Wall clock time and date at job start Tue Mar 31 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34779 * 119.99760 * 2 1 4 4 O 1.21719 * 119.99849 * 179.97438 * 3 2 1 5 5 C 1.46252 * 120.00123 * 0.02562 * 3 2 1 6 6 C 1.35023 * 119.99736 * 186.97587 * 5 3 2 7 7 C 1.46953 * 120.00151 * 10.71380 * 6 5 3 8 8 C 1.40031 * 120.10020 * 226.44906 * 7 6 5 9 9 C 1.37599 * 119.89763 * 180.02562 * 8 7 6 10 10 C 1.39169 * 120.10230 * 359.97438 * 9 8 7 11 11 O 1.35563 * 119.89923 * 179.97438 * 10 9 8 12 12 C 1.34788 * 117.00221 * 5.77125 * 11 10 9 13 13 H 1.07999 * 119.99583 * 354.93192 * 12 11 10 14 14 C 1.38710 * 120.00374 * 174.65673 * 12 11 10 15 15 N 1.31516 * 120.00127 * 0.27884 * 14 12 11 16 16 Si 1.86804 * 120.00209 * 180.27481 * 14 12 11 17 17 H 1.48500 * 109.46889 * 89.99889 * 16 14 12 18 18 H 1.48495 * 109.47123 * 209.99910 * 16 14 12 19 19 H 1.48500 * 109.46954 * 330.00170 * 16 14 12 20 20 C 1.39184 * 120.20299 * 0.25731 * 10 9 8 21 21 C 1.37592 * 120.09909 * 359.48222 * 20 10 9 22 22 C 1.46493 * 120.00044 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.64330 * 180.43184 * 22 2 1 24 24 C 1.53879 * 109.64866 * 59.99454 * 22 2 1 25 25 C 1.55048 * 106.62603 * 192.96650 * 24 22 2 26 26 S 1.83284 * 102.56468 * 42.43538 * 25 24 22 27 27 O 1.42101 * 109.35226 * 90.18573 * 26 25 24 28 28 O 1.42105 * 109.35402 * 223.25295 * 26 25 24 29 29 C 1.54171 * 109.64876 * 300.72440 * 22 2 1 30 30 H 1.08990 * 109.47086 * 89.99683 * 1 2 3 31 31 H 1.08999 * 109.46875 * 210.00283 * 1 2 3 32 32 H 1.09003 * 109.47052 * 329.99567 * 1 2 3 33 33 H 1.08001 * 120.00202 * 6.98166 * 5 3 2 34 34 H 1.07999 * 119.99749 * 190.70582 * 6 5 3 35 35 H 1.08004 * 120.04757 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.94426 * 179.97438 * 9 8 7 37 37 H 0.96995 * 120.00115 * 180.02562 * 15 14 12 38 38 H 1.08004 * 119.94452 * 179.74446 * 20 10 9 39 39 H 1.08000 * 120.05164 * 180.23070 * 21 20 10 40 40 H 1.08991 * 110.02833 * 312.26317 * 24 22 2 41 41 H 1.09005 * 110.02353 * 73.67547 * 24 22 2 42 42 H 1.09000 * 110.78972 * 160.70550 * 25 24 22 43 43 H 1.08997 * 110.78893 * 284.16953 * 25 24 22 44 44 H 1.09001 * 110.31662 * 266.66753 * 29 22 2 45 45 H 1.09000 * 110.31698 * 28.85451 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3561 1.1673 0.0005 5 6 1.4076 2.4338 0.0006 6 6 2.0752 3.5988 -0.1415 7 6 3.4924 3.5910 -0.5301 8 6 4.4134 4.3917 0.1566 9 6 5.7393 4.3815 -0.2111 10 6 6.1656 3.5767 -1.2633 11 8 7.4728 3.5702 -1.6225 12 6 8.3240 4.2709 -0.8470 13 1 7.9439 4.8703 -0.0330 14 6 9.6884 4.2176 -1.0909 15 7 10.1513 3.4877 -2.0822 16 14 10.8687 5.1827 -0.0114 17 1 11.2923 4.3397 1.1355 18 1 12.0608 5.5722 -0.8064 19 1 10.1909 6.4031 0.4950 20 6 5.2531 2.7827 -1.9519 21 6 3.9262 2.7824 -1.5877 22 6 2.1975 -1.2687 -0.0006 23 1 3.2697 -1.0727 0.0073 24 6 1.8286 -2.0786 -1.2559 25 6 2.3649 -3.5157 -1.0301 26 16 1.9203 -3.8370 0.7188 27 8 0.6280 -4.4253 0.7757 28 8 3.0133 -4.4649 1.3749 29 6 1.8143 -2.0891 1.2472 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 0.3337 2.4373 0.1147 34 1 1.5676 4.5365 0.0304 35 1 4.0832 5.0170 0.9731 36 1 6.4501 4.9991 0.3178 37 1 11.1054 3.4502 -2.2525 38 1 5.5878 2.1628 -2.7705 39 1 3.2194 2.1633 -2.1202 40 1 0.7462 -2.0995 -1.3819 41 1 2.2988 -1.6386 -2.1354 42 1 1.8660 -4.2233 -1.6923 43 1 3.4456 -3.5514 -1.1673 44 1 2.5168 -1.8954 2.0579 45 1 0.7982 -1.8492 1.5605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096405149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:00 Heat of formation + Delta-G solvation = -89.750897 kcal Electronic energy + Delta-G solvation = -30307.873006 eV Core-core repulsion = 25997.934595 eV Total energy + Delta-G solvation = -4309.938411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -41.31819 -40.56236 -38.68287 -38.15335 -37.62912 -37.11632 -34.93661 -34.53549 -33.81532 -31.81900 -30.82641 -29.54222 -27.90377 -27.45452 -26.23565 -24.47719 -23.50780 -22.74317 -21.32663 -19.98913 -19.87147 -19.51537 -18.86144 -18.52236 -17.88562 -17.47044 -16.90809 -16.62467 -16.39136 -16.33520 -16.06003 -15.68722 -15.53121 -15.13105 -15.10064 -14.98848 -14.61807 -14.45990 -14.33941 -13.85148 -13.78767 -13.58062 -13.46162 -13.33851 -13.24862 -13.19838 -13.13960 -12.92605 -12.89330 -12.60268 -12.35481 -12.19526 -12.14214 -12.07967 -11.80427 -11.35719 -11.23625 -10.93352 -10.63003 -10.36769 -9.80751 -9.49161 -8.56836 -8.48829 -6.15816 -0.99587 0.01437 0.71651 1.09055 1.33070 1.44589 1.48318 1.51119 2.07257 2.16593 2.40509 2.59791 2.86672 3.01479 3.20499 3.27785 3.53583 3.56788 3.64434 3.82308 3.93338 4.00304 4.00911 4.13760 4.17163 4.33522 4.46693 4.54631 4.57057 4.59879 4.73333 4.77286 4.80287 4.91636 4.99180 5.04449 5.06215 5.10489 5.24115 5.29299 5.41362 5.56596 5.68558 5.73413 5.83250 6.02538 6.25606 6.44857 6.95511 7.33346 7.77791 8.74424 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.002326 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.703024 B =12033.014434 C =13580.996232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.603 5.603 3 C 0.528 3.472 4 O -0.563 6.563 5 C -0.230 4.230 6 C 0.006 3.994 7 C -0.156 4.156 8 C -0.050 4.050 9 C -0.258 4.258 10 C 0.125 3.875 11 O -0.231 6.231 12 C -0.414 4.414 13 H 0.102 0.898 14 C -0.024 4.024 15 N -0.921 5.921 16 Si 1.020 2.980 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.251 1.251 20 C -0.218 4.218 21 C 0.009 3.991 22 C 0.139 3.861 23 H 0.094 0.906 24 C -0.127 4.127 25 C -0.567 4.567 26 S 2.403 3.597 27 O -0.962 6.962 28 O -0.984 6.984 29 C -0.600 4.600 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.273 0.727 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.167 0.833 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.195 -7.589 4.441 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.336 5.336 3 C 0.320 3.680 4 O -0.443 6.443 5 C -0.251 4.251 6 C -0.013 4.013 7 C -0.157 4.157 8 C -0.068 4.068 9 C -0.277 4.277 10 C 0.074 3.926 11 O -0.138 6.138 12 C -0.490 4.490 13 H 0.119 0.881 14 C -0.221 4.221 15 N -0.559 5.559 16 Si 0.839 3.161 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.174 1.174 20 C -0.237 4.237 21 C -0.009 4.009 22 C 0.033 3.967 23 H 0.113 0.887 24 C -0.167 4.167 25 C -0.699 4.699 26 S 2.590 3.410 27 O -0.959 6.959 28 O -0.981 6.981 29 C -0.730 4.730 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.194 0.806 34 H 0.186 0.814 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -26.418 -8.633 4.693 28.186 hybrid contribution 1.451 0.741 -0.089 1.631 sum -24.967 -7.892 4.605 26.587 Atomic orbital electron populations 1.22294 0.76900 1.05349 1.04164 1.47789 1.08282 1.03942 1.73560 1.19171 0.87275 0.85679 0.75848 1.91014 1.15557 1.87329 1.50436 1.23165 1.01613 0.90198 1.10079 1.22609 0.90486 0.99348 0.88872 1.18882 0.94967 1.01931 0.99921 1.21159 0.91193 0.96569 0.97898 1.21088 0.98043 1.06148 1.02431 1.20027 0.84883 0.94041 0.93618 1.83871 1.14065 1.65571 1.50253 1.21860 0.87525 1.26434 1.13223 0.88118 1.26641 0.98145 0.98514 0.98793 1.70170 1.15041 1.40145 1.30519 0.84577 0.76532 0.78061 0.76960 1.18984 1.19321 1.17431 1.20200 0.93774 1.04972 1.04750 1.20667 0.92745 0.92972 0.94523 1.21387 0.99249 0.84607 0.91471 0.88736 1.22589 1.04668 0.90735 0.98680 1.30497 1.12754 1.05485 1.21194 1.08467 0.74138 0.78113 0.80289 1.93582 1.40252 1.75338 1.86765 1.93579 1.55566 1.74438 1.74514 1.30885 1.13453 1.21312 1.07374 0.90190 0.89251 0.88411 0.80569 0.81425 0.83702 0.86475 0.91776 0.87927 0.85878 0.86373 0.87917 0.81476 0.83562 0.84127 0.81705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.28 9.00 127.77 1.15 1.43 16 2 N -0.60 -8.93 2.78 -823.92 -2.29 -11.22 16 3 C 0.53 12.06 6.74 86.32 0.58 12.64 16 4 O -0.56 -19.45 11.66 -4.41 -0.05 -19.51 16 5 C -0.23 -3.78 9.15 23.61 0.22 -3.56 16 6 C 0.01 0.12 9.79 23.81 0.23 0.36 16 7 C -0.16 -5.07 4.43 -20.13 -0.09 -5.16 16 8 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 9 C -0.26 -11.92 9.14 22.34 0.20 -11.71 16 10 C 0.13 6.66 6.66 22.72 0.15 6.81 16 11 O -0.23 -14.62 9.74 -20.26 -0.20 -14.82 16 12 C -0.41 -25.09 9.48 67.93 0.64 -24.45 16 13 H 0.10 5.61 5.18 -2.91 -0.02 5.60 16 14 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 15 N -0.92 -58.07 13.67 21.62 0.30 -57.77 16 16 Si 1.02 44.05 29.55 68.60 2.03 46.07 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 20 C -0.22 -10.17 9.97 22.34 0.22 -9.95 16 21 C 0.01 0.34 6.67 22.55 0.15 0.49 16 22 C 0.14 2.09 2.95 45.69 0.13 2.23 16 23 H 0.09 2.07 6.91 -2.39 -0.02 2.06 16 24 C -0.13 -1.20 5.93 31.59 0.19 -1.01 16 25 C -0.57 -4.95 7.31 72.68 0.53 -4.42 16 26 S 2.40 33.93 6.10 -56.49 -0.34 33.59 16 27 O -0.96 -18.19 18.15 -127.47 -2.31 -20.50 16 28 O -0.98 -23.72 18.15 -127.47 -2.31 -26.04 16 29 C -0.60 -7.04 6.80 72.38 0.49 -6.54 16 30 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 0.17 6.31 -2.39 -0.02 0.16 16 32 H 0.10 0.20 6.02 -2.39 -0.01 0.19 16 33 H 0.18 1.16 6.14 -2.91 -0.02 1.14 16 34 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.12 5.47 5.62 -2.91 -0.02 5.45 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.12 3.92 7.27 -2.91 -0.02 3.90 16 40 H 0.12 0.48 7.37 -2.39 -0.02 0.46 16 41 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.17 1.11 6.16 -2.39 -0.01 1.10 16 Total: -1.00 -95.91 380.58 1.34 -94.58 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.03 Total: 20.98 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 5.50 Total: -45.36 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -2.00 Total: -68.99 kcal Atomic # 8 Polarization: -75.99 SS G_CDS: -4.88 Total: -80.87 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 33.93 SS G_CDS: -0.34 Total: 33.59 kcal Total: -95.91 1.34 -94.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096405149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.825 kcal (2) G-P(sol) polarization free energy of solvation -95.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds