Wall clock time and date at job start Tue Mar 31 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46965 * 2 1 4 4 C 1.32997 * 120.00219 * 118.92642 * 3 2 1 5 5 C 1.50705 * 119.99819 * 356.81609 * 4 3 2 6 6 C 1.47100 * 120.00291 * 176.80957 * 4 3 2 7 7 O 1.21620 * 119.99621 * 7.50746 * 6 4 3 8 8 N 1.34773 * 120.00268 * 187.50081 * 6 4 3 9 9 C 1.47607 * 122.42733 * 4.92337 * 8 6 4 10 10 S 1.84334 * 102.51784 * 155.10923 * 9 8 6 11 11 C 1.84217 * 93.82660 * 33.71064 * 10 9 8 12 12 C 1.45504 * 122.43300 * 185.20371 * 8 6 4 13 13 H 1.09003 * 108.74653 * 60.27158 * 12 8 6 14 14 C 1.50695 * 108.75321 * 302.05370 * 12 8 6 15 15 O 1.21279 * 120.00311 * 335.94147 * 14 12 8 16 16 N 1.34778 * 119.99974 * 155.94312 * 14 12 8 17 17 C 1.46504 * 119.99894 * 3.68512 * 16 14 12 18 18 C 1.50694 * 109.47235 * 89.77840 * 17 16 14 19 19 H 1.08004 * 120.00050 * 5.11864 * 18 17 16 20 20 C 1.37879 * 119.99825 * 185.12646 * 18 17 16 21 21 N 1.31516 * 119.99650 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00111 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47292 * 90.00327 * 22 20 18 24 24 H 1.48501 * 109.47125 * 209.99900 * 22 20 18 25 25 H 1.48498 * 109.47080 * 329.99949 * 22 20 18 26 26 C 1.46498 * 120.00120 * 183.68832 * 16 14 12 27 27 C 1.52999 * 109.47386 * 94.45327 * 26 16 14 28 28 C 1.47202 * 109.46856 * 184.92038 * 27 26 16 29 29 N 9.76364 * 116.67060 * 329.93448 * 2 1 3 30 30 H 1.09000 * 109.46766 * 299.99879 * 1 2 3 31 31 H 1.08994 * 109.47175 * 59.99807 * 1 2 3 32 32 H 1.09000 * 109.46830 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47427 * 119.99545 * 2 1 3 34 34 H 1.08997 * 109.47666 * 240.00073 * 2 1 3 35 35 H 1.08007 * 120.00305 * 298.92759 * 3 2 1 36 36 H 1.09002 * 109.47112 * 92.40740 * 5 4 3 37 37 H 1.08995 * 109.46717 * 212.40722 * 5 4 3 38 38 H 1.08999 * 109.46705 * 332.40886 * 5 4 3 39 39 H 1.08999 * 110.77220 * 273.47216 * 9 8 6 40 40 H 1.08993 * 110.77563 * 36.89737 * 9 8 6 41 41 H 1.08996 * 111.05324 * 209.56992 * 11 10 9 42 42 H 1.09004 * 111.08354 * 85.61226 * 11 10 9 43 43 H 1.08997 * 109.46991 * 209.78045 * 17 16 14 44 44 H 1.09002 * 109.46828 * 329.77471 * 17 16 14 45 45 H 0.97005 * 119.99746 * 179.97438 * 21 20 18 46 46 H 1.09006 * 109.46623 * 214.45334 * 26 16 14 47 47 H 1.08997 * 109.46777 * 334.44913 * 26 16 14 48 48 H 1.08996 * 109.46978 * 304.91984 * 27 26 16 49 49 H 1.09001 * 109.47288 * 64.92528 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.7792 1.8622 1.0081 5 6 3.0636 0.9643 2.1846 6 6 3.3279 3.2266 0.9747 7 8 2.9895 3.9967 0.0963 8 7 4.2055 3.6233 1.9175 9 6 4.7339 2.7038 2.9441 10 16 6.3397 3.4885 3.3950 11 6 5.7132 5.2028 3.1452 12 6 4.6962 4.9906 2.0008 13 1 3.8490 5.6578 2.1596 14 6 5.3554 5.3492 0.6940 15 8 5.7962 4.4758 -0.0227 16 7 5.4553 6.6407 0.3217 17 6 4.9962 7.7005 1.2231 18 6 6.1323 8.1273 2.1164 19 1 7.1199 7.7163 1.9677 20 6 5.9109 9.0424 3.1237 21 7 6.9023 9.4145 3.9036 22 14 4.2028 9.7537 3.3805 23 1 3.4480 8.8980 4.3310 24 1 4.3165 11.1270 3.9340 25 1 3.4860 9.8015 2.0809 26 6 6.0228 6.9848 -0.9843 27 6 4.8940 7.1453 -2.0046 28 6 5.4689 7.3743 -3.3402 29 7 5.9125 7.5509 -4.3710 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8935 -0.5138 -0.8899 35 1 1.7858 2.0808 -0.8186 36 1 3.9979 0.4289 2.0156 37 1 3.1483 1.5665 3.0891 38 1 2.2501 0.2479 2.2998 39 1 4.0667 2.6610 3.8050 40 1 4.8932 1.7094 2.5272 41 1 6.5162 5.8720 2.8363 42 1 5.2201 5.5749 4.0433 43 1 4.6547 8.5535 0.6368 44 1 4.1742 7.3271 1.8339 45 1 6.7466 10.0586 4.6120 46 1 6.5764 7.9204 -0.9047 47 1 6.6956 6.1910 -1.3086 48 1 4.2873 6.2400 -2.0206 49 1 4.2711 7.9955 -1.7266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096401053.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:11 Heat of formation + Delta-G solvation = -8.544950 kcal Electronic energy + Delta-G solvation = -32044.364442 eV Core-core repulsion = 27906.073231 eV Total energy + Delta-G solvation = -4138.291211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.92754 -40.38203 -38.08395 -37.31339 -37.16178 -36.83272 -34.70149 -33.75496 -32.59876 -31.27464 -29.66021 -29.19527 -27.41301 -26.29843 -25.33874 -24.53778 -23.67417 -21.79138 -19.98571 -19.50814 -19.09497 -18.83449 -18.43310 -18.23190 -17.68327 -17.03964 -16.62293 -16.42602 -16.26232 -15.89728 -15.71478 -15.31705 -15.03756 -14.93498 -14.76649 -14.66396 -14.56280 -14.44664 -13.95285 -13.91994 -13.76762 -13.65227 -13.59289 -13.42881 -13.36061 -13.05042 -13.03918 -12.96322 -12.66325 -12.42453 -12.19256 -12.15208 -12.06864 -11.88927 -11.63265 -11.52933 -11.45674 -11.06095 -10.78700 -10.69384 -10.12268 -9.69328 -9.51395 -8.87876 -8.22443 -6.29155 0.34931 0.65002 1.01710 1.41627 1.45103 1.50762 1.56942 1.62485 1.70760 1.72470 2.12721 2.29427 2.40263 3.05722 3.11920 3.20383 3.49724 3.53667 3.89870 3.95032 4.02926 4.04172 4.07931 4.15035 4.19811 4.34680 4.42408 4.47477 4.48135 4.54924 4.68495 4.70416 4.79004 4.79083 4.84395 4.88480 4.97968 5.05342 5.06362 5.12031 5.18854 5.37048 5.47766 5.54636 5.60622 5.65357 6.13762 6.20573 6.47049 6.54910 6.76373 6.98943 7.23305 7.37172 8.92395 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.007909 B = 0.003904 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.391922 B = 7170.246306 C = 8986.713177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.061 4.061 4 C -0.195 4.195 5 C -0.136 4.136 6 C 0.561 3.439 7 O -0.567 6.567 8 N -0.597 5.597 9 C 0.156 3.844 10 S -0.320 6.320 11 C -0.039 4.039 12 C 0.122 3.878 13 H 0.112 0.888 14 C 0.521 3.479 15 O -0.567 6.567 16 N -0.591 5.591 17 C 0.210 3.790 18 C -0.533 4.533 19 H 0.039 0.961 20 C 0.033 3.967 21 N -0.935 5.935 22 Si 0.923 3.077 23 H -0.259 1.259 24 H -0.293 1.293 25 H -0.237 1.237 26 C 0.125 3.875 27 C -0.029 4.029 28 C 0.244 3.756 29 N -0.485 5.485 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.267 0.733 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 -17.507 1.099 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.081 4.081 4 C -0.198 4.198 5 C -0.192 4.192 6 C 0.353 3.647 7 O -0.446 6.446 8 N -0.332 5.332 9 C -0.075 4.075 10 S -0.093 6.093 11 C -0.188 4.188 12 C 0.013 3.987 13 H 0.129 0.871 14 C 0.308 3.692 15 O -0.447 6.447 16 N -0.322 5.322 17 C 0.088 3.912 18 C -0.571 4.571 19 H 0.057 0.943 20 C -0.168 4.168 21 N -0.574 5.574 22 Si 0.746 3.254 23 H -0.184 1.184 24 H -0.220 1.220 25 H -0.160 1.160 26 C 0.000 4.000 27 C -0.070 4.070 28 C -0.074 4.074 29 N -0.163 5.163 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.088 0.912 48 H 0.128 0.872 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.877 -17.634 -0.781 21.850 hybrid contribution -1.010 1.669 0.272 1.970 sum -13.887 -15.965 -0.509 21.166 Atomic orbital electron populations 1.21702 0.93833 1.02869 1.02050 1.20976 0.97031 0.91262 1.04792 1.23746 0.91027 0.98064 0.95286 1.21338 1.04291 0.92903 1.01252 1.21611 1.03816 0.98879 0.94853 1.18983 0.77448 0.89005 0.79249 1.90747 1.61521 1.56536 1.35841 1.48223 1.44547 1.08607 1.31776 1.25705 0.91085 0.96795 0.93869 1.88541 1.23347 1.07062 1.90391 1.24489 1.00402 0.94543 0.99360 1.21150 0.98418 0.85451 0.93711 0.87058 1.20665 0.78676 0.82456 0.87416 1.90599 1.49887 1.48762 1.55412 1.47789 1.61321 1.05935 1.17138 1.19834 0.94753 0.87016 0.89578 1.21349 0.95779 1.25249 1.14728 0.94302 1.25576 1.00285 0.96009 0.94895 1.70036 1.33984 1.33372 1.20003 0.86083 0.80605 0.78094 0.80630 1.18351 1.21982 1.16011 1.21164 0.94622 1.02478 0.81759 1.19677 0.98617 1.06557 0.82169 1.29185 0.92343 0.91375 0.94458 1.81193 1.10257 1.11202 1.13677 0.92575 0.93064 0.90569 0.88345 0.89312 0.87875 0.89538 0.89269 0.88226 0.84368 0.83440 0.86448 0.86022 0.92436 0.93754 0.92368 0.88881 0.91179 0.87239 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 71.98 0.71 -0.72 16 2 C -0.10 -1.15 6.11 29.85 0.18 -0.96 16 3 C -0.06 -1.16 9.09 24.52 0.22 -0.93 16 4 C -0.19 -4.01 5.94 -18.70 -0.11 -4.12 16 5 C -0.14 -1.53 7.34 71.24 0.52 -1.01 16 6 C 0.56 16.83 7.02 86.57 0.61 17.43 16 7 O -0.57 -21.11 15.13 2.89 0.04 -21.07 16 8 N -0.60 -17.10 2.70 -811.29 -2.19 -19.29 16 9 C 0.16 3.31 5.54 127.56 0.71 4.02 16 10 S -0.32 -9.63 23.44 -56.49 -1.32 -10.96 16 11 C -0.04 -1.33 6.33 72.51 0.46 -0.87 16 12 C 0.12 4.07 2.24 44.96 0.10 4.17 16 13 H 0.11 3.60 6.25 -2.39 -0.01 3.58 16 14 C 0.52 20.19 5.39 87.66 0.47 20.66 16 15 O -0.57 -24.93 15.31 3.96 0.06 -24.87 16 16 N -0.59 -21.72 2.46 -826.16 -2.03 -23.75 16 17 C 0.21 7.85 3.96 85.63 0.34 8.19 16 18 C -0.53 -24.72 7.74 25.60 0.20 -24.53 16 19 H 0.04 2.12 7.67 -2.91 -0.02 2.10 16 20 C 0.03 1.57 5.47 84.65 0.46 2.04 16 21 N -0.93 -50.91 13.96 21.45 0.30 -50.61 16 22 Si 0.92 35.74 27.37 68.60 1.88 37.62 16 23 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 24 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.24 -8.16 6.69 99.48 0.67 -7.49 16 26 C 0.12 4.07 5.44 86.38 0.47 4.54 16 27 C -0.03 -0.77 6.03 28.79 0.17 -0.59 16 28 C 0.24 7.18 15.43 89.44 1.38 8.56 16 29 N -0.49 -16.59 18.54 20.01 0.37 -16.21 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.74 5.40 -2.39 -0.01 0.73 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 2.41 7.51 -2.91 -0.02 2.39 16 36 H 0.09 0.83 6.88 -2.39 -0.02 0.82 16 37 H 0.09 0.87 4.67 -2.39 -0.01 0.86 16 38 H 0.10 0.68 6.02 -2.39 -0.01 0.67 16 39 H 0.14 1.92 6.82 -2.39 -0.02 1.91 16 40 H 0.15 2.51 4.95 -2.39 -0.01 2.50 16 41 H 0.12 4.88 5.56 -2.39 -0.01 4.86 16 42 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.06 1.98 7.48 -2.39 -0.02 1.97 16 44 H 0.04 1.57 5.01 -2.39 -0.01 1.56 16 45 H 0.27 13.79 8.31 -92.70 -0.77 13.02 16 46 H 0.09 2.96 8.11 -2.38 -0.02 2.94 16 47 H 0.07 2.51 7.25 -2.39 -0.02 2.49 16 48 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 49 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -71.23 403.64 4.96 -66.27 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.95 Total: 27.01 kcal Atomic # 6 Polarization: 28.96 SS G_CDS: 6.90 Total: 35.85 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -3.55 Total: -109.86 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: 0.10 Total: -45.94 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 1.88 Total: 37.62 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.32 Total: -10.96 kcal Total: -71.23 4.96 -66.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096401053.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.724 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds