Wall clock time and date at job start Tue Mar 31 2020 07:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47157 * 110.98503 * 2 1 4 4 C 1.52983 * 108.72848 * 54.22239 * 3 2 1 5 5 N 1.46002 * 110.02716 * 50.20491 * 4 3 2 6 6 C 1.37099 * 118.51788 * 161.97062 * 5 4 3 7 7 H 1.07997 * 120.00076 * 205.60690 * 6 5 4 8 8 C 1.38952 * 119.99998 * 25.60914 * 6 5 4 9 9 N 1.31406 * 119.99916 * 14.69543 * 8 6 5 10 10 Si 1.86796 * 119.99955 * 194.69634 * 8 6 5 11 11 H 1.48506 * 109.47286 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46980 * 119.99653 * 10 8 6 13 13 H 1.48494 * 109.47438 * 239.99824 * 10 8 6 14 14 C 1.33693 * 122.96699 * 341.95517 * 5 4 3 15 15 O 1.21293 * 118.61329 * 181.71656 * 14 5 4 16 16 C 1.46997 * 110.99446 * 122.86434 * 2 1 3 17 17 C 1.53122 * 109.24151 * 167.02279 * 16 2 1 18 18 C 1.53178 * 109.31915 * 178.98892 * 17 16 2 19 19 N 1.46931 * 108.77577 * 54.73320 * 18 17 16 20 20 C 1.34772 * 120.64953 * 126.37236 * 19 18 17 21 21 O 1.21283 * 120.00172 * 355.40436 * 20 19 18 22 22 C 1.50696 * 120.00319 * 175.13600 * 20 19 18 23 23 C 1.53182 * 109.54150 * 288.50009 * 22 20 19 24 24 C 1.53096 * 109.16353 * 183.15126 * 23 22 20 25 25 O 1.42901 * 109.41377 * 57.60805 * 24 23 22 26 26 C 1.42913 * 114.09722 * 298.84037 * 25 24 23 27 27 C 1.53087 * 109.41548 * 61.16154 * 26 25 24 28 28 C 1.46937 * 118.70148 * 306.64251 * 19 18 17 29 29 C 1.52746 * 109.01985 * 53.30290 * 28 19 18 30 30 H 1.08999 * 109.47676 * 297.13732 * 1 2 3 31 31 H 1.09006 * 109.46860 * 57.13662 * 1 2 3 32 32 H 1.09001 * 109.47218 * 177.12957 * 1 2 3 33 33 H 1.09000 * 109.59762 * 294.44150 * 3 2 1 34 34 H 1.09001 * 109.58241 * 173.99031 * 3 2 1 35 35 H 1.09002 * 109.37805 * 290.03273 * 4 3 2 36 36 H 1.09006 * 109.37990 * 170.37602 * 4 3 2 37 37 H 0.97005 * 120.00072 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.49415 * 59.03881 * 17 16 2 39 39 H 1.08996 * 109.49623 * 298.94339 * 17 16 2 40 40 H 1.09003 * 109.58528 * 294.94921 * 18 17 16 41 41 H 1.08993 * 109.58770 * 174.51928 * 18 17 16 42 42 H 1.09000 * 109.54383 * 48.76377 * 22 20 19 43 43 H 1.09000 * 109.52138 * 303.05658 * 23 22 20 44 44 H 1.08998 * 109.52457 * 63.24522 * 23 22 20 45 45 H 1.08995 * 109.47773 * 297.62502 * 24 23 22 46 46 H 1.08996 * 109.48111 * 177.59115 * 24 23 22 47 47 H 1.08998 * 109.47679 * 301.17549 * 26 25 24 48 48 H 1.09000 * 109.47706 * 181.13970 * 26 25 24 49 49 H 1.08990 * 109.52491 * 182.48546 * 27 26 25 50 50 H 1.08999 * 109.52644 * 62.29369 * 27 26 25 51 51 H 1.09003 * 109.57882 * 173.14372 * 28 19 18 52 52 H 1.09002 * 109.58069 * 293.55600 * 28 19 18 53 53 H 1.09001 * 109.55896 * 185.47159 * 29 28 19 54 54 H 1.09000 * 109.35536 * 65.42212 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3740 0.0000 4 6 1.3811 2.1359 1.1754 5 7 1.5268 1.3614 2.4045 6 6 1.3885 2.0077 3.6057 7 1 1.8724 1.6163 4.4883 8 6 0.6256 3.1662 3.6875 9 7 -0.1900 3.4864 2.7082 10 14 0.7596 4.2685 5.1896 11 1 1.7411 3.6900 6.1422 12 1 1.2125 5.6201 4.7729 13 1 -0.5676 4.3721 5.8476 14 6 1.7887 0.0504 2.4115 15 8 1.8626 -0.5214 3.4786 16 6 1.9957 -0.7447 1.1527 17 6 3.4917 -0.9992 0.9483 18 6 4.0477 -1.7531 2.1603 19 7 3.2527 -2.9717 2.3647 20 6 3.8506 -4.1771 2.4428 21 8 5.0458 -4.2740 2.2614 22 6 3.0350 -5.4035 2.7617 23 6 2.6044 -5.3647 4.2312 24 6 1.8443 -6.6507 4.5663 25 8 2.6764 -7.7796 4.2915 26 6 3.0713 -7.8939 2.9228 27 6 3.8807 -6.6580 2.5217 28 6 1.7925 -2.8513 2.4761 29 6 1.2626 -2.0840 1.2663 30 1 -0.3634 0.4687 0.9145 31 1 -0.3633 0.5577 -0.8633 32 1 -0.3634 -1.0264 -0.0515 33 1 1.7303 1.8675 -0.9348 34 1 3.0804 1.3493 0.1075 35 1 0.3227 2.3090 0.9803 36 1 1.8874 3.0945 1.2898 37 1 -0.7223 4.2953 2.7652 38 1 4.0115 -0.0470 0.8425 39 1 3.6395 -1.5969 0.0489 40 1 3.9816 -1.1209 3.0458 41 1 5.0881 -2.0220 1.9776 42 1 2.1526 -5.4309 2.1224 43 1 3.4862 -5.2865 4.8672 44 1 1.9563 -4.5045 4.3983 45 1 0.9414 -6.7081 3.9585 46 1 1.5726 -6.6478 5.6218 47 1 2.1844 -7.9676 2.2936 48 1 3.6835 -8.7866 2.7946 49 1 4.1453 -6.7225 1.4664 50 1 4.7883 -6.6059 3.1231 51 1 1.3450 -3.8448 2.5018 52 1 1.5392 -2.3105 3.3880 53 1 0.1942 -1.9048 1.3873 54 1 1.4337 -2.6702 0.3635 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096050099.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:51 Heat of formation + Delta-G solvation = -98.473951 kcal Electronic energy + Delta-G solvation = -36621.586279 eV Core-core repulsion = 32172.475678 eV Total energy + Delta-G solvation = -4449.110602 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.215 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -42.48923 -41.26115 -39.59575 -38.14839 -37.98599 -36.07964 -34.87863 -33.59378 -32.72573 -32.17863 -31.96875 -29.99337 -28.19609 -27.19488 -26.63438 -25.06686 -24.54240 -23.85733 -23.15632 -23.01182 -21.59210 -20.27049 -19.50850 -18.56755 -18.33739 -17.84476 -17.35692 -16.97795 -16.83702 -16.73863 -16.54810 -16.22271 -16.05332 -15.98483 -15.62115 -15.56526 -15.13381 -14.84620 -14.63418 -14.44200 -14.23376 -13.90597 -13.81034 -13.55672 -13.47517 -13.45079 -13.24880 -13.16454 -12.93987 -12.73396 -12.62668 -12.51741 -12.38679 -12.27111 -12.23229 -12.22114 -12.05955 -11.84865 -11.69244 -11.47864 -11.38252 -11.05274 -10.90658 -10.50560 -10.32917 -9.63355 -9.59601 -9.09342 -8.27584 -6.04403 1.30425 1.36916 1.49104 1.56791 1.98400 2.03161 2.21635 2.70591 2.98712 3.03940 3.12517 3.40970 3.58650 3.67514 3.75395 3.77923 3.86760 4.00371 4.08255 4.13516 4.20898 4.26571 4.30299 4.35925 4.41918 4.49707 4.50356 4.56846 4.60324 4.65670 4.68077 4.70763 4.74311 4.78737 4.79047 4.83300 4.85233 4.88622 5.00718 5.07784 5.08950 5.10455 5.12222 5.26668 5.30196 5.40470 5.47577 5.52697 5.86749 5.97875 6.13580 6.28012 6.46452 6.48694 7.14094 7.16309 7.52208 8.03689 8.64174 Molecular weight = 365.21amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.002971 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.399156 B = 9422.134962 C =10259.286287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.511 5.511 3 C 0.032 3.968 4 C 0.104 3.896 5 N -0.449 5.449 6 C -0.342 4.342 7 H 0.069 0.931 8 C 0.003 3.997 9 N -0.892 5.892 10 Si 0.981 3.019 11 H -0.277 1.277 12 H -0.268 1.268 13 H -0.276 1.276 14 C 0.425 3.575 15 O -0.610 6.610 16 C 0.110 3.890 17 C -0.098 4.098 18 C 0.117 3.883 19 N -0.591 5.591 20 C 0.514 3.486 21 O -0.589 6.589 22 C -0.102 4.102 23 C -0.146 4.146 24 C 0.066 3.934 25 O -0.403 6.403 26 C 0.063 3.937 27 C -0.132 4.132 28 C 0.095 3.905 29 C -0.106 4.106 30 H 0.007 0.993 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.271 0.729 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.082 0.918 50 H 0.055 0.945 51 H 0.108 0.892 52 H 0.088 0.912 53 H 0.080 0.920 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -14.603 -7.342 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.234 5.234 3 C -0.097 4.097 4 C -0.021 4.021 5 N -0.167 5.167 6 C -0.471 4.471 7 H 0.086 0.914 8 C -0.199 4.199 9 N -0.530 5.530 10 Si 0.806 3.194 11 H -0.201 1.201 12 H -0.193 1.193 13 H -0.202 1.202 14 C 0.213 3.787 15 O -0.496 6.496 16 C 0.016 3.984 17 C -0.137 4.137 18 C -0.006 4.006 19 N -0.322 5.322 20 C 0.304 3.696 21 O -0.470 6.470 22 C -0.123 4.123 23 C -0.184 4.184 24 C -0.011 4.011 25 O -0.322 6.322 26 C -0.013 4.013 27 C -0.170 4.170 28 C -0.028 4.028 29 C -0.144 4.144 30 H 0.025 0.975 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.127 0.873 49 H 0.101 0.899 50 H 0.074 0.926 51 H 0.126 0.874 52 H 0.106 0.894 53 H 0.098 0.902 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.325 -15.087 -7.299 16.763 hybrid contribution -0.182 2.235 1.595 2.752 sum 0.143 -12.853 -5.704 14.062 Atomic orbital electron populations 1.22551 0.86842 1.03097 1.00720 1.62866 1.08737 1.13191 1.38581 1.22828 1.00105 0.88410 0.98340 1.21916 1.02342 0.94039 0.83792 1.43444 1.60419 1.06386 1.06414 1.19560 1.30632 1.07859 0.89000 0.91355 1.25971 0.93784 0.99168 1.01013 1.70006 1.23390 1.25768 1.33863 0.85056 0.78049 0.78144 0.78187 1.20143 1.19330 1.20205 1.21163 0.82853 0.82455 0.92232 1.90349 1.57721 1.67882 1.33660 1.21174 0.97010 0.94337 0.85857 1.21764 0.92511 1.00823 0.98607 1.21418 0.95684 0.85853 0.97662 1.47999 1.08267 1.05747 1.70179 1.21143 0.87946 0.85009 0.75549 1.90626 1.17172 1.86474 1.52701 1.21401 0.99798 0.91943 0.99138 1.22201 1.01526 1.00781 0.93871 1.22671 0.92352 0.83165 1.02893 1.87920 1.69627 1.46739 1.27938 1.22739 0.98829 0.97345 0.82428 1.22000 0.98586 0.93519 1.02893 1.22251 0.78299 1.01745 1.00457 1.21827 0.99675 0.93186 0.99749 0.97464 0.89542 0.89266 0.86663 0.90320 0.90520 0.93850 0.91876 0.91021 0.88663 0.93434 0.89864 0.85987 0.92764 0.89778 0.90536 0.87613 0.90794 0.87312 0.89901 0.92646 0.87427 0.89413 0.90190 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.07 127.69 1.03 1.49 16 2 N -0.51 -15.48 4.89 -876.21 -4.28 -19.76 16 3 C 0.03 1.00 5.96 86.25 0.51 1.51 16 4 C 0.10 4.38 4.02 86.47 0.35 4.73 16 5 N -0.45 -21.92 2.77 -638.74 -1.77 -23.69 16 6 C -0.34 -18.86 9.03 84.04 0.76 -18.10 16 7 H 0.07 4.09 7.33 -2.91 -0.02 4.06 16 8 C 0.00 0.15 5.09 84.93 0.43 0.58 16 9 N -0.89 -45.82 10.73 21.66 0.23 -45.58 16 10 Si 0.98 42.04 29.58 68.60 2.03 44.07 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 13 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 14 C 0.42 18.99 5.27 87.71 0.46 19.45 16 15 O -0.61 -30.54 10.98 -3.07 -0.03 -30.58 16 16 C 0.11 3.66 0.44 2.72 0.00 3.66 16 17 C -0.10 -3.07 4.91 30.69 0.15 -2.92 16 18 C 0.12 4.09 5.93 86.36 0.51 4.60 16 19 N -0.59 -18.39 2.98 -819.76 -2.44 -20.84 16 20 C 0.51 15.59 6.94 87.66 0.61 16.20 16 21 O -0.59 -21.95 15.34 -3.04 -0.05 -21.99 16 22 C -0.10 -2.21 1.74 -11.42 -0.02 -2.23 16 23 C -0.15 -3.11 5.15 30.69 0.16 -2.95 16 24 C 0.07 1.10 6.84 72.01 0.49 1.60 16 25 O -0.40 -8.14 10.77 -148.98 -1.60 -9.74 16 26 C 0.06 0.99 6.84 72.01 0.49 1.48 16 27 C -0.13 -2.69 4.85 30.68 0.15 -2.54 16 28 C 0.09 2.69 4.68 86.21 0.40 3.09 16 29 C -0.11 -2.94 4.20 30.54 0.13 -2.81 16 30 H 0.01 0.26 5.94 -2.39 -0.01 0.24 16 31 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.09 2.18 6.16 -2.39 -0.01 2.17 16 33 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.08 2.43 6.19 -2.39 -0.01 2.42 16 35 H 0.08 3.51 5.51 -2.39 -0.01 3.50 16 36 H 0.04 1.96 7.84 -2.38 -0.02 1.94 16 37 H 0.27 13.12 8.31 -92.70 -0.77 12.35 16 38 H 0.07 2.27 6.40 -2.39 -0.02 2.25 16 39 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.05 1.99 6.47 -2.39 -0.02 1.97 16 41 H 0.08 2.90 7.00 -2.39 -0.02 2.89 16 42 H 0.12 1.97 6.84 -2.39 -0.02 1.96 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.83 6.56 -2.39 -0.02 1.81 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.05 1.43 7.88 -2.39 -0.02 1.41 16 51 H 0.11 2.21 5.13 -2.39 -0.01 2.20 16 52 H 0.09 3.24 5.22 -2.40 -0.01 3.23 16 53 H 0.08 2.22 6.24 -2.39 -0.01 2.20 16 54 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -69.12 385.76 -0.37 -69.50 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.92 Total: 31.76 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 6.62 Total: 26.85 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -8.26 Total: -109.86 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -1.68 Total: -62.31 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -69.12 -0.37 -69.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050099.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.976 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds