Wall clock time and date at job start Tue Mar 31 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47038 * 2 1 4 4 C 1.36888 * 127.11289 * 84.81083 * 3 2 1 5 5 C 1.47834 * 126.51127 * 0.02562 * 4 3 2 6 6 C 1.39507 * 120.17204 * 47.97592 * 5 4 3 7 7 C 1.37935 * 119.91127 * 179.97438 * 6 5 4 8 8 C 1.38430 * 120.26386 * 0.02562 * 7 6 5 9 9 C 1.38189 * 120.34845 * 359.97438 * 8 7 6 10 10 C 1.38572 * 120.07546 * 359.97438 * 9 8 7 11 11 O 1.35810 * 120.12403 * 179.97438 * 10 9 8 12 12 C 1.42893 * 117.00432 * 359.97438 * 11 10 9 13 13 N 1.31486 * 106.96783 * 179.76210 * 4 3 2 14 14 N 1.28539 * 109.73227 * 0.23937 * 13 4 3 15 15 C 1.30573 * 110.07937 * 0.02562 * 14 13 4 16 16 S 1.76198 * 126.27896 * 180.02562 * 15 14 13 17 17 O 1.42103 * 104.27613 * 206.04545 * 16 15 14 18 18 O 1.42104 * 104.27687 * 333.90375 * 16 15 14 19 19 C 1.81398 * 104.45069 * 89.97473 * 16 15 14 20 20 C 1.53009 * 109.47057 * 180.02562 * 19 16 15 21 21 C 1.50695 * 109.46999 * 179.97438 * 20 19 16 22 22 H 1.08007 * 120.00318 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00215 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00486 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99616 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47449 * 89.99574 * 25 23 21 27 27 H 1.48499 * 109.46957 * 209.99655 * 25 23 21 28 28 H 1.48498 * 109.47180 * 329.99649 * 25 23 21 29 29 H 1.08998 * 109.47098 * 300.00432 * 1 2 3 30 30 H 1.09004 * 109.47057 * 60.00396 * 1 2 3 31 31 H 1.08995 * 109.47332 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47098 * 239.99567 * 2 1 3 33 33 H 1.09000 * 109.46626 * 119.99372 * 2 1 3 34 34 H 1.07993 * 120.04428 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.87221 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.82694 * 180.27053 * 8 7 6 37 37 H 1.07996 * 119.95805 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.46976 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47207 * 300.00106 * 12 11 10 40 40 H 1.09004 * 109.46943 * 60.00192 * 12 11 10 41 41 H 1.09002 * 109.47053 * 299.99417 * 19 16 15 42 42 H 1.08999 * 109.47464 * 60.00341 * 19 16 15 43 43 H 1.08993 * 109.46737 * 299.99824 * 20 19 16 44 44 H 1.08999 * 109.46807 * 59.99814 * 20 19 16 45 45 H 0.96999 * 120.00545 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2005 2.1929 1.0871 5 6 1.9412 1.8425 2.4997 6 6 2.4209 0.6419 3.0238 7 6 2.1762 0.3206 4.3427 8 6 1.4556 1.1847 5.1492 9 6 0.9753 2.3767 4.6413 10 6 1.2138 2.7143 3.3186 11 8 0.7417 3.8853 2.8183 12 6 0.0058 4.7229 3.7119 13 7 2.6555 3.3413 0.6366 14 7 2.7603 3.2944 -0.6436 15 6 2.3813 2.1243 -1.0819 16 16 2.3533 1.5999 -2.7638 17 8 1.3500 0.5943 -2.8007 18 8 2.2108 2.8045 -3.5041 19 6 3.9927 0.8739 -3.0390 20 6 4.0942 0.3758 -4.4822 21 6 5.4564 -0.2268 -4.7109 22 1 6.1778 -0.2516 -3.9075 23 6 5.7818 -0.7464 -5.9459 24 7 6.9707 -1.2718 -6.1457 25 14 4.5343 -0.7028 -7.3357 26 1 4.6907 0.5596 -8.1018 27 1 4.7582 -1.8606 -8.2382 28 1 3.1624 -0.7728 -6.7717 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.9831 -0.0350 2.3978 35 1 2.5483 -0.6088 4.7479 36 1 1.2719 0.9281 6.1820 37 1 0.4143 3.0464 5.2762 38 1 -0.3121 5.6236 3.1868 39 1 -0.8701 4.1855 4.0752 40 1 0.6386 4.9988 4.5554 41 1 4.7588 1.6285 -2.8608 42 1 4.1396 0.0383 -2.3547 43 1 3.3281 -0.3786 -4.6608 44 1 3.9475 1.2117 -5.1661 45 1 7.1998 -1.6371 -7.0146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095997306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:15 Heat of formation + Delta-G solvation = -26.637645 kcal Electronic energy + Delta-G solvation = -30930.704325 eV Core-core repulsion = 26655.795462 eV Total energy + Delta-G solvation = -4274.908864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.124 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -44.31118 -41.14308 -38.63193 -38.44874 -37.33931 -36.83923 -35.94736 -33.80781 -33.53256 -31.81627 -31.35315 -30.63813 -28.23605 -27.99809 -25.92278 -24.60679 -24.33017 -23.19819 -22.83608 -22.04865 -20.37661 -19.53620 -19.16703 -18.71614 -17.91986 -17.62979 -17.46433 -17.06869 -16.86465 -16.70908 -16.63870 -16.34804 -15.87381 -15.42107 -15.27586 -15.02832 -14.80064 -14.65560 -14.30063 -13.82938 -13.81003 -13.70062 -13.45867 -13.34536 -13.14702 -13.10250 -13.06940 -13.05452 -12.75906 -12.62590 -12.38628 -12.26288 -12.09690 -11.98897 -11.95569 -11.86540 -11.71669 -11.53891 -11.40139 -11.10789 -10.81697 -9.96560 -9.27010 -8.33440 -6.40356 -1.34037 -0.35652 0.23759 0.35483 1.06922 1.36248 1.37558 1.39504 1.48361 1.52665 2.24107 2.33089 2.52273 2.61538 2.75335 2.98356 3.00976 3.39672 3.64252 3.76331 3.77625 3.86079 3.86667 4.00989 4.12736 4.18712 4.22718 4.32371 4.34213 4.38933 4.41761 4.46125 4.50965 4.66158 4.67546 4.78031 4.84550 4.99833 5.05383 5.11620 5.15743 5.25489 5.40970 5.46355 5.47033 5.69848 6.17656 6.32132 6.66038 7.12351 7.23938 8.81846 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002551 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.464338 B =10974.342137 C =11453.318094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.066 3.934 3 N -0.415 5.415 4 C 0.269 3.731 5 C -0.099 4.099 6 C -0.061 4.061 7 C -0.148 4.148 8 C -0.048 4.048 9 C -0.209 4.209 10 C 0.153 3.847 11 O -0.336 6.336 12 C 0.018 3.982 13 N -0.306 5.306 14 N -0.227 5.227 15 C -0.361 4.361 16 S 2.522 3.478 17 O -0.927 6.927 18 O -0.942 6.942 19 C -0.547 4.547 20 C -0.017 4.017 21 C -0.527 4.527 22 H 0.051 0.949 23 C 0.016 3.984 24 N -0.940 5.940 25 Si 0.923 3.077 26 H -0.265 1.265 27 H -0.275 1.275 28 H -0.239 1.239 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.091 0.724 27.913 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.053 4.053 3 N -0.104 5.104 4 C 0.003 3.997 5 C -0.103 4.103 6 C -0.080 4.080 7 C -0.166 4.166 8 C -0.066 4.066 9 C -0.227 4.227 10 C 0.105 3.895 11 O -0.248 6.248 12 C -0.076 4.076 13 N -0.150 5.150 14 N -0.072 5.072 15 C -0.705 4.705 16 S 2.697 3.303 17 O -0.923 6.923 18 O -0.938 6.938 19 C -0.681 4.681 20 C -0.056 4.056 21 C -0.566 4.566 22 H 0.069 0.931 23 C -0.183 4.183 24 N -0.579 5.579 25 Si 0.745 3.255 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.162 1.162 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.178 0.822 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.161 0.839 42 H 0.175 0.825 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.252 2.232 27.064 32.173 hybrid contribution 0.147 -0.674 -0.353 0.775 sum -17.105 1.558 26.711 31.756 Atomic orbital electron populations 1.22124 0.91994 1.05667 1.02334 1.22917 0.98256 0.75954 1.08181 1.46867 1.45124 1.14745 1.03685 1.23595 0.97922 0.87197 0.90938 1.17005 1.08650 0.98655 0.85948 1.21292 0.96552 0.92903 0.97275 1.21374 1.00871 1.02119 0.92272 1.21628 0.92326 0.91316 1.01350 1.21537 1.06942 1.01266 0.92953 1.19210 0.92310 0.85342 0.92623 1.86207 1.68103 1.29064 1.41464 1.23385 0.95644 0.93999 0.94594 1.74565 1.18970 1.19301 1.02183 1.74110 1.13071 1.15654 1.04398 1.38307 1.16672 0.98309 1.17174 1.05640 0.79196 0.74764 0.70722 1.93535 1.55479 1.59036 1.84281 1.93548 1.86607 1.46768 1.66904 1.29932 1.17051 1.13343 1.07820 1.19490 0.98929 0.97707 0.89504 1.21074 0.98267 1.39064 0.98218 0.93118 1.25845 0.97121 0.94089 1.01264 1.69999 1.22162 1.40829 1.24920 0.86056 0.81080 0.78827 0.79519 1.18973 1.20064 1.16211 0.92047 0.92953 0.86546 0.86204 0.84372 0.83828 0.81785 0.81466 0.82243 0.87766 0.90594 0.90765 0.83915 0.82488 0.93066 0.94533 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.15 71.98 0.73 -2.31 16 2 C 0.07 1.32 5.91 86.38 0.51 1.83 16 3 N -0.42 -11.91 2.80 -516.37 -1.45 -13.35 16 4 C 0.27 8.20 7.06 136.37 0.96 9.16 16 5 C -0.10 -2.23 5.69 -20.01 -0.11 -2.34 16 6 C -0.06 -0.89 8.69 22.50 0.20 -0.70 16 7 C -0.15 -1.29 10.03 22.24 0.22 -1.07 16 8 C -0.05 -0.36 10.03 22.30 0.22 -0.14 16 9 C -0.21 -2.44 9.03 22.34 0.20 -2.23 16 10 C 0.15 3.11 6.69 22.77 0.15 3.26 16 11 O -0.34 -7.93 9.73 -91.41 -0.89 -8.82 16 12 C 0.02 0.22 9.81 113.37 1.11 1.33 16 13 N -0.31 -11.64 11.98 -51.10 -0.61 -12.25 16 14 N -0.23 -9.13 12.18 -57.45 -0.70 -9.83 16 15 C -0.36 -12.62 7.69 179.88 1.38 -11.24 16 16 S 2.52 88.32 5.16 -56.49 -0.29 88.03 16 17 O -0.93 -31.26 15.03 -127.65 -1.92 -33.18 16 18 O -0.94 -39.62 17.94 -127.65 -2.29 -41.91 16 19 C -0.55 -19.29 5.92 71.99 0.43 -18.87 16 20 C -0.02 -0.75 4.05 29.85 0.12 -0.63 16 21 C -0.53 -28.67 9.66 25.60 0.25 -28.42 16 22 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 23 C 0.02 0.88 5.47 84.66 0.46 1.34 16 24 N -0.94 -56.61 13.96 21.45 0.30 -56.31 16 25 Si 0.92 42.07 27.47 68.60 1.88 43.96 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.25 7.53 -2.38 -0.02 1.23 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 2.30 6.59 -2.39 -0.02 2.29 16 33 H 0.14 1.69 5.72 -2.39 -0.01 1.67 16 34 H 0.14 1.68 6.81 -2.91 -0.02 1.66 16 35 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 36 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.16 1.00 6.30 -2.91 -0.02 0.98 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 0.60 7.66 -2.39 -0.02 0.59 16 40 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 41 H 0.14 4.92 8.14 -2.39 -0.02 4.90 16 42 H 0.16 4.59 8.14 -2.39 -0.02 4.57 16 43 H 0.05 2.12 7.20 -2.39 -0.02 2.10 16 44 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 45 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -84.71 389.05 1.84 -82.87 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.97 Total: 11.82 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 6.84 Total: -51.01 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -2.46 Total: -91.75 kcal Atomic # 8 Polarization: -78.81 SS G_CDS: -5.10 Total: -83.91 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.96 kcal Atomic # 16 Polarization: 88.32 SS G_CDS: -0.29 Total: 88.03 kcal Total: -84.71 1.84 -82.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095997306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.230 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds