Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99913 * 2 1 4 4 O 1.21727 * 120.00154 * 179.97438 * 3 2 1 5 5 C 1.46257 * 120.00018 * 0.02562 * 3 2 1 6 6 C 1.35026 * 119.99603 * 173.17570 * 5 3 2 7 7 C 1.46956 * 120.00228 * 348.50429 * 6 5 3 8 8 C 1.40025 * 120.10246 * 316.62054 * 7 6 5 9 9 C 1.37599 * 119.89501 * 179.71629 * 8 7 6 10 10 C 1.39177 * 120.10486 * 0.57678 * 9 8 7 11 11 O 1.35572 * 119.90074 * 179.69538 * 10 9 8 12 12 C 1.34784 * 116.99776 * 174.34930 * 11 10 9 13 13 H 1.07997 * 120.00058 * 5.05469 * 12 11 10 14 14 C 1.38717 * 119.99695 * 185.06449 * 12 11 10 15 15 N 1.31505 * 120.00049 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99888 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46991 * 119.99696 * 16 14 12 19 19 H 1.48495 * 109.46971 * 239.99442 * 16 14 12 20 20 C 1.39175 * 120.19992 * 359.67564 * 10 9 8 21 21 C 1.37604 * 120.10309 * 0.04281 * 20 10 9 22 22 C 1.46497 * 120.00136 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.64683 * 180.42439 * 22 2 1 24 24 C 1.53875 * 109.64602 * 300.72796 * 22 2 1 25 25 C 1.55048 * 106.62564 * 167.03369 * 24 22 2 26 26 S 1.83284 * 102.56523 * 317.56040 * 25 24 22 27 27 O 1.42102 * 109.35728 * 269.81732 * 26 25 24 28 28 O 1.42106 * 109.35178 * 136.61211 * 26 25 24 29 29 C 1.54169 * 109.64555 * 59.99667 * 22 2 1 30 30 H 1.09003 * 109.46909 * 89.99935 * 1 2 3 31 31 H 1.08994 * 109.47000 * 209.99409 * 1 2 3 32 32 H 1.08997 * 109.47212 * 329.99885 * 1 2 3 33 33 H 1.07995 * 119.99853 * 352.89636 * 5 3 2 34 34 H 1.08003 * 119.99469 * 168.50913 * 6 5 3 35 35 H 1.08001 * 120.04921 * 359.97265 * 8 7 6 36 36 H 1.08002 * 119.94617 * 180.27467 * 9 8 7 37 37 H 0.97007 * 120.00381 * 180.02562 * 15 14 12 38 38 H 1.07995 * 119.94931 * 180.02562 * 20 10 9 39 39 H 1.07999 * 120.04782 * 179.97438 * 21 20 10 40 40 H 1.09007 * 110.02389 * 286.32233 * 24 22 2 41 41 H 1.08996 * 110.03266 * 47.73756 * 24 22 2 42 42 H 1.09004 * 110.78941 * 199.29714 * 25 24 22 43 43 H 1.09000 * 110.95711 * 75.90885 * 25 24 22 44 44 H 1.08996 * 110.32270 * 331.14613 * 29 22 2 45 45 H 1.09003 * 110.31761 * 93.34080 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3561 1.1672 0.0005 5 6 1.4076 2.4338 0.0006 6 6 2.0756 3.5989 0.1395 7 6 3.4894 3.5921 0.5405 8 6 3.9244 2.7437 1.5660 9 6 5.2502 2.7365 1.9341 10 6 6.1562 3.5793 1.2970 11 8 7.4604 3.5733 1.6672 12 6 8.3075 4.3242 0.9356 13 1 7.9256 4.9583 0.1493 14 6 9.6700 4.2824 1.1927 15 7 10.1350 3.5104 2.1504 16 14 10.8442 5.3225 0.1784 17 1 10.0756 6.0965 -0.8292 18 1 11.5737 6.2585 1.0712 19 1 11.8169 4.4390 -0.5132 20 6 5.7274 4.4281 0.2808 21 6 4.4045 4.4380 -0.0980 22 6 2.1975 -1.2687 -0.0006 23 1 3.2697 -1.0728 0.0071 24 6 1.8149 -2.0875 1.2448 25 6 2.3537 -3.5231 1.0145 26 16 1.9281 -3.8318 -0.7413 27 8 0.6366 -4.4196 -0.8166 28 8 3.0294 -4.4522 -1.3907 29 6 1.8279 -2.0800 -1.2583 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 0.3338 2.4374 -0.1147 34 1 1.5709 4.5360 -0.0440 35 1 3.2211 2.0930 2.0645 36 1 5.5875 2.0792 2.7220 37 1 11.0878 3.4814 2.3305 38 1 6.4339 5.0801 -0.2111 39 1 4.0727 5.0973 -0.8864 40 1 2.2755 -1.6539 2.1326 41 1 0.7312 -2.1093 1.3588 42 1 1.8476 -4.2354 1.6662 43 1 3.4326 -3.5632 1.1640 44 1 0.8154 -1.8379 -1.5809 45 1 2.5392 -1.8807 -2.0599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096405150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -59.463337 kcal Electronic energy + Delta-G solvation = -30306.194276 eV Core-core repulsion = 25997.569233 eV Total energy + Delta-G solvation = -4308.625044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -40.32250 -38.93488 -37.56316 -37.35438 -36.38808 -36.21708 -34.12977 -33.07564 -32.15947 -30.21970 -30.14321 -28.12409 -27.28455 -25.74719 -25.30768 -23.45608 -21.89893 -21.49996 -20.33220 -19.22129 -18.73557 -17.96903 -17.74436 -17.24684 -16.89965 -16.62746 -16.08820 -15.81155 -15.35568 -14.76678 -14.61327 -14.52051 -14.35538 -14.26499 -13.87827 -13.56721 -13.46513 -13.30298 -13.04954 -12.90408 -12.74863 -12.62998 -12.50900 -12.43427 -12.41294 -12.30262 -12.20332 -11.74060 -11.57137 -11.40407 -11.11271 -11.04772 -10.73611 -10.72497 -10.64869 -10.43734 -9.59305 -9.49327 -9.22565 -8.91217 -8.74976 -7.99026 -6.93152 -6.50269 -4.05822 -0.36095 1.11973 2.09288 2.35271 2.61728 2.80490 3.10787 3.12388 3.17596 3.17988 3.44510 3.65066 3.90945 3.93610 4.11913 4.23455 4.39023 4.52036 4.63253 4.70486 4.83241 5.00746 5.03813 5.07707 5.15214 5.19024 5.24947 5.29511 5.37681 5.49885 5.52562 5.57787 5.67565 5.77847 6.11280 6.20699 6.28078 6.39886 6.52310 6.72232 6.96940 7.07606 7.24128 7.32430 7.40209 7.45117 7.85979 7.96383 8.30216 8.95515 9.66454 10.67457 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.002310 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.766299 B =12119.576578 C =13656.932057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.544 3.456 4 O -0.505 6.505 5 C -0.273 4.273 6 C 0.034 3.966 7 C -0.194 4.194 8 C 0.012 3.988 9 C -0.203 4.203 10 C 0.172 3.828 11 O -0.171 6.171 12 C -0.390 4.390 13 H 0.095 0.905 14 C 0.039 3.961 15 N -0.858 5.858 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.250 4.250 21 C -0.040 4.040 22 C 0.150 3.850 23 H 0.126 0.874 24 C -0.133 4.133 25 C -0.584 4.584 26 S 2.391 3.609 27 O -0.937 6.937 28 O -0.934 6.934 29 C -0.609 4.609 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.271 0.729 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.901 -8.238 -3.074 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.348 5.348 3 C 0.337 3.663 4 O -0.381 6.381 5 C -0.294 4.294 6 C 0.015 3.985 7 C -0.195 4.195 8 C -0.007 4.007 9 C -0.222 4.222 10 C 0.117 3.883 11 O -0.073 6.073 12 C -0.466 4.466 13 H 0.112 0.888 14 C -0.166 4.166 15 N -0.492 5.492 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.270 4.270 21 C -0.058 4.058 22 C 0.044 3.956 23 H 0.144 0.856 24 C -0.172 4.172 25 C -0.714 4.714 26 S 2.573 3.427 27 O -0.934 6.934 28 O -0.931 6.931 29 C -0.739 4.739 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.993 -9.245 -3.307 23.176 hybrid contribution 0.451 1.171 -0.254 1.280 sum -20.542 -8.074 -3.561 22.357 Atomic orbital electron populations 1.21859 0.79870 1.03544 1.01994 1.47739 1.06523 1.04822 1.75722 1.18606 0.87675 0.83910 0.76159 1.91003 1.12992 1.86291 1.47775 1.22611 0.99443 0.92079 1.15282 1.22390 0.93284 0.96556 0.86277 1.18292 0.92460 1.05007 1.03739 1.20423 0.93981 0.92563 0.93742 1.20001 0.92429 1.04061 1.05727 1.19530 0.85541 0.91951 0.91304 1.83905 1.12726 1.60617 1.50092 1.21453 0.86976 1.22329 1.15842 0.88788 1.25338 0.96574 0.97509 0.97139 1.70028 1.14608 1.35993 1.28617 0.85624 0.79672 0.78966 0.79046 1.19015 1.20078 1.20058 1.20962 0.96367 1.05896 1.03746 1.20750 0.92723 0.95544 0.96775 1.21303 1.00672 0.84151 0.89504 0.85625 1.22590 1.02873 0.91281 1.00432 1.30579 1.12088 1.05063 1.23701 1.09006 0.75606 0.78371 0.79671 1.93623 1.39484 1.74428 1.85870 1.93642 1.53581 1.73143 1.72766 1.30973 1.12147 1.22842 1.07965 0.92565 0.91017 0.90063 0.85791 0.85988 0.88144 0.86834 0.91935 0.85615 0.87593 0.87625 0.89128 0.84109 0.83835 0.84141 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 8.97 59.85 0.54 0.94 16 2 N -0.61 -5.77 2.78 -174.42 -0.49 -6.26 16 3 C 0.54 7.19 6.63 -13.04 -0.09 7.10 16 4 O -0.51 -8.96 11.51 5.16 0.06 -8.90 16 5 C -0.27 -3.09 9.02 -37.50 -0.34 -3.43 16 6 C 0.03 0.45 9.80 -37.19 -0.36 0.08 16 7 C -0.19 -3.39 4.54 -105.03 -0.48 -3.87 16 8 C 0.01 0.22 6.60 -39.15 -0.26 -0.04 16 9 C -0.20 -4.46 9.97 -39.47 -0.39 -4.86 16 10 C 0.17 4.25 6.66 -38.88 -0.26 3.99 16 11 O -0.17 -4.93 9.74 0.72 0.01 -4.93 16 12 C -0.39 -10.93 9.48 30.91 0.29 -10.64 16 13 H 0.09 2.45 5.18 -52.49 -0.27 2.17 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 15 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 16 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 20 C -0.25 -5.55 9.14 -39.46 -0.36 -5.91 16 21 C -0.04 -0.74 9.78 -39.14 -0.38 -1.12 16 22 C 0.15 1.28 2.95 -66.87 -0.20 1.09 16 23 H 0.13 1.35 6.91 -51.93 -0.36 1.00 16 24 C -0.13 -0.81 5.92 -25.19 -0.15 -0.96 16 25 C -0.58 -3.14 7.31 38.24 0.28 -2.86 16 26 S 2.39 18.31 6.11 -107.50 -0.66 17.65 16 27 O -0.94 -9.72 18.15 -57.71 -1.05 -10.77 16 28 O -0.93 -11.07 18.15 -57.71 -1.05 -12.12 16 29 C -0.61 -4.25 6.85 37.77 0.26 -3.99 16 30 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 31 H 0.07 0.28 6.25 -51.93 -0.32 -0.05 16 32 H 0.08 0.39 6.19 -51.93 -0.32 0.07 16 33 H 0.12 0.96 6.34 -52.49 -0.33 0.63 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.10 1.69 7.01 -52.49 -0.37 1.32 16 36 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.13 2.78 5.62 -52.49 -0.29 2.48 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.39 6.31 -51.93 -0.33 0.06 16 42 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.14 0.77 6.94 -51.93 -0.36 0.41 16 45 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -38.77 379.80 -9.17 -47.95 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.47 Total: 4.04 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -2.00 Total: -23.50 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.27 Total: -30.61 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -2.03 Total: -36.72 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 18.31 SS G_CDS: -0.66 Total: 17.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.77 -9.17 -47.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096405150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.518 kcal (2) G-P(sol) polarization free energy of solvation -38.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds