C -0.129 4.129 24 N -0.530 5.530 25 Si 0.694 3.306 26 H -0.195 1.195 27 H -0.207 1.207 28 H -0.185 1.185 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.162 3.896 24.248 28.862 hybrid contribution -0.485 -1.163 0.252 1.285 sum -15.647 2.733 24.499 29.198 Atomic orbital electron populations 1.22105 0.92566 1.04112 1.03539 1.22440 0.97660 0.77602 1.06209 1.46625 1.45843 1.13768 1.04696 1.22992 1.00512 0.88263 0.89443 1.16713 1.05702 0.96480 0.87480 1.21091 0.96713 0.93928 0.95985 1.20975 1.01886 1.01097 0.93380 1.21131 0.94353 0.92545 0.99834 1.21220 1.07168 1.00298 0.94223 1.18908 0.91677 0.85595 0.91383 1.86266 1.67240 1.28062 1.39202 1.23154 0.94991 0.94223 0.94621 1.74667 1.16791 1.16993 1.02517 1.74206 1.11763 1.14288 1.03402 1.38726 1.15444 0.98103 1.16862 1.06722 0.79919 0.75686 0.71134 1.93543 1.55778 1.59271 1.84120 1.93595 1.86266 1.45172 1.65331 1.30013 1.16189 1.12119 1.09809 1.19518 1.01146 0.97412 0.86596 1.20772 0.96746 1.39552 0.99012 0.90207 1.24960 0.95269 0.94264 0.98431 1.69866 1.19993 1.39111 1.24031 0.86941 0.82517 0.78536 0.82581 1.19489 1.20715 1.18524 0.92280 0.90326 0.89543 0.86478 0.87978 0.84826 0.84833 0.85071 0.84578 0.87834 0.92553 0.92263 0.84291 0.85157 0.94474 0.94752 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.15 37.16 0.38 -1.30 16 2 C 0.08 0.89 5.91 -4.04 -0.02 0.87 16 3 N -0.42 -6.09 2.80 -114.56 -0.32 -6.41 16 4 C 0.25 3.83 7.06 -154.23 -1.09 2.74 16 5 C -0.06 -0.71 5.69 -104.84 -0.60 -1.30 16 6 C -0.06 -0.50 8.69 -39.22 -0.34 -0.84 16 7 C -0.16 -1.01 10.03 -39.62 -0.40 -1.40 16 8 C -0.06 -0.36 10.03 -39.53 -0.40 -0.76 16 9 C -0.21 -1.55 9.03 -39.48 -0.36 -1.91 16 10 C 0.17 1.85 6.69 -38.80 -0.26 1.59 16 11 O -0.30 -3.48 9.73 -19.14 -0.19 -3.66 16 12 C 0.03 0.17 9.81 101.05 0.99 1.16 16 13 N -0.27 -4.85 11.98 32.50 0.39 -4.46 16 14 N -0.19 -3.70 12.18 30.49 0.37 -3.33 16 15 C -0.35 -6.02 7.69 -89.27 -0.69 -6.71 16 16 S 2.49 43.75 5.16 -107.50 -0.55 43.19 16 17 O -0.93 -16.15 15.03 -57.54 -0.86 -17.01 16 18 O -0.91 -18.77 17.94 -57.54 -1.03 -19.81 16 19 C -0.55 -9.72 5.92 37.16 0.22 -9.50 16 20 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 21 C -0.52 -14.02 9.66 -34.44 -0.33 -14.35 16 22 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 23 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 24 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 25 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.12 1.24 6.59 -51.93 -0.34 0.90 16 33 H 0.10 0.77 5.72 -51.93 -0.30 0.47 16 34 H 0.13 0.97 6.81 -52.49 -0.36 0.61 16 35 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 36 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.14 0.67 6.30 -52.49 -0.33 0.34 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 40 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 41 H 0.14 2.35 8.14 -51.92 -0.42 1.93 16 42 H 0.13 1.97 8.14 -51.92 -0.42 1.54 16 43 H 0.04 0.80 7.20 -51.93 -0.37 0.43 16 44 H 0.03 0.76 7.57 -51.93 -0.39 0.37 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -37.18 389.05 -9.16 -46.34 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.83 Total: -1.15 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -3.10 Total: -30.03 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 1.21 Total: -39.76 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -2.08 Total: -40.48 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 43.75 SS G_CDS: -0.55 Total: 43.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.18 -9.16 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095997306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.687 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.07 seconds