Wall clock time and date at job start Tue Mar 31 2020 07:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48503 * 109.47239 * 274.98722 * 3 2 1 5 5 H 1.48498 * 109.47149 * 34.98747 * 3 2 1 6 6 H 1.48503 * 109.47133 * 154.98935 * 3 2 1 7 7 C 1.39901 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00179 * 147.60280 * 7 2 1 9 9 C 1.41157 * 120.00184 * 327.60164 * 7 2 1 10 10 C 1.40860 * 120.16666 * 157.92406 * 9 7 2 11 11 C 1.36370 * 119.83260 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16834 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83507 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00039 * 37.79086 * 13 12 11 15 15 O 1.21581 * 119.99686 * 356.69825 * 14 13 12 16 16 N 1.34775 * 119.99956 * 176.69239 * 14 13 12 17 17 C 1.46501 * 120.00116 * 179.72338 * 16 14 13 18 18 H 1.09001 * 109.50253 * 325.20078 * 17 16 14 19 19 C 1.53118 * 109.49955 * 85.27783 * 17 16 14 20 20 C 1.53125 * 109.16163 * 177.59876 * 19 17 16 21 21 C 1.53038 * 109.27374 * 302.34861 * 20 19 17 22 22 N 1.46841 * 109.52927 * 59.17640 * 21 20 19 23 23 C 1.39669 * 111.00404 * 174.15952 * 22 21 20 24 24 C 1.38912 * 120.07448 * 123.67939 * 23 22 21 25 25 C 1.38113 * 119.92310 * 179.76982 * 24 23 22 26 26 C 1.38285 * 120.07408 * 0.51128 * 25 24 23 27 27 C 1.38288 * 120.14799 * 359.73542 * 26 25 24 28 28 C 1.38094 * 120.07734 * 0.02562 * 27 26 25 29 29 C 1.46847 * 111.19939 * 298.26236 * 22 21 20 30 30 C 1.39477 * 120.33004 * 0.25256 * 12 11 10 31 31 C 1.36379 * 120.16848 * 359.44456 * 30 12 11 32 32 H 0.97000 * 119.99475 * 359.97438 * 1 2 3 33 33 H 1.08001 * 120.08313 * 0.04270 * 10 9 7 34 34 H 1.07994 * 119.92032 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00256 * 217.79225 * 13 12 11 36 36 H 0.97006 * 120.00267 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.52616 * 297.49925 * 19 17 16 38 38 H 1.08993 * 109.52452 * 57.69377 * 19 17 16 39 39 H 1.09000 * 109.49994 * 62.28497 * 20 19 17 40 40 H 1.08991 * 109.50583 * 182.36568 * 20 19 17 41 41 H 1.09004 * 109.46217 * 179.19677 * 21 20 19 42 42 H 1.08997 * 109.46329 * 299.16813 * 21 20 19 43 43 H 1.07998 * 120.04083 * 0.02562 * 24 23 22 44 44 H 1.08000 * 119.95860 * 180.24836 * 25 24 23 45 45 H 1.08005 * 119.92409 * 179.72652 * 26 25 24 46 46 H 1.08005 * 119.95944 * 180.02562 * 27 26 25 47 47 H 1.08005 * 120.03962 * 179.97438 * 28 27 26 48 48 H 1.09005 * 109.45671 * 301.71868 * 29 22 21 49 49 H 1.08999 * 109.46922 * 181.75969 * 29 22 21 50 50 H 1.08001 * 119.91725 * 179.70593 * 30 12 11 51 51 H 1.08001 * 120.08604 * 180.26098 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4971 2.6199 0.8028 6 1 3.5892 1.4119 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9621 -1.2843 -0.5017 9 6 1.4672 -2.3392 0.6539 10 6 1.8847 -3.6352 0.2930 11 6 1.3571 -4.7198 0.9294 12 6 0.4059 -4.5483 1.9351 13 7 -0.1285 -5.6606 2.5800 14 6 0.6567 -6.7201 2.8585 15 8 1.8164 -6.7297 2.4936 16 7 0.1563 -7.7686 3.5415 17 6 1.0081 -8.9229 3.8390 18 1 1.7012 -9.0859 3.0137 19 6 1.7969 -8.6582 5.1244 20 6 2.6387 -9.8923 5.4606 21 6 1.7194 -11.1075 5.6027 22 7 0.9878 -11.3191 4.3472 23 6 0.2384 -12.4966 4.3969 24 6 -1.1315 -12.4600 4.1692 25 6 -1.8688 -13.6269 4.2144 26 6 -1.2466 -14.8293 4.4962 27 6 0.1160 -14.8685 4.7284 28 6 0.8601 -13.7062 4.6799 29 6 0.1361 -10.1662 4.0282 30 6 -0.0167 -3.2685 2.2940 31 6 0.5064 -2.1740 1.6708 32 1 -0.4849 0.8401 0.0004 33 1 2.6210 -3.7695 -0.4856 34 1 1.6759 -5.7140 0.6535 35 1 -1.0660 -5.6731 2.8288 36 1 -0.7691 -7.7610 3.8324 37 1 2.4518 -7.7990 4.9796 38 1 1.1045 -8.4560 5.9415 39 1 3.3575 -10.0713 4.6609 40 1 3.1705 -9.7259 6.3973 41 1 2.3172 -11.9907 5.8280 42 1 1.0098 -10.9334 6.4115 43 1 -1.6187 -11.5207 3.9531 44 1 -2.9332 -13.5997 4.0335 45 1 -1.8263 -15.7398 4.5353 46 1 0.5989 -15.8093 4.9479 47 1 1.9243 -13.7374 4.8618 48 1 -0.5661 -9.9966 4.8444 49 1 -0.4162 -10.3656 3.1099 50 1 -0.7571 -3.1437 3.0704 51 1 0.1812 -1.1835 1.9527 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096406971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:57 Heat of formation + Delta-G solvation = 29.342663 kcal Electronic energy + Delta-G solvation = -31306.661771 eV Core-core repulsion = 27170.402634 eV Total energy + Delta-G solvation = -4136.259138 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.85383 -39.80816 -38.25130 -37.25880 -35.01614 -34.26401 -33.32536 -32.85327 -31.47702 -29.98205 -29.49854 -29.26497 -28.53236 -25.04636 -24.94772 -23.82777 -22.07817 -21.87841 -21.38678 -20.72784 -20.31710 -19.91561 -18.10348 -17.95655 -17.26647 -16.65960 -16.05924 -15.72187 -15.33742 -15.23795 -15.09019 -14.85456 -14.76003 -14.26128 -14.00087 -13.89043 -13.80319 -13.78543 -13.52320 -13.01375 -12.98326 -12.71117 -12.58624 -12.04818 -11.96047 -11.81263 -11.72290 -11.54277 -11.34645 -11.17929 -11.12067 -10.96133 -10.92126 -10.85130 -10.49636 -10.16350 -10.01151 -9.70043 -9.56496 -9.26678 -9.12196 -8.92390 -8.65687 -8.16787 -7.50359 -7.09447 -6.84005 -4.22935 1.05484 1.08022 2.66919 2.85439 3.06076 3.07720 3.14461 3.21626 3.35853 3.61247 3.74705 3.92027 4.36359 4.46431 4.54951 4.61306 4.62371 4.67376 4.72219 4.78738 4.85854 4.95295 5.09537 5.14270 5.18545 5.27329 5.32187 5.43830 5.50832 5.58484 5.70589 5.72937 5.81764 5.94875 6.05784 6.09973 6.13306 6.22173 6.23989 6.43567 6.46070 6.54337 6.71347 6.81632 6.88477 6.96140 7.04226 7.14083 7.30782 7.35529 7.63268 7.91100 7.99466 8.07306 8.30734 8.52802 8.59820 8.88273 8.95201 9.16222 10.05914 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.001537 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.665212 B =18213.521039 C =18658.412708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.089 3.911 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.222 4.222 11 C -0.066 4.066 12 C -0.002 4.002 13 N -0.665 5.665 14 C 0.697 3.303 15 O -0.577 6.577 16 N -0.750 5.750 17 C 0.170 3.830 18 H 0.098 0.902 19 C -0.134 4.134 20 C -0.117 4.117 21 C 0.058 3.942 22 N -0.484 5.484 23 C 0.117 3.883 24 C -0.173 4.173 25 C -0.093 4.093 26 C -0.150 4.150 27 C -0.096 4.096 28 C -0.141 4.141 29 C 0.047 3.953 30 C -0.104 4.104 31 C -0.170 4.170 32 H 0.282 0.718 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.389 0.611 36 H 0.390 0.610 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.050 0.950 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -23.540 12.769 27.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.108 3.892 10 C -0.242 4.242 11 C -0.086 4.086 12 C -0.094 4.094 13 N -0.311 5.311 14 C 0.397 3.603 15 O -0.453 6.453 16 N -0.406 5.406 17 C 0.064 3.936 18 H 0.116 0.884 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.067 4.067 22 N -0.199 5.199 23 C 0.019 3.981 24 C -0.194 4.194 25 C -0.112 4.112 26 C -0.169 4.169 27 C -0.114 4.114 28 C -0.162 4.162 29 C -0.081 4.081 30 C -0.125 4.125 31 C -0.190 4.190 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.222 0.778 36 H 0.223 0.777 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.143 0.857 48 H 0.068 0.932 49 H 0.107 0.893 50 H 0.106 0.894 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.280 -23.364 12.048 26.491 hybrid contribution -1.263 0.883 0.756 1.716 sum -4.543 -22.481 12.804 26.267 Atomic orbital electron populations 1.69956 1.08054 1.29746 1.31688 1.25921 0.94341 1.01437 0.91561 0.86532 0.81556 0.80939 0.79167 1.19499 1.19942 1.18118 1.19490 1.05443 0.93792 1.30800 0.90071 1.17589 0.89800 0.91855 0.89927 1.20597 1.07009 0.92314 1.04329 1.20329 0.96462 0.98045 0.93770 1.16846 1.07030 0.84082 1.01448 1.42049 1.11367 1.15980 1.61691 1.15975 0.85108 0.80171 0.79021 1.90914 1.16204 1.80274 1.57924 1.45064 1.14796 1.18805 1.61911 1.20610 0.91795 0.82742 0.98459 0.88377 1.22045 0.99329 0.98737 0.97197 1.21598 0.97972 0.93247 1.02689 1.22307 0.96569 0.99719 0.88110 1.58837 1.26954 1.01216 1.32880 1.18956 0.90895 0.90797 0.97459 1.21357 0.92749 0.99332 1.05939 1.21023 0.99707 0.92353 0.98113 1.21078 0.95001 0.97940 1.02911 1.21018 0.94100 0.97749 0.98571 1.20800 0.99986 0.91146 1.04225 1.22462 0.94519 0.89414 1.01686 1.20147 1.00955 0.91553 0.99835 1.20596 1.02548 0.96550 0.99327 0.90693 0.88804 0.87866 0.77769 0.77693 0.90339 0.92130 0.90430 0.90636 0.89840 0.93753 0.85574 0.86093 0.86278 0.85956 0.85717 0.93219 0.89331 0.89408 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.60 11.78 55.55 0.65 -18.95 16 2 C 0.09 2.21 4.77 -17.34 -0.08 2.13 16 3 Si 0.89 18.37 29.66 -169.99 -5.04 13.33 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.47 -12.50 8.94 -37.85 -0.34 -12.83 16 8 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 9 C 0.11 3.01 5.57 -106.80 -0.60 2.41 16 10 C -0.22 -5.76 9.74 -39.26 -0.38 -6.15 16 11 C -0.07 -1.62 8.59 -39.79 -0.34 -1.96 16 12 C 0.00 -0.04 6.25 -83.57 -0.52 -0.56 16 13 N -0.67 -11.81 5.30 -14.10 -0.07 -11.88 16 14 C 0.70 12.24 8.34 -86.92 -0.73 11.51 16 15 O -0.58 -12.66 13.62 5.29 0.07 -12.58 16 16 N -0.75 -9.16 5.08 -58.60 -0.30 -9.46 16 17 C 0.17 1.94 2.62 -67.85 -0.18 1.76 16 18 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 19 C -0.13 -1.43 5.58 -26.61 -0.15 -1.58 16 20 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 21 C 0.06 0.46 5.26 -3.84 -0.02 0.44 16 22 N -0.48 -4.48 4.70 -171.16 -0.80 -5.28 16 23 C 0.12 1.07 5.64 -83.79 -0.47 0.60 16 24 C -0.17 -1.47 8.82 -39.38 -0.35 -1.82 16 25 C -0.09 -0.71 10.04 -39.61 -0.40 -1.11 16 26 C -0.15 -1.09 10.04 -39.55 -0.40 -1.48 16 27 C -0.10 -0.70 10.04 -39.62 -0.40 -1.10 16 28 C -0.14 -1.17 9.16 -39.38 -0.36 -1.53 16 29 C 0.05 0.42 3.61 -3.84 -0.01 0.41 16 30 C -0.10 -2.41 9.90 -39.79 -0.39 -2.80 16 31 C -0.17 -4.39 8.74 -39.26 -0.34 -4.73 16 32 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 33 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 34 H 0.10 2.53 6.45 -52.49 -0.34 2.19 16 35 H 0.39 5.42 8.84 -40.82 -0.36 5.06 16 36 H 0.39 3.51 8.62 -40.82 -0.35 3.16 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.57 6.72 -51.93 -0.35 0.22 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.13 0.94 5.81 -52.49 -0.30 0.64 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 47 H 0.12 0.90 7.17 -52.48 -0.38 0.52 16 48 H 0.05 0.39 7.71 -51.93 -0.40 -0.01 16 49 H 0.09 0.80 7.01 -51.93 -0.36 0.44 16 50 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 51 H 0.11 2.78 6.53 -52.49 -0.34 2.43 16 LS Contribution 408.94 15.07 6.16 6.16 Total: -1.00 -31.40 408.94 -13.31 -44.71 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -7.36 Total: 13.54 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -6.62 Total: -19.58 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.52 Total: -45.57 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.04 Total: 13.33 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.40 -13.31 -44.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096406971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.053 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds