Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35953 * 116.99798 * 2 1 4 4 C 1.38664 * 120.06276 * 0.02562 * 3 2 1 5 5 C 1.38182 * 119.96623 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.09765 * 359.97438 * 5 4 3 7 7 S 1.76208 * 119.93546 * 180.02562 * 6 5 4 8 8 O 1.42108 * 106.39981 * 230.98066 * 7 6 5 9 9 O 1.42090 * 106.40405 * 3.90023 * 7 6 5 10 10 N 1.65599 * 107.21549 * 117.44439 * 7 6 5 11 11 C 1.36847 * 119.99967 * 111.77259 * 10 7 6 12 12 H 1.07999 * 120.00482 * 321.15437 * 11 10 7 13 13 C 1.38796 * 120.00411 * 141.15422 * 11 10 7 14 14 N 1.31588 * 120.00318 * 161.04224 * 13 11 10 15 15 Si 1.86803 * 119.99657 * 341.04568 * 13 11 10 16 16 H 1.48499 * 109.47217 * 92.21138 * 15 13 11 17 17 H 1.48495 * 109.47256 * 212.20771 * 15 13 11 18 18 H 1.48500 * 109.47354 * 332.21302 * 15 13 11 19 19 C 1.39291 * 119.99926 * 291.76756 * 10 7 6 20 20 C 1.39083 * 120.09002 * 332.37853 * 19 10 7 21 21 C 1.38056 * 119.90742 * 179.78995 * 20 19 10 22 22 C 1.38331 * 120.08781 * 0.46503 * 21 20 19 23 23 C 1.38332 * 120.18464 * 359.79423 * 22 21 20 24 24 C 1.38053 * 120.08656 * 359.96995 * 23 22 21 25 25 C 1.38260 * 120.12861 * 359.97438 * 6 5 4 26 26 C 1.50701 * 119.98661 * 180.02562 * 25 6 5 27 27 C 1.38330 * 120.02424 * 359.79296 * 25 6 5 28 28 F 1.35102 * 120.04380 * 180.23190 * 27 25 6 29 29 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47394 * 59.99918 * 1 2 3 31 31 H 1.09007 * 109.46790 * 299.99441 * 1 2 3 32 32 H 1.07994 * 120.01758 * 359.95263 * 4 3 2 33 33 H 1.08002 * 119.94943 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99678 * 180.02562 * 14 13 11 35 35 H 1.07993 * 120.04281 * 0.02600 * 20 19 10 36 36 H 1.07998 * 119.95211 * 180.25929 * 21 20 19 37 37 H 1.08003 * 119.90807 * 179.76502 * 22 21 20 38 38 H 1.07991 * 119.95508 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.04476 * 179.97438 * 24 23 22 40 40 H 1.09001 * 109.46944 * 84.47128 * 26 25 6 41 41 H 1.08999 * 109.47290 * 204.47279 * 26 25 6 42 42 H 1.09008 * 109.47224 * 324.47340 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9216 3.6053 0.0011 6 6 3.3022 3.6777 0.0016 7 16 4.1003 5.2487 0.0030 8 8 5.0476 5.2184 -1.0559 9 8 3.0696 6.2223 0.0960 10 7 4.9718 5.3545 1.4071 11 6 6.3396 5.3577 1.3649 12 1 6.8598 4.7212 0.6645 13 6 7.0585 6.1791 2.2223 14 7 8.3293 5.9324 2.4582 15 14 6.2218 7.6347 3.0412 16 1 5.6880 7.2193 4.3632 17 1 7.2060 8.7310 3.2272 18 1 5.1064 8.1109 2.1844 19 6 4.3125 5.4402 2.6312 20 6 3.0407 5.9989 2.7005 21 6 2.3890 6.0780 3.9150 22 6 3.0031 5.6114 5.0633 23 6 4.2702 5.0600 4.9995 24 6 4.9267 4.9727 3.7882 25 6 4.0579 2.5199 0.0021 26 6 5.5626 2.6026 0.0033 27 6 3.4332 1.2857 0.0065 28 9 4.1713 0.1541 0.0117 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 0.2137 2.3201 0.0002 33 1 1.3341 4.5115 0.0011 34 1 8.8316 6.5062 3.0577 35 1 2.5622 6.3667 1.8050 36 1 1.3997 6.5079 3.9691 37 1 2.4922 5.6783 6.0125 38 1 4.7463 4.6973 5.8983 39 1 5.9161 4.5425 3.7392 40 1 5.9192 2.7213 1.0265 41 1 5.9771 1.6886 -0.4221 42 1 5.8800 3.4577 -0.5936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096008324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = -91.073079 kcal Electronic energy + Delta-G solvation = -32354.144314 eV Core-core repulsion = 27920.688264 eV Total energy + Delta-G solvation = -4433.456050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -50.01054 -41.27881 -40.56699 -39.01051 -38.42707 -37.11257 -36.90724 -34.11466 -33.69036 -31.73238 -31.63628 -30.32028 -28.83431 -27.76088 -26.66333 -24.30986 -23.50286 -22.99062 -22.94653 -20.59337 -19.86128 -19.48668 -18.90606 -18.72062 -18.17318 -17.46254 -17.38985 -17.02626 -16.98163 -16.39664 -16.23134 -15.92967 -15.69713 -15.36432 -14.98721 -14.85017 -14.68832 -14.65352 -14.45353 -14.27482 -14.25544 -14.04341 -13.55830 -13.40395 -13.28851 -13.19566 -13.02843 -12.99835 -12.67674 -12.43367 -12.30046 -12.24908 -12.14953 -12.10717 -11.77065 -11.48080 -11.43481 -10.62765 -10.02652 -9.72812 -9.64211 -9.00038 -8.53081 -6.20279 -0.71922 -0.41569 -0.14086 0.58380 0.64957 1.30523 1.36070 1.46451 1.85332 1.91226 2.17930 2.25354 2.62198 2.78937 2.96242 3.11829 3.32135 3.51377 3.63425 3.82456 3.95967 4.12003 4.25751 4.26887 4.31999 4.36518 4.42515 4.57314 4.60857 4.62992 4.66747 4.71334 4.72537 4.82092 4.86077 4.95523 5.11389 5.20207 5.33256 5.38371 5.52691 5.69704 5.79321 5.91075 6.03279 6.10923 6.41752 6.92647 6.99713 8.55656 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.004707 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.145538 B = 5946.695493 C = 6562.786066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.320 6.320 3 C 0.159 3.841 4 C -0.197 4.197 5 C 0.015 3.985 6 C -0.692 4.692 7 S 2.663 3.337 8 O -0.977 6.977 9 O -0.987 6.987 10 N -0.806 5.806 11 C -0.330 4.330 12 H 0.107 0.893 13 C 0.060 3.940 14 N -0.881 5.881 15 Si 0.885 3.115 16 H -0.230 1.230 17 H -0.290 1.290 18 H -0.272 1.272 19 C 0.149 3.851 20 C -0.233 4.233 21 C -0.089 4.089 22 C -0.161 4.161 23 C -0.103 4.103 24 C -0.156 4.156 25 C 0.025 3.975 26 C -0.170 4.170 27 C 0.019 3.981 28 F -0.135 7.135 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.193 0.807 33 H 0.171 0.829 34 H 0.282 0.718 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.139 0.861 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.267 -8.361 1.439 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.232 6.232 3 C 0.111 3.889 4 C -0.216 4.216 5 C -0.005 4.005 6 C -0.782 4.782 7 S 2.765 3.235 8 O -0.968 6.968 9 O -0.976 6.976 10 N -0.622 5.622 11 C -0.462 4.462 12 H 0.124 0.876 13 C -0.149 4.149 14 N -0.517 5.517 15 Si 0.710 3.290 16 H -0.153 1.153 17 H -0.217 1.217 18 H -0.197 1.197 19 C 0.050 3.950 20 C -0.255 4.255 21 C -0.107 4.107 22 C -0.180 4.180 23 C -0.121 4.121 24 C -0.178 4.178 25 C 0.023 3.977 26 C -0.226 4.226 27 C -0.001 4.001 28 F -0.114 7.114 29 H 0.145 0.855 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.210 0.790 33 H 0.188 0.812 34 H 0.092 0.908 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.134 0.866 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.033 -7.960 0.675 19.723 hybrid contribution 0.526 0.035 0.317 0.616 sum -17.506 -7.925 0.992 19.242 Atomic orbital electron populations 1.23668 0.74564 1.06730 1.03622 1.86170 1.25149 1.24912 1.86988 1.19259 0.90071 0.86953 0.92663 1.21569 1.02490 0.89380 1.08164 1.21133 0.90972 1.00339 0.88020 1.30237 1.05840 1.18863 1.23242 1.03297 0.72423 0.74415 0.73316 1.93433 1.61925 1.87214 1.54200 1.93310 1.59909 1.58387 1.86032 1.50816 1.14086 1.81003 1.16263 1.18801 0.77925 1.24786 1.24661 0.87589 1.25688 0.95064 0.97638 0.96469 1.69835 1.09315 1.37953 1.34581 0.86701 0.78963 0.80913 0.82462 1.15277 1.21747 1.19658 1.18171 0.92419 0.97376 0.87049 1.22380 0.95603 1.04795 1.02711 1.21251 1.00385 0.97969 0.91089 1.21373 0.95416 1.01818 0.99395 1.21270 0.95501 0.98626 0.96733 1.21085 1.01569 1.02720 0.92469 1.19412 0.96894 0.90272 0.91114 1.21621 0.89315 1.06207 1.05468 1.16873 0.87107 0.82154 1.14016 1.91454 1.76731 1.48459 1.94730 0.85490 0.90208 0.90330 0.78996 0.81172 0.90836 0.82253 0.82863 0.83065 0.84352 0.86567 0.88489 0.88716 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -7.12 10.36 -93.02 -0.96 -8.08 16 3 C 0.16 4.20 6.69 22.53 0.15 4.35 16 4 C -0.20 -4.29 9.04 22.36 0.20 -4.09 16 5 C 0.01 0.41 9.54 22.26 0.21 0.62 16 6 C -0.69 -24.91 5.88 22.28 0.13 -24.78 16 7 S 2.66 116.35 4.62 -56.49 -0.26 116.08 16 8 O -0.98 -48.01 14.47 -128.00 -1.85 -49.86 16 9 O -0.99 -42.46 13.40 -128.00 -1.71 -44.17 16 10 N -0.81 -37.80 2.48 -184.29 -0.46 -38.26 16 11 C -0.33 -17.29 7.43 84.04 0.62 -16.67 16 12 H 0.11 5.85 6.02 -2.91 -0.02 5.84 16 13 C 0.06 3.23 4.26 84.86 0.36 3.59 16 14 N -0.88 -48.58 13.97 21.65 0.30 -48.27 16 15 Si 0.89 42.71 24.64 68.60 1.69 44.40 16 16 H -0.23 -10.23 5.80 99.48 0.58 -9.65 16 17 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 18 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 19 C 0.15 6.41 3.58 38.36 0.14 6.55 16 20 C -0.23 -8.91 9.06 22.43 0.20 -8.71 16 21 C -0.09 -2.69 10.04 22.25 0.22 -2.47 16 22 C -0.16 -4.60 10.04 22.31 0.22 -4.38 16 23 C -0.10 -3.42 9.51 22.25 0.21 -3.21 16 24 C -0.16 -6.43 6.37 22.43 0.14 -6.29 16 25 C 0.03 0.92 5.88 -19.84 -0.12 0.81 16 26 C -0.17 -6.57 7.97 71.24 0.57 -6.00 16 27 C 0.02 0.63 7.25 22.45 0.16 0.79 16 28 F -0.13 -4.59 16.23 44.97 0.73 -3.86 16 29 H 0.13 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.08 0.56 7.66 -2.39 -0.02 0.54 16 31 H 0.08 0.59 7.66 -2.38 -0.02 0.57 16 32 H 0.19 2.24 6.30 -2.91 -0.02 2.23 16 33 H 0.17 3.99 7.33 -2.91 -0.02 3.97 16 34 H 0.28 14.56 8.31 -92.70 -0.77 13.79 16 35 H 0.16 6.21 4.65 -4.75 -0.02 6.19 16 36 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.12 5.29 6.74 -2.91 -0.02 5.27 16 40 H 0.10 3.93 7.37 -2.39 -0.02 3.91 16 41 H 0.09 3.23 7.49 -2.39 -0.02 3.21 16 42 H 0.10 4.12 4.20 -2.38 -0.01 4.11 16 Total: -1.00 -68.83 348.60 2.97 -65.86 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.95 Total: 24.86 kcal Atomic # 6 Polarization: -63.25 SS G_CDS: 4.55 Total: -58.70 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -0.15 Total: -86.53 kcal Atomic # 8 Polarization: -97.59 SS G_CDS: -4.53 Total: -102.12 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.73 Total: -3.86 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.69 Total: 44.40 kcal Atomic # 16 Polarization: 116.35 SS G_CDS: -0.26 Total: 116.08 kcal Total: -68.83 2.97 -65.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096008324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.217 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds