Wall clock time and date at job start Tue Mar 31 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47452 * 2 1 4 4 C 1.32995 * 120.00086 * 122.41390 * 3 2 1 5 5 C 1.50703 * 119.99916 * 354.71924 * 4 3 2 6 6 C 1.47100 * 120.00138 * 174.71780 * 4 3 2 7 7 O 1.21617 * 119.99734 * 262.54269 * 6 4 3 8 8 N 1.34773 * 120.00257 * 82.53607 * 6 4 3 9 9 C 1.47609 * 122.42837 * 354.38948 * 8 6 4 10 10 S 1.84335 * 102.51621 * 155.10826 * 9 8 6 11 11 C 1.84207 * 93.82705 * 33.71352 * 10 9 8 12 12 C 1.45499 * 122.43082 * 174.66903 * 8 6 4 13 13 H 1.08996 * 108.75536 * 302.05372 * 12 8 6 14 14 C 1.50698 * 108.75295 * 60.27531 * 12 8 6 15 15 O 1.21287 * 119.99638 * 18.38907 * 14 12 8 16 16 N 1.34767 * 120.00203 * 198.38626 * 14 12 8 17 17 C 1.46502 * 120.00256 * 3.56470 * 16 14 12 18 18 C 1.50693 * 109.46968 * 95.09464 * 17 16 14 19 19 H 1.07999 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99770 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00164 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47165 * 60.00072 * 22 20 18 24 24 H 1.48493 * 109.47193 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47265 * 300.00511 * 22 20 18 26 26 C 1.46501 * 120.00227 * 183.56575 * 16 14 12 27 27 C 1.53008 * 109.47335 * 94.74873 * 26 16 14 28 28 C 1.47194 * 109.47032 * 180.02562 * 27 26 16 29 29 N 9.49210 * 135.94106 * 139.61366 * 3 1 2 30 30 H 1.09004 * 109.47134 * 300.00240 * 1 2 3 31 31 H 1.09008 * 109.47003 * 59.99777 * 1 2 3 32 32 H 1.08997 * 109.47500 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47603 * 239.99991 * 2 1 3 34 34 H 1.08998 * 109.46975 * 120.00099 * 2 1 3 35 35 H 1.07993 * 119.99764 * 302.41293 * 3 2 1 36 36 H 1.09001 * 109.46975 * 184.87003 * 5 4 3 37 37 H 1.09007 * 109.46819 * 304.86065 * 5 4 3 38 38 H 1.08994 * 109.47586 * 64.86356 * 5 4 3 39 39 H 1.09006 * 110.77274 * 273.47062 * 9 8 6 40 40 H 1.08995 * 110.77715 * 36.89174 * 9 8 6 41 41 H 1.09002 * 111.04900 * 209.57479 * 11 10 9 42 42 H 1.09001 * 111.05296 * 85.59704 * 11 10 9 43 43 H 1.08998 * 109.47227 * 215.10185 * 17 16 14 44 44 H 1.08998 * 109.46750 * 335.09701 * 17 16 14 45 45 H 0.97000 * 120.00158 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47079 * 214.74374 * 26 16 14 47 47 H 1.08993 * 109.47002 * 334.74586 * 26 16 14 48 48 H 1.09007 * 109.46542 * 299.99807 * 27 26 16 49 49 H 1.08993 * 109.46814 * 59.99717 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8361 1.8420 0.9723 5 6 3.1491 0.9371 2.1361 6 6 3.4197 3.1909 0.9117 7 8 4.5492 3.3463 0.4885 8 7 2.7027 4.2545 1.3251 9 6 1.2885 4.1453 1.7338 10 16 1.0869 5.5873 2.8643 11 6 2.2630 6.6472 1.9226 12 6 3.2647 5.5948 1.3953 13 1 4.1331 5.5766 2.0537 14 6 3.7125 6.0052 0.0161 15 8 3.2871 5.4215 -0.9583 16 7 4.5856 7.0207 -0.1345 17 6 5.1594 7.6744 1.0443 18 6 6.4943 7.0524 1.3637 19 1 6.8772 6.2506 0.7498 20 6 7.2268 7.5070 2.4398 21 7 6.7603 8.4829 3.1877 22 14 8.8819 6.7364 2.8354 23 1 9.7976 6.9097 1.6791 24 1 9.4629 7.3981 4.0310 25 1 8.7007 5.2884 3.1106 26 6 4.9610 7.4709 -1.4771 27 6 4.0740 8.6485 -1.8868 28 6 4.4508 9.1004 -3.2360 29 7 4.7422 9.4498 -4.2769 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 1.7397 2.0970 -0.7896 36 1 3.7475 1.4801 2.8678 37 1 2.2195 0.6073 2.6001 38 1 3.7065 0.0698 1.7825 39 1 0.6287 4.2328 0.8705 40 1 1.1105 3.2102 2.2646 41 1 2.7569 7.3631 2.5796 42 1 1.7597 7.1554 1.1001 43 1 5.2927 8.7371 0.8416 44 1 4.4872 7.5480 1.8930 45 1 7.2758 8.8030 3.9445 46 1 6.0046 7.7853 -1.4764 47 1 4.8285 6.6527 -2.1850 48 1 3.0303 8.3340 -1.8876 49 1 4.2065 9.4666 -1.1789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096401052.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:07 Heat of formation + Delta-G solvation = -34.910752 kcal Electronic energy + Delta-G solvation = -31867.224115 eV Core-core repulsion = 27727.789597 eV Total energy + Delta-G solvation = -4139.434518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.86309 -40.32581 -38.05199 -37.25758 -37.12635 -36.80809 -34.72403 -33.44742 -32.52267 -31.51232 -29.08338 -28.44508 -28.02776 -26.22694 -25.56541 -24.95113 -23.53410 -21.77816 -20.29388 -19.32264 -19.00861 -18.63701 -18.34993 -18.12734 -17.79112 -16.85659 -16.82053 -16.36876 -16.14350 -16.02181 -15.74765 -15.44461 -15.10679 -14.90701 -14.77954 -14.45966 -14.39409 -14.29376 -14.05025 -14.00342 -13.66248 -13.61255 -13.43233 -13.41841 -13.10034 -13.04614 -13.02364 -12.95869 -12.76814 -12.72808 -12.56151 -12.28678 -12.17988 -11.92243 -11.84930 -11.69653 -11.68173 -11.02941 -10.75039 -10.55831 -9.95008 -9.91838 -9.56447 -8.92120 -8.21146 -6.31046 0.54169 0.75790 0.85305 1.38466 1.39164 1.41519 1.48173 1.55372 1.57882 1.75209 1.77933 2.27649 2.42302 3.09183 3.12065 3.16442 3.46642 3.55609 3.92035 3.96825 4.05773 4.08895 4.11145 4.21042 4.24070 4.29242 4.38297 4.50431 4.52205 4.53170 4.70552 4.76884 4.80075 4.81118 4.91651 4.97930 5.00332 5.04328 5.13119 5.20907 5.25774 5.39174 5.56508 5.63160 5.64706 5.79897 6.03525 6.07973 6.48950 6.51648 6.78788 6.95606 7.21913 7.40509 8.83433 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.007437 B = 0.003748 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3763.941177 B = 7468.583064 C = 8815.352980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.092 4.092 4 C -0.178 4.178 5 C -0.098 4.098 6 C 0.566 3.434 7 O -0.567 6.567 8 N -0.596 5.596 9 C 0.160 3.840 10 S -0.255 6.255 11 C -0.051 4.051 12 C 0.116 3.884 13 H 0.092 0.908 14 C 0.519 3.481 15 O -0.574 6.574 16 N -0.590 5.590 17 C 0.245 3.755 18 C -0.550 4.550 19 H 0.037 0.963 20 C 0.036 3.964 21 N -0.906 5.906 22 Si 0.936 3.064 23 H -0.276 1.276 24 H -0.275 1.275 25 H -0.285 1.285 26 C 0.123 3.877 27 C -0.027 4.027 28 C 0.244 3.756 29 N -0.489 5.489 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.269 0.731 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.126 0.874 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 -11.185 1.339 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.111 4.111 4 C -0.181 4.181 5 C -0.155 4.155 6 C 0.355 3.645 7 O -0.445 6.445 8 N -0.331 5.331 9 C -0.072 4.072 10 S -0.028 6.028 11 C -0.200 4.200 12 C 0.007 3.993 13 H 0.110 0.890 14 C 0.305 3.695 15 O -0.454 6.454 16 N -0.320 5.320 17 C 0.125 3.875 18 C -0.589 4.589 19 H 0.055 0.945 20 C -0.166 4.166 21 N -0.545 5.545 22 Si 0.763 3.237 23 H -0.202 1.202 24 H -0.199 1.199 25 H -0.211 1.211 26 C -0.002 4.002 27 C -0.068 4.068 28 C -0.074 4.074 29 N -0.167 5.167 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.139 0.861 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.144 0.856 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.811 -10.572 0.272 19.861 hybrid contribution 2.294 -0.233 -0.501 2.360 sum -14.516 -10.805 -0.229 18.098 Atomic orbital electron populations 1.21691 0.93356 1.02780 1.02378 1.20810 0.97350 0.91186 1.04095 1.23469 0.93452 0.98817 0.95389 1.21322 1.02195 0.92812 1.01810 1.20717 1.03431 0.97618 0.93721 1.19158 0.84632 0.85572 0.75123 1.90865 1.21267 1.86362 1.45985 1.48341 1.12378 1.05906 1.66436 1.24501 0.82490 1.00681 0.99523 1.88252 1.59917 1.13820 1.40838 1.24481 0.95202 0.97547 1.02770 1.21157 0.98656 0.84017 0.95455 0.89013 1.20698 0.78793 0.79110 0.90868 1.90582 1.58898 1.54405 1.41531 1.48018 1.42202 1.33790 1.07986 1.19362 0.92420 0.93362 0.82357 1.21620 1.05323 1.19080 1.12893 0.94494 1.25334 1.00259 0.95203 0.95791 1.69905 1.39382 1.27124 1.18111 0.85957 0.81352 0.78516 0.77923 1.20180 1.19948 1.21076 1.21130 0.98966 0.96006 0.84113 1.19686 1.02417 0.99818 0.84848 1.29236 0.91802 0.91781 0.94532 1.81203 1.10511 1.11174 1.13810 0.91888 0.92835 0.91017 0.90016 0.89236 0.87932 0.93368 0.87546 0.89938 0.87107 0.84173 0.84367 0.86144 0.93658 0.93448 0.92196 0.90124 0.91277 0.85586 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.89 71.98 0.71 -0.68 16 2 C -0.10 -1.24 6.21 29.85 0.19 -1.06 16 3 C -0.09 -1.85 9.15 24.52 0.22 -1.63 16 4 C -0.18 -4.38 4.28 -18.70 -0.08 -4.46 16 5 C -0.10 -1.81 8.55 71.24 0.61 -1.20 16 6 C 0.57 19.92 6.33 86.57 0.55 20.47 16 7 O -0.57 -26.67 16.05 4.91 0.08 -26.59 16 8 N -0.60 -18.47 2.67 -811.27 -2.16 -20.63 16 9 C 0.16 3.42 7.22 127.56 0.92 4.34 16 10 S -0.26 -5.87 23.44 -56.49 -1.32 -7.19 16 11 C -0.05 -1.33 6.34 72.51 0.46 -0.87 16 12 C 0.12 3.99 2.12 44.96 0.10 4.09 16 13 H 0.09 3.83 7.07 -2.39 -0.02 3.81 16 14 C 0.52 19.89 5.66 87.66 0.50 20.38 16 15 O -0.57 -24.14 15.10 5.94 0.09 -24.05 16 16 N -0.59 -22.03 2.46 -826.17 -2.03 -24.06 16 17 C 0.25 10.22 4.80 85.63 0.41 10.63 16 18 C -0.55 -27.95 9.33 25.60 0.24 -27.72 16 19 H 0.04 2.05 7.81 -2.91 -0.02 2.02 16 20 C 0.04 1.83 5.46 84.66 0.46 2.29 16 21 N -0.91 -46.68 13.29 21.45 0.28 -46.40 16 22 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 26 C 0.12 4.02 5.46 86.38 0.47 4.49 16 27 C -0.03 -0.63 6.03 28.79 0.17 -0.46 16 28 C 0.24 6.77 15.43 89.44 1.38 8.15 16 29 N -0.49 -16.19 18.54 20.00 0.37 -15.82 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.09 0.93 5.86 -2.39 -0.01 0.92 16 35 H 0.10 2.34 8.05 -2.91 -0.02 2.32 16 36 H 0.05 1.06 7.99 -2.39 -0.02 1.04 16 37 H 0.11 1.22 7.73 -2.38 -0.02 1.20 16 38 H 0.08 1.37 7.84 -2.39 -0.02 1.35 16 39 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.14 2.27 7.37 -2.39 -0.02 2.25 16 41 H 0.14 3.60 6.86 -2.39 -0.02 3.59 16 42 H 0.12 2.69 7.84 -2.39 -0.02 2.68 16 43 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 44 H 0.05 1.94 4.53 -2.39 -0.01 1.93 16 45 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 46 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 47 H 0.07 2.47 7.24 -2.39 -0.02 2.45 16 48 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 49 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -72.13 422.38 5.60 -66.52 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.96 Total: 16.98 kcal Atomic # 6 Polarization: 29.46 SS G_CDS: 7.31 Total: 36.77 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.54 Total: -106.90 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: 0.17 Total: -50.64 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -5.87 SS G_CDS: -1.32 Total: -7.19 kcal Total: -72.13 5.60 -66.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096401052.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.610 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds