Wall clock time and date at job start Tue Mar 31 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46965 * 2 1 4 4 C 1.32997 * 120.00219 * 118.92642 * 3 2 1 5 5 C 1.50705 * 119.99819 * 356.81609 * 4 3 2 6 6 C 1.47100 * 120.00291 * 176.80957 * 4 3 2 7 7 O 1.21620 * 119.99621 * 7.50746 * 6 4 3 8 8 N 1.34773 * 120.00268 * 187.50081 * 6 4 3 9 9 C 1.47607 * 122.42733 * 4.92337 * 8 6 4 10 10 S 1.84334 * 102.51784 * 155.10923 * 9 8 6 11 11 C 1.84217 * 93.82660 * 33.71064 * 10 9 8 12 12 C 1.45504 * 122.43300 * 185.20371 * 8 6 4 13 13 H 1.09003 * 108.74653 * 60.27158 * 12 8 6 14 14 C 1.50695 * 108.75321 * 302.05370 * 12 8 6 15 15 O 1.21279 * 120.00311 * 335.94147 * 14 12 8 16 16 N 1.34778 * 119.99974 * 155.94312 * 14 12 8 17 17 C 1.46504 * 119.99894 * 3.68512 * 16 14 12 18 18 C 1.50694 * 109.47235 * 89.77840 * 17 16 14 19 19 H 1.08004 * 120.00050 * 5.11864 * 18 17 16 20 20 C 1.37879 * 119.99825 * 185.12646 * 18 17 16 21 21 N 1.31516 * 119.99650 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00111 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47292 * 90.00327 * 22 20 18 24 24 H 1.48501 * 109.47125 * 209.99900 * 22 20 18 25 25 H 1.48498 * 109.47080 * 329.99949 * 22 20 18 26 26 C 1.46498 * 120.00120 * 183.68832 * 16 14 12 27 27 C 1.52999 * 109.47386 * 94.45327 * 26 16 14 28 28 C 1.47202 * 109.46856 * 184.92038 * 27 26 16 29 29 N 9.76364 * 116.67060 * 329.93448 * 2 1 3 30 30 H 1.09000 * 109.46766 * 299.99879 * 1 2 3 31 31 H 1.08994 * 109.47175 * 59.99807 * 1 2 3 32 32 H 1.09000 * 109.46830 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47427 * 119.99545 * 2 1 3 34 34 H 1.08997 * 109.47666 * 240.00073 * 2 1 3 35 35 H 1.08007 * 120.00305 * 298.92759 * 3 2 1 36 36 H 1.09002 * 109.47112 * 92.40740 * 5 4 3 37 37 H 1.08995 * 109.46717 * 212.40722 * 5 4 3 38 38 H 1.08999 * 109.46705 * 332.40886 * 5 4 3 39 39 H 1.08999 * 110.77220 * 273.47216 * 9 8 6 40 40 H 1.08993 * 110.77563 * 36.89737 * 9 8 6 41 41 H 1.08996 * 111.05324 * 209.56992 * 11 10 9 42 42 H 1.09004 * 111.08354 * 85.61226 * 11 10 9 43 43 H 1.08997 * 109.46991 * 209.78045 * 17 16 14 44 44 H 1.09002 * 109.46828 * 329.77471 * 17 16 14 45 45 H 0.97005 * 119.99746 * 179.97438 * 21 20 18 46 46 H 1.09006 * 109.46623 * 214.45334 * 26 16 14 47 47 H 1.08997 * 109.46777 * 334.44913 * 26 16 14 48 48 H 1.08996 * 109.46978 * 304.91984 * 27 26 16 49 49 H 1.09001 * 109.47288 * 64.92528 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.7792 1.8622 1.0081 5 6 3.0636 0.9643 2.1846 6 6 3.3279 3.2266 0.9747 7 8 2.9895 3.9967 0.0963 8 7 4.2055 3.6233 1.9175 9 6 4.7339 2.7038 2.9441 10 16 6.3397 3.4885 3.3950 11 6 5.7132 5.2028 3.1452 12 6 4.6962 4.9906 2.0008 13 1 3.8490 5.6578 2.1596 14 6 5.3554 5.3492 0.6940 15 8 5.7962 4.4758 -0.0227 16 7 5.4553 6.6407 0.3217 17 6 4.9962 7.7005 1.2231 18 6 6.1323 8.1273 2.1164 19 1 7.1199 7.7163 1.9677 20 6 5.9109 9.0424 3.1237 21 7 6.9023 9.4145 3.9036 22 14 4.2028 9.7537 3.3805 23 1 3.4480 8.8980 4.3310 24 1 4.3165 11.1270 3.9340 25 1 3.4860 9.8015 2.0809 26 6 6.0228 6.9848 -0.9843 27 6 4.8940 7.1453 -2.0046 28 6 5.4689 7.3743 -3.3402 29 7 5.9125 7.5509 -4.3710 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8935 -0.5138 -0.8899 35 1 1.7858 2.0808 -0.8186 36 1 3.9979 0.4289 2.0156 37 1 3.1483 1.5665 3.0891 38 1 2.2501 0.2479 2.2998 39 1 4.0667 2.6610 3.8050 40 1 4.8932 1.7094 2.5272 41 1 6.5162 5.8720 2.8363 42 1 5.2201 5.5749 4.0433 43 1 4.6547 8.5535 0.6368 44 1 4.1742 7.3271 1.8339 45 1 6.7466 10.0586 4.6120 46 1 6.5764 7.9204 -0.9047 47 1 6.6956 6.1910 -1.3086 48 1 4.2873 6.2400 -2.0206 49 1 4.2711 7.9955 -1.7266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096401053.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:12 Heat of formation + Delta-G solvation = 8.987068 kcal Electronic energy + Delta-G solvation = -32043.604197 eV Core-core repulsion = 27906.073231 eV Total energy + Delta-G solvation = -4137.530966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.66087 -39.06241 -36.81923 -36.32495 -36.04797 -35.28317 -33.09702 -32.58755 -31.44830 -30.14157 -28.27099 -27.95445 -26.55767 -25.12904 -24.27948 -22.90090 -22.60338 -20.69371 -18.82334 -18.34969 -17.57977 -17.44750 -17.09667 -16.78943 -16.66640 -15.73401 -15.43924 -15.35381 -14.82542 -14.67907 -14.45123 -14.27449 -14.07287 -13.68351 -13.61476 -13.56322 -13.35404 -13.15246 -12.79850 -12.66487 -12.50534 -12.44684 -12.42636 -12.31362 -12.14880 -12.11344 -11.87373 -11.59063 -11.53539 -11.28775 -11.09449 -10.89742 -10.85566 -10.65819 -10.41364 -10.31547 -9.77270 -9.66481 -9.57935 -9.22087 -8.87631 -8.52045 -7.96670 -7.65316 -6.36403 -4.39658 1.26021 1.78307 2.22890 2.62716 2.87314 2.95572 3.06150 3.16331 3.18587 3.20094 3.24585 3.61141 4.13418 4.20847 4.35516 4.61176 4.68382 4.75735 4.79254 4.92532 4.93799 4.97511 4.99840 5.03158 5.21714 5.29475 5.32182 5.34725 5.38430 5.41340 5.57811 5.65893 5.68659 5.68995 5.76448 5.84730 5.92964 6.06116 6.20825 6.25031 6.29556 6.31187 6.41206 6.52897 7.13609 7.22685 7.27397 7.71382 7.91049 8.14079 8.23734 8.65839 8.76673 9.21809 10.74922 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.003904 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.391922 B = 7170.246306 C = 8986.713177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.069 4.069 4 C -0.180 4.180 5 C -0.138 4.138 6 C 0.572 3.428 7 O -0.525 6.525 8 N -0.594 5.594 9 C 0.145 3.855 10 S -0.287 6.287 11 C -0.045 4.045 12 C 0.119 3.881 13 H 0.109 0.891 14 C 0.526 3.474 15 O -0.538 6.538 16 N -0.590 5.590 17 C 0.204 3.796 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.082 3.918 21 N -0.882 5.882 22 Si 0.865 3.135 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.263 1.263 26 C 0.128 3.872 27 C -0.046 4.046 28 C 0.222 3.778 29 N -0.450 5.450 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.154 0.846 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.029 0.971 45 H 0.269 0.731 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.112 0.888 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.687 -15.563 0.527 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.089 4.089 4 C -0.183 4.183 5 C -0.195 4.195 6 C 0.362 3.638 7 O -0.401 6.401 8 N -0.330 5.330 9 C -0.088 4.088 10 S -0.060 6.060 11 C -0.193 4.193 12 C 0.010 3.990 13 H 0.126 0.874 14 C 0.312 3.688 15 O -0.415 6.415 16 N -0.321 5.321 17 C 0.083 3.917 18 C -0.587 4.587 19 H 0.101 0.899 20 C -0.123 4.123 21 N -0.518 5.518 22 Si 0.691 3.309 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.187 1.187 26 C 0.003 3.997 27 C -0.088 4.088 28 C -0.096 4.096 29 N -0.127 5.127 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.171 0.829 42 H 0.128 0.872 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.130 0.870 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.813 -15.666 -1.345 18.534 hybrid contribution -2.028 1.151 0.523 2.390 sum -11.841 -14.515 -0.822 18.750 Atomic orbital electron populations 1.21699 0.94523 1.01880 1.02430 1.20913 0.96596 0.93588 1.03494 1.23547 0.92126 0.96661 0.96574 1.21253 1.03492 0.94419 0.99161 1.21562 1.02336 0.99041 0.96522 1.18171 0.77899 0.87684 0.80072 1.90784 1.60035 1.55046 1.34280 1.48134 1.44721 1.09021 1.31080 1.25193 0.93144 0.97181 0.93236 1.88462 1.19788 1.07527 1.90241 1.24767 1.01444 0.94101 0.99039 1.21226 0.98733 0.83823 0.95194 0.87361 1.20195 0.79117 0.82611 0.86855 1.90627 1.48529 1.48052 1.54325 1.47749 1.61528 1.06141 1.16654 1.19921 0.95888 0.86262 0.89609 1.21324 0.96520 1.26297 1.14516 0.89941 1.24846 0.96660 0.95566 0.95228 1.69880 1.31369 1.31872 1.18691 0.87018 0.84968 0.79506 0.79405 1.19746 1.20767 1.18694 1.21117 0.93806 1.03008 0.81799 1.19785 0.99693 1.05466 0.83829 1.29092 0.93314 0.92548 0.94662 1.81170 1.09246 1.09805 1.12512 0.92439 0.92338 0.92268 0.90250 0.90104 0.85563 0.90597 0.90023 0.90690 0.88323 0.85666 0.82867 0.87233 0.94331 0.95282 0.92115 0.89140 0.89584 0.87039 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.11 -0.77 6.11 -27.88 -0.17 -0.94 16 3 C -0.07 -0.72 9.09 -36.13 -0.33 -1.04 16 4 C -0.18 -2.06 5.94 -102.84 -0.61 -2.67 16 5 C -0.14 -1.07 7.34 36.01 0.26 -0.80 16 6 C 0.57 8.90 7.02 -12.67 -0.09 8.81 16 7 O -0.52 -9.80 15.13 -2.05 -0.03 -9.83 16 8 N -0.59 -8.93 2.70 -170.40 -0.46 -9.39 16 9 C 0.15 1.73 5.54 60.45 0.33 2.06 16 10 S -0.29 -4.39 23.44 -107.50 -2.52 -6.91 16 11 C -0.05 -0.76 6.33 37.97 0.24 -0.52 16 12 C 0.12 2.01 2.24 -68.80 -0.15 1.86 16 13 H 0.11 1.81 6.25 -51.93 -0.32 1.48 16 14 C 0.53 10.10 5.39 -10.99 -0.06 10.04 16 15 O -0.54 -11.58 15.31 -1.75 -0.03 -11.61 16 16 N -0.59 -10.81 2.46 -175.06 -0.43 -11.24 16 17 C 0.20 3.93 3.96 -5.19 -0.02 3.91 16 18 C -0.55 -12.50 7.74 -34.44 -0.27 -12.76 16 19 H 0.08 2.13 7.67 -52.48 -0.40 1.73 16 20 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.88 -23.25 13.96 55.43 0.77 -22.48 16 22 Si 0.86 17.86 27.37 -169.99 -4.65 13.20 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.26 -5.14 6.69 56.52 0.38 -4.76 16 26 C 0.13 2.08 5.44 -4.04 -0.02 2.06 16 27 C -0.05 -0.64 6.03 -29.52 -0.18 -0.81 16 28 C 0.22 3.34 15.43 -20.76 -0.32 3.02 16 29 N -0.45 -7.76 18.54 42.15 0.78 -6.98 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.48 5.40 -51.93 -0.28 0.20 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.13 1.48 7.51 -52.48 -0.39 1.09 16 36 H 0.08 0.54 6.88 -51.93 -0.36 0.18 16 37 H 0.08 0.59 4.67 -51.93 -0.24 0.34 16 38 H 0.07 0.45 6.02 -51.93 -0.31 0.13 16 39 H 0.10 0.89 6.82 -51.93 -0.35 0.54 16 40 H 0.13 1.28 4.95 -51.93 -0.26 1.02 16 41 H 0.15 3.02 5.56 -51.93 -0.29 2.73 16 42 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.04 0.72 7.48 -51.93 -0.39 0.33 16 44 H 0.03 0.55 5.01 -51.93 -0.26 0.29 16 45 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 46 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 47 H 0.09 1.49 7.25 -51.93 -0.38 1.11 16 48 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 49 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 403.64 15.07 6.08 6.08 Total: -1.00 -30.94 403.64 -8.37 -39.31 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.78 Total: 6.33 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -1.11 Total: 13.51 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.67 Total: -50.08 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.65 Total: 13.20 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -2.52 Total: -6.91 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.94 -8.37 -39.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096401053.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.293 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds