Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86800 * 120.00445 * 2 1 4 4 H 1.48499 * 109.47110 * 270.00280 * 3 2 1 5 5 H 1.48504 * 109.46902 * 29.99510 * 3 2 1 6 6 H 1.48492 * 109.47697 * 149.99934 * 3 2 1 7 7 C 1.38820 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99987 * 163.09435 * 7 2 1 9 9 N 1.36940 * 119.99891 * 343.09375 * 7 2 1 10 10 C 1.46928 * 120.65444 * 151.85591 * 9 7 2 11 11 C 1.53145 * 108.81309 * 126.48303 * 10 9 7 12 12 C 1.53213 * 109.36024 * 54.74012 * 11 10 9 13 13 C 1.53247 * 109.21771 * 298.46656 * 12 11 10 14 14 C 1.46927 * 120.65691 * 331.83623 * 9 7 2 15 15 O 1.42749 * 109.25619 * 57.80481 * 12 11 10 16 16 C 1.43603 * 114.14512 * 27.36653 * 15 12 11 17 17 C 1.52639 * 108.53860 * 59.92582 * 16 15 12 18 18 N 1.46605 * 107.75629 * 32.21303 * 17 16 15 19 19 C 1.39713 * 120.04991 * 89.22904 * 18 17 16 20 20 C 1.38924 * 120.07713 * 0.02562 * 19 18 17 21 21 C 1.38099 * 119.92245 * 179.97438 * 20 19 18 22 22 C 1.38287 * 120.07687 * 359.97438 * 21 20 19 23 23 C 1.38289 * 120.15478 * 0.27456 * 22 21 20 24 24 C 1.38101 * 120.07453 * 359.45586 * 23 22 21 25 25 C 1.39371 * 119.90050 * 269.51103 * 18 17 16 26 26 C 1.38970 * 119.78429 * 227.08931 * 25 18 17 27 27 C 1.38048 * 120.02235 * 180.23128 * 26 25 18 28 28 C 1.38315 * 119.79768 * 359.96701 * 27 26 25 29 29 C 1.37043 * 120.16323 * 359.65365 * 28 27 26 30 30 C 1.38370 * 120.18384 * 47.09617 * 25 18 17 31 31 H 0.97003 * 120.00102 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58043 * 6.68520 * 10 9 7 33 33 H 1.08998 * 109.57576 * 246.28481 * 10 9 7 34 34 H 1.08997 * 109.49199 * 294.77261 * 11 10 9 35 35 H 1.09003 * 109.48780 * 174.70100 * 11 10 9 36 36 H 1.08995 * 109.49935 * 181.56813 * 13 12 11 37 37 H 1.08992 * 109.50286 * 301.68388 * 13 12 11 38 38 H 1.09002 * 109.58926 * 353.40710 * 14 9 7 39 39 H 1.09001 * 109.58814 * 113.83894 * 14 9 7 40 40 H 1.09000 * 109.62439 * 300.21122 * 16 15 12 41 41 H 1.09002 * 109.62624 * 179.64314 * 16 15 12 42 42 H 1.08998 * 109.80788 * 272.64598 * 17 16 15 43 43 H 1.09006 * 109.80427 * 151.77467 * 17 16 15 44 44 H 1.07997 * 120.03766 * 359.94902 * 20 19 18 45 45 H 1.08003 * 119.96133 * 180.02562 * 21 20 19 46 46 H 1.08005 * 119.92425 * 180.02562 * 22 21 20 47 47 H 1.08000 * 119.96318 * 179.69941 * 23 22 21 48 48 H 1.08000 * 120.04002 * 180.24981 * 24 23 22 49 49 H 1.07994 * 119.98672 * 0.20749 * 26 25 18 50 50 H 1.08006 * 120.09865 * 179.97438 * 27 26 25 51 51 H 1.08002 * 119.87510 * 179.97438 * 28 27 26 52 52 H 1.08000 * 119.53408 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2714 9 7 1.3698 -2.3624 0.3459 10 6 1.8137 -3.6533 -0.1973 11 6 2.0647 -4.6183 0.9651 12 6 0.8061 -4.7043 1.8346 13 6 0.4975 -3.3194 2.4138 14 6 0.2256 -2.3408 1.2674 15 8 -0.2933 -5.1315 1.0305 16 6 0.0824 -5.9339 -0.0996 17 6 0.7978 -7.1829 0.4083 18 7 0.2155 -7.5347 1.7070 19 6 -0.8914 -8.3848 1.7702 20 6 -1.4422 -8.8987 0.6030 21 6 -2.5360 -9.7391 0.6692 22 6 -3.0828 -10.0696 1.8957 23 6 -2.5403 -9.5557 3.0593 24 6 -1.4430 -8.7192 3.0008 25 6 0.7643 -7.0151 2.8780 26 6 1.0159 -7.8566 3.9550 27 6 1.5549 -7.3463 5.1190 28 6 1.8437 -5.9966 5.2088 29 6 1.6027 -5.1685 4.1438 30 6 1.0581 -5.6661 2.9698 31 1 -0.4850 0.8401 -0.0004 32 1 2.7354 -3.5144 -0.7623 33 1 1.0409 -4.0602 -0.8495 34 1 2.8979 -4.2544 1.5664 35 1 2.3035 -5.6066 0.5723 36 1 -0.3813 -3.3811 3.0557 37 1 1.3502 -2.9702 2.9958 38 1 0.0980 -1.3351 1.6681 39 1 -0.6772 -2.6420 0.7361 40 1 0.7517 -5.3658 -0.7456 41 1 -0.8093 -6.2233 -0.6557 42 1 1.8619 -6.9777 0.5241 43 1 0.6536 -8.0029 -0.2953 44 1 -1.0157 -8.6410 -0.3552 45 1 -2.9644 -10.1394 -0.2378 46 1 -3.9380 -10.7274 1.9447 47 1 -2.9727 -9.8120 4.0152 48 1 -1.0173 -8.3214 3.9101 49 1 0.7893 -8.9099 3.8814 50 1 1.7506 -7.9991 5.9569 51 1 2.2651 -5.5961 6.1190 52 1 1.8317 -4.1162 4.2251 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096080323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = 76.658722 kcal Electronic energy + Delta-G solvation = -34813.067366 eV Core-core repulsion = 30744.285918 eV Total energy + Delta-G solvation = -4068.781448 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -42.43301 -40.29290 -39.32075 -37.80281 -36.49968 -34.42044 -33.36392 -32.73962 -32.01959 -31.11135 -30.83696 -30.44988 -28.26573 -27.14424 -25.12003 -24.37958 -23.57503 -23.41252 -23.22515 -21.95389 -21.43823 -20.62673 -18.87659 -18.83618 -17.86616 -17.55237 -16.95170 -16.85938 -16.74991 -16.41854 -15.86900 -15.70964 -15.41373 -15.25727 -15.12343 -14.97572 -14.83537 -14.61972 -14.42086 -14.04885 -13.84630 -13.72671 -13.43367 -13.32278 -13.11142 -13.09098 -12.87075 -12.73285 -12.53406 -12.40098 -12.39257 -12.15210 -12.11644 -11.97642 -11.67988 -11.65322 -11.37176 -11.21820 -11.03582 -10.55847 -10.30486 -9.79465 -9.76650 -9.60733 -8.67840 -8.11899 -7.87517 -5.33464 0.28413 0.39459 0.56127 0.84418 1.45523 1.47364 1.56963 1.98668 2.50179 2.70416 2.97394 3.04380 3.26953 3.55431 3.64938 3.74288 3.77353 3.90204 3.98313 4.09107 4.12394 4.17224 4.22529 4.31740 4.34668 4.43610 4.46414 4.51607 4.54280 4.60220 4.63525 4.68055 4.73867 4.75675 4.80894 4.87561 4.90910 4.96840 5.03589 5.07382 5.11585 5.17862 5.30654 5.34457 5.42535 5.49687 5.53583 5.62845 5.63709 5.65704 5.75537 5.75999 5.93607 6.02463 6.33290 6.37655 6.48369 6.60963 7.13315 7.84323 8.37939 9.18812 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.003182 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.156130 B = 8796.326373 C = 9840.868329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.134 3.866 11 C -0.154 4.154 12 C 0.179 3.821 13 C -0.118 4.118 14 C 0.191 3.809 15 O -0.378 6.378 16 C 0.011 3.989 17 C 0.082 3.918 18 N -0.561 5.561 19 C 0.196 3.804 20 C -0.200 4.200 21 C -0.081 4.081 22 C -0.181 4.181 23 C -0.083 4.083 24 C -0.210 4.210 25 C 0.166 3.834 26 C -0.150 4.150 27 C -0.097 4.097 28 C -0.136 4.136 29 C -0.108 4.108 30 C -0.134 4.134 31 H 0.249 0.751 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.051 0.949 39 H -0.007 1.007 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.126 0.874 49 H 0.135 0.865 50 H 0.155 0.845 51 H 0.146 0.854 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 -22.670 7.165 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.328 5.328 10 C 0.009 3.991 11 C -0.192 4.192 12 C 0.140 3.860 13 C -0.157 4.157 14 C 0.066 3.934 15 O -0.297 6.297 16 C -0.066 4.066 17 C -0.040 4.040 18 N -0.263 5.263 19 C 0.097 3.903 20 C -0.222 4.222 21 C -0.099 4.099 22 C -0.201 4.201 23 C -0.101 4.101 24 C -0.231 4.231 25 C 0.072 3.928 26 C -0.170 4.170 27 C -0.115 4.115 28 C -0.154 4.154 29 C -0.126 4.126 30 C -0.137 4.137 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.011 0.989 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.161 0.839 46 H 0.157 0.843 47 H 0.156 0.844 48 H 0.143 0.857 49 H 0.153 0.847 50 H 0.173 0.827 51 H 0.164 0.836 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.687 -22.406 7.105 23.515 hybrid contribution 0.240 1.498 -0.304 1.547 sum 0.928 -20.908 6.800 22.006 Atomic orbital electron populations 1.70208 1.06790 1.25791 1.55201 1.25815 0.95953 1.01551 1.01193 0.85299 0.78104 0.79579 0.77588 1.21099 1.22035 1.19388 1.19505 0.92805 0.85927 1.41151 0.91398 1.44244 1.35673 1.02244 1.50668 1.21421 0.97868 0.86096 0.93742 1.22926 0.97098 1.00790 0.98401 1.19930 0.86669 0.91059 0.88376 1.22225 1.00775 0.94171 0.98557 1.20352 0.87866 0.96564 0.88666 1.88083 1.32126 1.69829 1.39639 1.23787 1.01920 0.91593 0.89329 1.22659 0.98223 0.98265 0.84822 1.43773 1.29978 1.48418 1.04163 1.18059 0.87104 0.90166 0.94990 1.20895 1.00758 1.03825 0.96714 1.21208 0.94308 0.95590 0.98823 1.21257 1.02575 1.03919 0.92324 1.21187 0.94173 0.95264 0.99513 1.21193 1.00831 1.04597 0.96521 1.17335 0.96971 0.90608 0.87916 1.21287 1.02065 0.99655 0.93999 1.21334 0.97008 0.95616 0.97549 1.21091 1.01349 0.93998 0.98976 1.21037 0.98413 1.00681 0.92480 1.20522 1.03451 0.92739 0.96940 0.94186 0.92317 0.94711 0.91526 0.88956 0.92847 0.90778 0.93044 0.98932 0.89556 0.88790 0.88898 0.86820 0.85089 0.83947 0.84340 0.84405 0.85671 0.84695 0.82730 0.83607 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 11.20 21.65 0.24 -56.18 16 2 C -0.05 -2.80 4.92 84.87 0.42 -2.38 16 3 Si 0.97 45.11 29.59 68.60 2.03 47.14 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.26 -14.56 9.58 84.03 0.81 -13.76 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.60 -30.74 2.99 -699.22 -2.09 -32.83 16 10 C 0.13 5.45 5.85 86.35 0.50 5.96 16 11 C -0.15 -5.18 4.22 30.71 0.13 -5.05 16 12 C 0.18 6.37 0.60 -11.32 -0.01 6.36 16 13 C -0.12 -4.86 4.32 30.73 0.13 -4.73 16 14 C 0.19 9.76 5.05 86.35 0.44 10.20 16 15 O -0.38 -14.35 8.74 -148.98 -1.30 -15.65 16 16 C 0.01 0.31 6.06 71.86 0.44 0.75 16 17 C 0.08 1.94 5.13 86.24 0.44 2.38 16 18 N -0.56 -14.91 2.23 -508.37 -1.13 -16.05 16 19 C 0.20 5.06 6.40 38.22 0.24 5.31 16 20 C -0.20 -4.51 9.21 22.40 0.21 -4.30 16 21 C -0.08 -1.57 10.04 22.25 0.22 -1.34 16 22 C -0.18 -3.41 10.04 22.29 0.22 -3.19 16 23 C -0.08 -1.71 10.04 22.25 0.22 -1.48 16 24 C -0.21 -5.17 8.23 22.40 0.18 -4.99 16 25 C 0.17 4.64 5.21 38.15 0.20 4.83 16 26 C -0.15 -3.45 7.31 22.40 0.16 -3.28 16 27 C -0.10 -1.89 10.05 22.24 0.22 -1.67 16 28 C -0.14 -2.94 9.99 22.01 0.22 -2.72 16 29 C -0.11 -2.99 9.00 22.09 0.20 -2.79 16 30 C -0.13 -4.13 4.79 -19.67 -0.09 -4.23 16 31 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 33 H 0.04 1.45 5.02 -2.39 -0.01 1.43 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.09 2.58 4.12 -2.39 -0.01 2.57 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 2.92 6.36 -2.39 -0.02 2.91 16 38 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16 39 H -0.01 -0.42 7.77 -2.39 -0.02 -0.44 16 40 H 0.09 2.58 3.82 -2.39 -0.01 2.57 16 41 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.09 2.12 5.36 -2.39 -0.01 2.10 16 43 H 0.11 2.04 6.25 -2.38 -0.01 2.03 16 44 H 0.13 2.55 6.16 -2.91 -0.02 2.53 16 45 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 46 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 47 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 48 H 0.13 3.10 5.09 -2.91 -0.01 3.09 16 49 H 0.14 2.81 6.78 -2.91 -0.02 2.79 16 50 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 51 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 52 H 0.12 3.48 5.93 -2.91 -0.02 3.46 16 Total: -1.00 -69.60 379.69 4.21 -65.39 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.96 Total: 28.32 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 5.51 Total: -20.13 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -2.98 Total: -105.06 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.30 Total: -15.65 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.60 4.21 -65.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096080323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.044 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds