Wall clock time and date at job start Tue Mar 31 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46715 * 2 1 4 4 C 1.52996 * 109.47518 * 240.00171 * 2 1 3 5 5 C 1.50694 * 109.47377 * 119.99648 * 2 1 3 6 6 C 1.38269 * 120.14160 * 0.02562 * 5 2 1 7 7 C 1.37899 * 119.82489 * 180.21275 * 6 5 2 8 8 C 1.38984 * 120.58622 * 0.02562 * 7 6 5 9 9 C 1.37669 * 119.51851 * 359.61804 * 8 7 6 10 10 C 1.37956 * 120.14150 * 180.02562 * 5 2 1 11 11 C 1.50814 * 122.34866 * 180.62877 * 9 8 7 12 12 N 1.46683 * 109.68175 * 348.91923 * 11 9 8 13 13 S 1.65601 * 121.33828 * 224.23630 * 12 11 9 14 14 O 1.42100 * 104.27822 * 333.92975 * 13 12 11 15 15 O 1.42103 * 104.27772 * 206.07639 * 13 12 11 16 16 C 1.81399 * 104.44938 * 90.00291 * 13 12 11 17 17 C 1.52999 * 109.46810 * 179.97438 * 16 13 12 18 18 C 1.53006 * 109.46997 * 180.02562 * 17 16 13 19 19 C 1.50699 * 109.47240 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31522 * 120.00243 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47195 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46997 * 120.00167 * 23 21 19 26 26 H 1.48500 * 109.47074 * 240.00161 * 23 21 19 27 27 C 1.47232 * 117.32182 * 44.51239 * 12 11 9 28 28 C 1.50598 * 117.60859 * 179.39397 * 8 7 6 29 29 H 1.08996 * 109.47581 * 299.99879 * 1 2 3 30 30 H 1.09003 * 109.47411 * 60.00534 * 1 2 3 31 31 H 1.09000 * 109.46798 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46676 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47130 * 299.99632 * 3 2 1 34 34 H 1.08996 * 109.46997 * 59.99763 * 3 2 1 35 35 H 1.08999 * 109.46902 * 300.00213 * 4 2 1 36 36 H 1.09003 * 109.47355 * 59.99261 * 4 2 1 37 37 H 1.08998 * 109.47263 * 179.97438 * 4 2 1 38 38 H 1.08000 * 120.08282 * 0.23556 * 6 5 2 39 39 H 1.08002 * 119.70917 * 179.97438 * 7 6 5 40 40 H 1.08002 * 119.74742 * 359.94672 * 10 5 2 41 41 H 1.09008 * 109.43370 * 228.85467 * 11 9 8 42 42 H 1.08995 * 109.43343 * 108.98912 * 11 9 8 43 43 H 1.09000 * 109.47070 * 299.99993 * 16 13 12 44 44 H 1.09001 * 109.46593 * 59.99990 * 16 13 12 45 45 H 1.09000 * 109.47486 * 299.99969 * 17 16 13 46 46 H 1.09001 * 109.47362 * 60.00691 * 17 16 13 47 47 H 1.09000 * 109.46866 * 300.00212 * 18 17 16 48 48 H 1.08996 * 109.47261 * 59.99820 * 18 17 16 49 49 H 0.96992 * 120.00032 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.77821 * 55.02938 * 27 12 11 51 51 H 1.09003 * 109.78170 * 175.83073 * 27 12 11 52 52 H 1.09002 * 109.20151 * 280.74381 * 28 8 7 53 53 H 1.09003 * 109.20634 * 40.03257 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2304 6 6 1.1365 -1.2373 2.1423 7 6 1.6034 -1.8822 3.2683 8 6 2.9686 -2.0075 3.4965 9 6 3.8593 -1.4887 2.5840 10 6 3.3881 -0.8375 1.4519 11 6 5.3529 -1.6006 2.7607 12 7 5.6558 -2.0755 4.1151 13 16 6.8567 -1.3840 5.0217 14 8 7.7568 -0.8486 4.0613 15 8 7.2627 -2.4155 5.9109 16 6 6.0275 -0.0505 5.9298 17 6 7.0444 0.6727 6.8150 18 6 6.3449 1.7971 7.5815 19 6 7.3466 2.5099 8.4530 20 1 8.3791 2.1930 8.4592 21 6 6.9453 3.5673 9.2415 22 7 5.6881 3.9536 9.2335 23 14 8.1868 4.4505 10.3223 24 1 9.5237 3.8272 10.1513 25 1 8.2545 5.8814 9.9308 26 1 7.7692 4.3453 11.7435 27 6 4.8534 -3.1958 4.6337 28 6 3.4042 -2.7119 4.7543 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6767 -1.7488 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 0.0739 -1.1444 1.9729 39 1 0.9020 -2.2927 3.9795 40 1 4.0883 -0.4268 0.7395 41 1 5.8104 -0.6230 2.6083 42 1 5.7526 -2.3051 2.0314 43 1 5.5938 0.6560 5.2221 44 1 5.2383 -0.4714 6.5529 45 1 7.4777 -0.0340 7.5228 46 1 7.8339 1.0936 6.1923 47 1 5.9113 2.5040 6.8741 48 1 5.5556 1.3760 8.2042 49 1 5.4057 4.6972 9.7885 50 1 4.9070 -4.0381 3.9440 51 1 5.2276 -3.4954 5.6126 52 1 3.3224 -2.0249 5.5966 53 1 2.7545 -3.5698 4.9282 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096004712.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:17 Heat of formation + Delta-G solvation = -95.892050 kcal Electronic energy + Delta-G solvation = -31317.631558 eV Core-core repulsion = 27279.093036 eV Total energy + Delta-G solvation = -4038.538522 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.181 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.22216 -38.82789 -38.31291 -37.12448 -36.50793 -36.32465 -34.18731 -33.57607 -31.86085 -29.94295 -29.68769 -28.30979 -28.07900 -26.01008 -25.58413 -24.73975 -23.14176 -22.46053 -21.59700 -20.19088 -19.35806 -18.76502 -18.54532 -17.59943 -17.29853 -17.09464 -16.52489 -16.36244 -16.12777 -15.82834 -15.53833 -15.29044 -15.02999 -14.94085 -14.53611 -14.47037 -14.29240 -14.10628 -13.79419 -13.73290 -13.60658 -13.47890 -13.24631 -13.21560 -13.08437 -13.02719 -12.83666 -12.79156 -12.67465 -12.63070 -12.53618 -12.37216 -12.27059 -12.14802 -11.97852 -11.79017 -11.71444 -11.48846 -11.37086 -11.33450 -11.07102 -10.59929 -10.11486 -9.56402 -9.28757 -8.24287 -6.35621 -0.83396 0.45736 0.49757 1.38636 1.39134 1.52650 1.58341 2.38483 2.73898 2.80496 3.06084 3.09220 3.52311 3.64744 3.73120 3.83751 3.86377 3.92389 4.02764 4.10172 4.14382 4.21331 4.34633 4.38832 4.44135 4.46127 4.57400 4.61176 4.63076 4.69302 4.79103 4.80381 4.83785 4.90032 4.92208 4.93669 5.02042 5.04069 5.05017 5.06470 5.17019 5.18945 5.22928 5.32537 5.38244 5.43019 5.45688 5.47611 5.59582 5.64503 5.77237 5.78005 5.78864 6.15336 6.17394 6.80085 7.33923 8.87494 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.002475 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.135256 B =11312.267554 C =12793.088811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.078 4.078 6 C -0.126 4.126 7 C -0.124 4.124 8 C -0.083 4.083 9 C -0.102 4.102 10 C -0.120 4.120 11 C 0.162 3.838 12 N -0.998 5.998 13 S 2.629 3.371 14 O -0.983 6.983 15 O -0.979 6.979 16 C -0.609 4.609 17 C -0.105 4.105 18 C 0.032 3.968 19 C -0.551 4.551 20 H 0.061 0.939 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.276 1.276 27 C 0.114 3.886 28 C -0.101 4.101 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.000 1.000 48 H 0.002 0.998 49 H 0.265 0.735 50 H 0.095 0.905 51 H 0.101 0.899 52 H 0.079 0.921 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 -14.631 -20.725 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.193 4.193 5 C -0.078 4.078 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.083 4.083 9 C -0.104 4.104 10 C -0.138 4.138 11 C 0.037 3.963 12 N -0.836 5.836 13 S 2.725 3.275 14 O -0.974 6.974 15 O -0.969 6.969 16 C -0.740 4.740 17 C -0.144 4.144 18 C -0.006 4.006 19 C -0.589 4.589 20 H 0.079 0.921 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.788 3.212 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.010 4.010 28 C -0.139 4.139 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.154 0.846 44 H 0.160 0.840 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.018 0.982 48 H 0.021 0.979 49 H 0.074 0.926 50 H 0.113 0.887 51 H 0.119 0.881 52 H 0.097 0.903 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.861 -14.818 -20.655 28.051 hybrid contribution -0.185 1.213 0.928 1.539 sum -12.046 -13.605 -19.727 26.821 Atomic orbital electron populations 1.21943 0.93410 1.02257 1.02287 1.19529 0.96311 0.94772 0.92319 1.21912 1.01149 0.94717 1.01980 1.21865 1.01146 1.00111 0.96135 1.19926 0.93046 0.98242 0.96565 1.21337 1.00545 0.98301 0.94235 1.21408 0.94826 0.99878 0.98122 1.19623 0.93255 0.99171 0.96271 1.19847 0.94980 0.99851 0.95722 1.21005 0.95830 0.99719 0.97248 1.20295 0.92014 1.01184 0.82772 1.57677 1.54504 1.45829 1.25580 1.04391 0.74176 0.75134 0.73796 1.93525 1.62047 1.81575 1.60224 1.93524 1.80778 1.55112 1.67528 1.30571 1.12361 1.17907 1.13122 1.21313 0.96647 0.98692 0.97753 1.18947 0.95140 0.92436 0.94069 1.21757 0.96183 1.15811 1.25160 0.92095 1.25953 0.97323 0.97902 0.98434 1.70084 1.17373 1.28409 1.41152 0.85415 0.79193 0.78254 0.78317 1.18724 1.20208 1.20129 1.21774 0.89713 0.88150 1.01395 1.21015 0.96707 1.01212 0.94984 0.92592 0.91500 0.91884 0.92645 0.91220 0.93485 0.92666 0.91376 0.92545 0.84350 0.84559 0.85193 0.88724 0.88567 0.84553 0.83980 0.91352 0.91604 0.98189 0.97940 0.92622 0.88678 0.88055 0.90271 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.14 71.98 0.51 -1.08 16 2 C -0.03 -0.40 0.85 -52.93 -0.05 -0.44 16 3 C -0.14 -2.01 8.29 71.99 0.60 -1.41 16 4 C -0.14 -1.58 8.29 71.98 0.60 -0.98 16 5 C -0.08 -1.33 4.75 -19.93 -0.09 -1.42 16 6 C -0.13 -2.10 8.97 22.20 0.20 -1.91 16 7 C -0.12 -2.13 9.59 22.37 0.21 -1.91 16 8 C -0.08 -1.56 5.76 -19.85 -0.11 -1.68 16 9 C -0.10 -2.03 5.82 -19.82 -0.12 -2.15 16 10 C -0.12 -2.20 8.31 22.35 0.19 -2.02 16 11 C 0.16 3.30 6.02 85.63 0.52 3.82 16 12 N -1.00 -22.45 3.18 -516.97 -1.64 -24.09 16 13 S 2.63 77.89 5.45 -56.49 -0.31 77.59 16 14 O -0.98 -34.25 16.94 -127.65 -2.16 -36.41 16 15 O -0.98 -33.39 16.68 -127.65 -2.13 -35.52 16 16 C -0.61 -19.28 6.18 71.98 0.44 -18.84 16 17 C -0.10 -4.36 5.16 30.60 0.16 -4.20 16 18 C 0.03 1.70 4.97 29.85 0.15 1.85 16 19 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.00 0.12 5.46 84.65 0.46 0.58 16 22 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 23 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 C 0.11 2.04 6.45 86.33 0.56 2.59 16 28 C -0.10 -1.61 5.88 29.91 0.18 -1.44 16 29 H 0.06 0.67 7.53 -2.39 -0.02 0.65 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.65 7.52 -2.39 -0.02 0.63 16 32 H 0.05 0.82 7.39 -2.39 -0.02 0.80 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.68 7.39 -2.39 -0.02 0.66 16 38 H 0.14 1.82 5.93 -2.91 -0.02 1.80 16 39 H 0.14 1.80 8.05 -2.91 -0.02 1.77 16 40 H 0.13 2.07 7.09 -2.91 -0.02 2.05 16 41 H 0.09 1.97 7.40 -2.38 -0.02 1.95 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 45 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 48 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 50 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.10 1.83 6.98 -2.39 -0.02 1.81 16 52 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 53 H 0.11 1.21 8.11 -2.39 -0.02 1.19 16 Total: -1.00 -73.74 426.80 1.57 -72.17 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.87 Total: 17.83 kcal Atomic # 6 Polarization: -66.73 SS G_CDS: 4.63 Total: -62.10 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.36 Total: -80.06 kcal Atomic # 8 Polarization: -67.64 SS G_CDS: -4.29 Total: -71.93 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 77.89 SS G_CDS: -0.31 Total: 77.59 kcal Total: -73.74 1.57 -72.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096004712.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.720 kcal (2) G-P(sol) polarization free energy of solvation -73.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds