Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34779 * 119.99760 * 2 1 4 4 O 1.21719 * 119.99849 * 179.97438 * 3 2 1 5 5 C 1.46252 * 120.00123 * 0.02562 * 3 2 1 6 6 C 1.35023 * 119.99736 * 186.97587 * 5 3 2 7 7 C 1.46953 * 120.00151 * 10.71380 * 6 5 3 8 8 C 1.40031 * 120.10020 * 226.44906 * 7 6 5 9 9 C 1.37599 * 119.89763 * 180.02562 * 8 7 6 10 10 C 1.39169 * 120.10230 * 359.97438 * 9 8 7 11 11 O 1.35563 * 119.89923 * 179.97438 * 10 9 8 12 12 C 1.34788 * 117.00221 * 5.77125 * 11 10 9 13 13 H 1.07999 * 119.99583 * 354.93192 * 12 11 10 14 14 C 1.38710 * 120.00374 * 174.65673 * 12 11 10 15 15 N 1.31516 * 120.00127 * 0.27884 * 14 12 11 16 16 Si 1.86804 * 120.00209 * 180.27481 * 14 12 11 17 17 H 1.48500 * 109.46889 * 89.99889 * 16 14 12 18 18 H 1.48495 * 109.47123 * 209.99910 * 16 14 12 19 19 H 1.48500 * 109.46954 * 330.00170 * 16 14 12 20 20 C 1.39184 * 120.20299 * 0.25731 * 10 9 8 21 21 C 1.37592 * 120.09909 * 359.48222 * 20 10 9 22 22 C 1.46493 * 120.00044 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.64330 * 180.43184 * 22 2 1 24 24 C 1.53879 * 109.64866 * 59.99454 * 22 2 1 25 25 C 1.55048 * 106.62603 * 192.96650 * 24 22 2 26 26 S 1.83284 * 102.56468 * 42.43538 * 25 24 22 27 27 O 1.42101 * 109.35226 * 90.18573 * 26 25 24 28 28 O 1.42105 * 109.35402 * 223.25295 * 26 25 24 29 29 C 1.54171 * 109.64876 * 300.72440 * 22 2 1 30 30 H 1.08990 * 109.47086 * 89.99683 * 1 2 3 31 31 H 1.08999 * 109.46875 * 210.00283 * 1 2 3 32 32 H 1.09003 * 109.47052 * 329.99567 * 1 2 3 33 33 H 1.08001 * 120.00202 * 6.98166 * 5 3 2 34 34 H 1.07999 * 119.99749 * 190.70582 * 6 5 3 35 35 H 1.08004 * 120.04757 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.94426 * 179.97438 * 9 8 7 37 37 H 0.96995 * 120.00115 * 180.02562 * 15 14 12 38 38 H 1.08004 * 119.94452 * 179.74446 * 20 10 9 39 39 H 1.08000 * 120.05164 * 180.23070 * 21 20 10 40 40 H 1.08991 * 110.02833 * 312.26317 * 24 22 2 41 41 H 1.09005 * 110.02353 * 73.67547 * 24 22 2 42 42 H 1.09000 * 110.78972 * 160.70550 * 25 24 22 43 43 H 1.08997 * 110.78893 * 284.16953 * 25 24 22 44 44 H 1.09001 * 110.31662 * 266.66753 * 29 22 2 45 45 H 1.09000 * 110.31698 * 28.85451 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3561 1.1673 0.0005 5 6 1.4076 2.4338 0.0006 6 6 2.0752 3.5988 -0.1415 7 6 3.4924 3.5910 -0.5301 8 6 4.4134 4.3917 0.1566 9 6 5.7393 4.3815 -0.2111 10 6 6.1656 3.5767 -1.2633 11 8 7.4728 3.5702 -1.6225 12 6 8.3240 4.2709 -0.8470 13 1 7.9439 4.8703 -0.0330 14 6 9.6884 4.2176 -1.0909 15 7 10.1513 3.4877 -2.0822 16 14 10.8687 5.1827 -0.0114 17 1 11.2923 4.3397 1.1355 18 1 12.0608 5.5722 -0.8064 19 1 10.1909 6.4031 0.4950 20 6 5.2531 2.7827 -1.9519 21 6 3.9262 2.7824 -1.5877 22 6 2.1975 -1.2687 -0.0006 23 1 3.2697 -1.0727 0.0073 24 6 1.8286 -2.0786 -1.2559 25 6 2.3649 -3.5157 -1.0301 26 16 1.9203 -3.8370 0.7188 27 8 0.6280 -4.4253 0.7757 28 8 3.0133 -4.4649 1.3749 29 6 1.8143 -2.0891 1.2472 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 0.3337 2.4373 0.1147 34 1 1.5676 4.5365 0.0304 35 1 4.0832 5.0170 0.9731 36 1 6.4501 4.9991 0.3178 37 1 11.1054 3.4502 -2.2525 38 1 5.5878 2.1628 -2.7705 39 1 3.2194 2.1633 -2.1202 40 1 0.7462 -2.0995 -1.3819 41 1 2.2988 -1.6386 -2.1354 42 1 1.8660 -4.2233 -1.6923 43 1 3.4456 -3.5514 -1.1673 44 1 2.5168 -1.8954 2.0579 45 1 0.7982 -1.8492 1.5605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096405149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -60.194752 kcal Electronic energy + Delta-G solvation = -30306.591355 eV Core-core repulsion = 25997.934595 eV Total energy + Delta-G solvation = -4308.656760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 6.69 seconds Orbital eigenvalues (eV) -40.30865 -38.92972 -37.55009 -37.34801 -36.39435 -36.22257 -34.14076 -33.07982 -32.15188 -30.21334 -30.14196 -28.12304 -27.33871 -25.71485 -25.27758 -23.45305 -21.88698 -21.50855 -20.33805 -19.22284 -18.73785 -17.96218 -17.76250 -17.25816 -16.89076 -16.65486 -16.09600 -15.77187 -15.34807 -14.74411 -14.60455 -14.53800 -14.35429 -14.28222 -13.85340 -13.57120 -13.49128 -13.32964 -13.02619 -12.87758 -12.71554 -12.61432 -12.50524 -12.47665 -12.41889 -12.33653 -12.20094 -11.73233 -11.56868 -11.37536 -11.11884 -11.02326 -10.74523 -10.71233 -10.67396 -10.44066 -9.59798 -9.48961 -9.22501 -8.91236 -8.74465 -8.01187 -6.93775 -6.49181 -4.05074 -0.36518 1.14819 2.09121 2.35254 2.59116 2.79946 3.11469 3.13145 3.16951 3.18014 3.43668 3.64569 3.91071 3.94423 4.12495 4.23766 4.39069 4.53554 4.62898 4.71029 4.79960 4.96769 5.00454 5.07406 5.18064 5.19465 5.25650 5.30339 5.38720 5.49353 5.53201 5.57400 5.67895 5.77974 6.11435 6.20611 6.28138 6.39144 6.51612 6.72364 6.97128 7.07639 7.24000 7.32254 7.39616 7.45528 7.86281 7.97267 8.30065 8.96530 9.67522 10.68577 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.002326 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.703024 B =12033.014434 C =13580.996232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.613 5.613 3 C 0.544 3.456 4 O -0.504 6.504 5 C -0.269 4.269 6 C 0.033 3.967 7 C -0.190 4.190 8 C -0.041 4.041 9 C -0.248 4.248 10 C 0.171 3.829 11 O -0.172 6.172 12 C -0.390 4.390 13 H 0.094 0.906 14 C 0.040 3.960 15 N -0.859 5.859 16 Si 0.942 3.058 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.201 4.201 21 C 0.005 3.995 22 C 0.149 3.851 23 H 0.126 0.874 24 C -0.131 4.131 25 C -0.584 4.584 26 S 2.391 3.609 27 O -0.937 6.937 28 O -0.934 6.934 29 C -0.612 4.612 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.271 0.729 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.992 -8.189 3.143 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.348 5.348 3 C 0.336 3.664 4 O -0.379 6.379 5 C -0.290 4.290 6 C 0.013 3.987 7 C -0.191 4.191 8 C -0.059 4.059 9 C -0.268 4.268 10 C 0.116 3.884 11 O -0.074 6.074 12 C -0.466 4.466 13 H 0.111 0.889 14 C -0.165 4.165 15 N -0.493 5.493 16 Si 0.766 3.234 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.220 4.220 21 C -0.013 4.013 22 C 0.044 3.956 23 H 0.144 0.856 24 C -0.170 4.170 25 C -0.714 4.714 26 S 2.574 3.426 27 O -0.934 6.934 28 O -0.931 6.931 29 C -0.741 4.741 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.085 -9.187 3.359 23.244 hybrid contribution 0.450 1.126 0.272 1.242 sum -20.635 -8.061 3.631 22.449 Atomic orbital electron populations 1.21862 0.79875 1.03341 1.02143 1.47742 1.06519 1.04828 1.75733 1.18591 0.87684 0.83898 0.76230 1.91007 1.12958 1.86336 1.47636 1.22668 0.99472 0.92113 1.14761 1.22394 0.93356 0.96556 0.86377 1.18288 0.92219 1.05813 1.02744 1.20728 0.92657 0.95682 0.96877 1.20961 0.96273 1.06512 1.03009 1.19522 0.85530 0.91897 0.91492 1.83904 1.12331 1.62946 1.48224 1.21395 0.86719 1.25889 1.12642 0.88875 1.25331 0.96585 0.97353 0.97259 1.70020 1.14634 1.37002 1.27678 0.85695 0.79277 0.79305 0.79074 1.19792 1.20204 1.19128 1.20001 0.92311 1.04938 1.04768 1.20405 0.94001 0.92850 0.94083 1.21311 1.00649 0.84126 0.89550 0.85633 1.22568 1.02903 0.91263 1.00285 1.30584 1.12134 1.05151 1.23561 1.08999 0.75638 0.78316 0.79669 1.93621 1.39443 1.74376 1.85986 1.93641 1.54153 1.72773 1.72553 1.31008 1.12178 1.22825 1.08137 0.92262 0.91241 0.90188 0.85728 0.85948 0.87615 0.85625 0.91903 0.86829 0.88172 0.89206 0.87666 0.84097 0.83847 0.83683 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 9.00 59.85 0.54 0.94 16 2 N -0.61 -5.77 2.78 -174.41 -0.49 -6.26 16 3 C 0.54 7.18 6.74 -13.04 -0.09 7.09 16 4 O -0.50 -8.96 11.66 5.17 0.06 -8.90 16 5 C -0.27 -3.03 9.15 -37.51 -0.34 -3.37 16 6 C 0.03 0.42 9.79 -37.20 -0.36 0.06 16 7 C -0.19 -3.31 4.43 -105.03 -0.47 -3.77 16 8 C -0.04 -0.77 9.78 -39.14 -0.38 -1.15 16 9 C -0.25 -5.51 9.14 -39.47 -0.36 -5.87 16 10 C 0.17 4.22 6.66 -38.88 -0.26 3.96 16 11 O -0.17 -4.96 9.74 0.74 0.01 -4.95 16 12 C -0.39 -10.96 9.48 30.91 0.29 -10.67 16 13 H 0.09 2.42 5.18 -52.49 -0.27 2.15 16 14 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 16 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 20 C -0.20 -4.42 9.97 -39.47 -0.39 -4.81 16 21 C 0.01 0.10 6.67 -39.15 -0.26 -0.16 16 22 C 0.15 1.29 2.95 -66.86 -0.20 1.09 16 23 H 0.13 1.36 6.91 -51.93 -0.36 1.00 16 24 C -0.13 -0.81 5.93 -25.19 -0.15 -0.96 16 25 C -0.58 -3.19 7.31 38.24 0.28 -2.91 16 26 S 2.39 18.29 6.10 -107.50 -0.66 17.63 16 27 O -0.94 -9.71 18.15 -57.73 -1.05 -10.76 16 28 O -0.93 -11.06 18.15 -57.73 -1.05 -12.11 16 29 C -0.61 -4.21 6.80 37.77 0.26 -3.96 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.28 6.31 -51.93 -0.33 -0.05 16 32 H 0.08 0.38 6.02 -51.93 -0.31 0.07 16 33 H 0.13 0.95 6.14 -52.49 -0.32 0.63 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.13 2.77 5.62 -52.49 -0.29 2.48 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 39 H 0.10 1.68 7.27 -52.49 -0.38 1.30 16 40 H 0.09 0.40 7.37 -51.93 -0.38 0.02 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.14 0.75 6.16 -51.93 -0.32 0.43 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -38.86 380.58 -9.18 -48.04 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.49 Total: 4.01 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -1.99 Total: -23.52 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.27 Total: -30.68 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -2.03 Total: -36.72 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 18.29 SS G_CDS: -0.66 Total: 17.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.86 -9.18 -48.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096405149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.158 kcal (2) G-P(sol) polarization free energy of solvation -38.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.69 seconds