Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35953 * 116.99798 * 2 1 4 4 C 1.38664 * 120.06276 * 0.02562 * 3 2 1 5 5 C 1.38182 * 119.96623 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.09765 * 359.97438 * 5 4 3 7 7 S 1.76208 * 119.93546 * 180.02562 * 6 5 4 8 8 O 1.42108 * 106.39981 * 230.98066 * 7 6 5 9 9 O 1.42090 * 106.40405 * 3.90023 * 7 6 5 10 10 N 1.65599 * 107.21549 * 117.44439 * 7 6 5 11 11 C 1.36847 * 119.99967 * 111.77259 * 10 7 6 12 12 H 1.07999 * 120.00482 * 321.15437 * 11 10 7 13 13 C 1.38796 * 120.00411 * 141.15422 * 11 10 7 14 14 N 1.31588 * 120.00318 * 161.04224 * 13 11 10 15 15 Si 1.86803 * 119.99657 * 341.04568 * 13 11 10 16 16 H 1.48499 * 109.47217 * 92.21138 * 15 13 11 17 17 H 1.48495 * 109.47256 * 212.20771 * 15 13 11 18 18 H 1.48500 * 109.47354 * 332.21302 * 15 13 11 19 19 C 1.39291 * 119.99926 * 291.76756 * 10 7 6 20 20 C 1.39083 * 120.09002 * 332.37853 * 19 10 7 21 21 C 1.38056 * 119.90742 * 179.78995 * 20 19 10 22 22 C 1.38331 * 120.08781 * 0.46503 * 21 20 19 23 23 C 1.38332 * 120.18464 * 359.79423 * 22 21 20 24 24 C 1.38053 * 120.08656 * 359.96995 * 23 22 21 25 25 C 1.38260 * 120.12861 * 359.97438 * 6 5 4 26 26 C 1.50701 * 119.98661 * 180.02562 * 25 6 5 27 27 C 1.38330 * 120.02424 * 359.79296 * 25 6 5 28 28 F 1.35102 * 120.04380 * 180.23190 * 27 25 6 29 29 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47394 * 59.99918 * 1 2 3 31 31 H 1.09007 * 109.46790 * 299.99441 * 1 2 3 32 32 H 1.07994 * 120.01758 * 359.95263 * 4 3 2 33 33 H 1.08002 * 119.94943 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99678 * 180.02562 * 14 13 11 35 35 H 1.07993 * 120.04281 * 0.02600 * 20 19 10 36 36 H 1.07998 * 119.95211 * 180.25929 * 21 20 19 37 37 H 1.08003 * 119.90807 * 179.76502 * 22 21 20 38 38 H 1.07991 * 119.95508 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.04476 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.46944 * 84.47128 * 26 25 6 41 41 H 1.08999 * 109.47290 * 204.47279 * 26 25 6 42 42 H 1.09008 * 109.47224 * 324.47340 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9216 3.6053 0.0011 6 6 3.3022 3.6777 0.0016 7 16 4.1003 5.2487 0.0030 8 8 5.0476 5.2184 -1.0559 9 8 3.0696 6.2223 0.0960 10 7 4.9718 5.3545 1.4071 11 6 6.3396 5.3577 1.3649 12 1 6.8598 4.7212 0.6645 13 6 7.0585 6.1791 2.2223 14 7 8.3293 5.9324 2.4582 15 14 6.2218 7.6347 3.0412 16 1 5.6880 7.2193 4.3632 17 1 7.2060 8.7310 3.2272 18 1 5.1064 8.1109 2.1844 19 6 4.3125 5.4402 2.6312 20 6 3.0407 5.9989 2.7005 21 6 2.3890 6.0780 3.9150 22 6 3.0031 5.6114 5.0633 23 6 4.2702 5.0600 4.9995 24 6 4.9267 4.9727 3.7882 25 6 4.0579 2.5199 0.0021 26 6 5.5626 2.6026 0.0033 27 6 3.4332 1.2857 0.0065 28 9 4.1713 0.1541 0.0117 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 0.2137 2.3201 0.0002 33 1 1.3341 4.5115 0.0011 34 1 8.8316 6.5062 3.0577 35 1 2.5622 6.3667 1.8050 36 1 1.3997 6.5079 3.9691 37 1 2.4922 5.6783 6.0125 38 1 4.7463 4.6973 5.8983 39 1 5.9161 4.5425 3.7392 40 1 5.9192 2.7213 1.0265 41 1 5.9771 1.6886 -0.4221 42 1 5.8800 3.4577 -0.5936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096008324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -72.498022 kcal Electronic energy + Delta-G solvation = -32353.338839 eV Core-core repulsion = 27920.688264 eV Total energy + Delta-G solvation = -4432.650575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -48.70924 -40.18041 -39.03337 -37.84195 -36.68549 -35.51096 -35.11886 -32.46899 -32.25220 -30.54309 -30.18320 -28.79123 -27.85004 -26.63422 -24.89601 -23.05109 -22.01479 -21.72520 -21.44411 -18.96571 -18.28605 -18.12752 -17.66409 -17.27161 -16.73218 -16.32983 -15.91481 -15.57859 -15.36276 -15.16606 -14.88774 -14.69368 -14.13245 -13.92017 -13.72591 -13.38542 -13.23869 -13.09910 -12.90397 -12.84428 -12.67207 -12.59379 -12.22173 -12.09129 -12.03559 -11.77488 -11.44991 -11.28844 -11.27199 -11.21131 -10.90671 -10.69189 -10.68672 -10.37199 -10.12020 -9.86853 -9.81666 -8.81815 -8.79161 -8.50573 -8.15741 -7.40976 -6.67629 -4.31118 0.72336 1.05426 1.09488 2.06129 2.11337 2.84598 3.18499 3.21932 3.28319 3.38702 3.70873 4.12313 4.16802 4.28153 4.43340 4.50701 4.69506 4.79612 4.85442 4.92851 4.99309 5.16122 5.22086 5.28591 5.48175 5.53056 5.60437 5.77467 5.83201 5.88795 5.98297 6.06412 6.12430 6.19000 6.24095 6.41979 6.45499 6.65884 6.67219 6.87401 7.05485 7.09801 7.24583 7.30746 7.47040 7.70191 8.13583 8.72473 8.82569 10.36156 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.004707 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.145538 B = 5946.695493 C = 6562.786066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.145 3.855 4 C -0.216 4.216 5 C 0.013 3.987 6 C -0.676 4.676 7 S 2.631 3.369 8 O -0.947 6.947 9 O -0.986 6.986 10 N -0.792 5.792 11 C -0.312 4.312 12 H 0.129 0.871 13 C 0.087 3.913 14 N -0.834 5.834 15 Si 0.852 3.148 16 H -0.246 1.246 17 H -0.286 1.286 18 H -0.255 1.255 19 C 0.177 3.823 20 C -0.220 4.220 21 C -0.093 4.093 22 C -0.176 4.176 23 C -0.098 4.098 24 C -0.138 4.138 25 C 0.040 3.960 26 C -0.173 4.173 27 C 0.039 3.961 28 F -0.129 7.129 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.282 0.718 35 H 0.165 0.835 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 -7.456 0.098 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.098 3.902 4 C -0.236 4.236 5 C -0.006 4.006 6 C -0.760 4.760 7 S 2.735 3.265 8 O -0.937 6.937 9 O -0.975 6.975 10 N -0.606 5.606 11 C -0.448 4.448 12 H 0.146 0.854 13 C -0.127 4.127 14 N -0.468 5.468 15 Si 0.676 3.324 16 H -0.170 1.170 17 H -0.213 1.213 18 H -0.178 1.178 19 C 0.076 3.924 20 C -0.242 4.242 21 C -0.111 4.111 22 C -0.196 4.196 23 C -0.117 4.117 24 C -0.160 4.160 25 C 0.038 3.962 26 C -0.229 4.229 27 C 0.019 3.981 28 F -0.107 7.107 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.092 0.908 35 H 0.182 0.818 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.129 0.871 41 H 0.099 0.901 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.853 -7.100 -0.743 14.703 hybrid contribution -0.669 0.034 0.758 1.012 sum -13.522 -7.067 0.015 15.257 Atomic orbital electron populations 1.23178 0.77688 1.04377 1.01868 1.86152 1.22018 1.25914 1.87873 1.19171 0.90834 0.85506 0.94731 1.21131 1.00320 0.91311 1.10833 1.20787 0.92356 0.98331 0.89131 1.30781 1.04400 1.21220 1.19625 1.05604 0.72860 0.73262 0.74816 1.93447 1.60606 1.86122 1.53570 1.93295 1.60807 1.57395 1.86032 1.50899 1.14624 1.80000 1.15084 1.19106 0.76770 1.24289 1.24632 0.85355 1.25446 0.94842 0.96485 0.95946 1.69777 1.08144 1.36644 1.32210 0.87207 0.80276 0.82449 0.82510 1.16982 1.21276 1.17846 1.17858 0.91355 0.95976 0.87216 1.22243 0.96065 1.04570 1.01354 1.20772 0.99003 0.99145 0.92225 1.20871 0.96382 1.04574 0.97789 1.20882 0.94752 0.99110 0.97005 1.21102 1.01987 1.01759 0.91200 1.19505 0.97453 0.89420 0.89854 1.21758 0.88062 1.06471 1.06586 1.16739 0.85772 0.82848 1.12757 1.91478 1.76308 1.48384 1.94554 0.87816 0.92172 0.92072 0.83919 0.83213 0.90766 0.81780 0.86793 0.87345 0.86863 0.84253 0.87107 0.90121 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -4.00 10.36 -19.59 -0.20 -4.21 16 3 C 0.14 2.14 6.69 -39.18 -0.26 1.88 16 4 C -0.22 -2.86 9.04 -39.44 -0.36 -3.21 16 5 C 0.01 0.20 9.54 -39.60 -0.38 -0.17 16 6 C -0.68 -12.31 5.88 -39.57 -0.23 -12.54 16 7 S 2.63 56.17 4.62 -107.50 -0.50 55.68 16 8 O -0.95 -22.10 14.47 -57.17 -0.83 -22.92 16 9 O -0.99 -21.44 13.40 -57.17 -0.77 -22.21 16 10 N -0.79 -17.84 2.48 -9.60 -0.02 -17.86 16 11 C -0.31 -7.59 7.43 -15.11 -0.11 -7.70 16 12 H 0.13 3.19 6.02 -52.49 -0.32 2.87 16 13 C 0.09 2.18 4.26 -17.45 -0.07 2.11 16 14 N -0.83 -21.39 13.97 55.49 0.77 -20.62 16 15 Si 0.85 20.09 24.64 -169.99 -4.19 15.90 16 16 H -0.25 -5.55 5.80 56.52 0.33 -5.22 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.18 3.79 3.58 -83.84 -0.30 3.49 16 20 C -0.22 -4.42 9.06 -39.33 -0.36 -4.77 16 21 C -0.09 -1.61 10.04 -39.61 -0.40 -2.01 16 22 C -0.18 -2.94 10.04 -39.51 -0.40 -3.33 16 23 C -0.10 -1.76 9.51 -39.61 -0.38 -2.14 16 24 C -0.14 -2.83 6.37 -39.33 -0.25 -3.08 16 25 C 0.04 0.71 5.88 -104.58 -0.61 0.10 16 26 C -0.17 -3.10 7.97 36.01 0.29 -2.82 16 27 C 0.04 0.67 7.25 -39.30 -0.28 0.38 16 28 F -0.13 -2.19 16.23 2.25 0.04 -2.16 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 32 H 0.14 1.33 6.30 -52.49 -0.33 1.00 16 33 H 0.15 2.05 7.33 -52.49 -0.38 1.67 16 34 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.17 3.34 4.65 -52.61 -0.24 3.09 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.14 2.98 6.74 -52.49 -0.35 2.63 16 40 H 0.11 2.02 7.37 -51.93 -0.38 1.64 16 41 H 0.08 1.28 7.49 -51.93 -0.39 0.89 16 42 H 0.12 2.29 4.20 -51.92 -0.22 2.08 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -29.30 348.60 -7.87 -37.17 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.32 Total: 8.62 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: -3.12 Total: -32.64 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.75 Total: -38.48 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.80 Total: -49.34 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.19 Total: 15.90 kcal Atomic # 16 Polarization: 56.17 SS G_CDS: -0.50 Total: 55.68 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.30 -7.87 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096008324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.330 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds