Wall clock time and date at job start Tue Mar 31 2020 07:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48503 * 109.47239 * 274.98722 * 3 2 1 5 5 H 1.48498 * 109.47149 * 34.98747 * 3 2 1 6 6 H 1.48503 * 109.47133 * 154.98935 * 3 2 1 7 7 C 1.39901 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00179 * 147.60280 * 7 2 1 9 9 C 1.41157 * 120.00184 * 327.60164 * 7 2 1 10 10 C 1.40860 * 120.16666 * 157.92406 * 9 7 2 11 11 C 1.36370 * 119.83260 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16834 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83507 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00039 * 37.79086 * 13 12 11 15 15 O 1.21581 * 119.99686 * 356.69825 * 14 13 12 16 16 N 1.34775 * 119.99956 * 176.69239 * 14 13 12 17 17 C 1.46501 * 120.00116 * 179.72338 * 16 14 13 18 18 H 1.09001 * 109.50253 * 325.20078 * 17 16 14 19 19 C 1.53118 * 109.49955 * 85.27783 * 17 16 14 20 20 C 1.53125 * 109.16163 * 177.59876 * 19 17 16 21 21 C 1.53038 * 109.27374 * 302.34861 * 20 19 17 22 22 N 1.46841 * 109.52927 * 59.17640 * 21 20 19 23 23 C 1.39669 * 111.00404 * 174.15952 * 22 21 20 24 24 C 1.38912 * 120.07448 * 123.67939 * 23 22 21 25 25 C 1.38113 * 119.92310 * 179.76982 * 24 23 22 26 26 C 1.38285 * 120.07408 * 0.51128 * 25 24 23 27 27 C 1.38288 * 120.14799 * 359.73542 * 26 25 24 28 28 C 1.38094 * 120.07734 * 0.02562 * 27 26 25 29 29 C 1.46847 * 111.19939 * 298.26236 * 22 21 20 30 30 C 1.39477 * 120.33004 * 0.25256 * 12 11 10 31 31 C 1.36379 * 120.16848 * 359.44456 * 30 12 11 32 32 H 0.97000 * 119.99475 * 359.97438 * 1 2 3 33 33 H 1.08001 * 120.08313 * 0.04270 * 10 9 7 34 34 H 1.07994 * 119.92032 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00256 * 217.79225 * 13 12 11 36 36 H 0.97006 * 120.00267 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.52616 * 297.49925 * 19 17 16 38 38 H 1.08993 * 109.52452 * 57.69377 * 19 17 16 39 39 H 1.09000 * 109.49994 * 62.28497 * 20 19 17 40 40 H 1.08991 * 109.50583 * 182.36568 * 20 19 17 41 41 H 1.09004 * 109.46217 * 179.19677 * 21 20 19 42 42 H 1.08997 * 109.46329 * 299.16813 * 21 20 19 43 43 H 1.07998 * 120.04083 * 0.02562 * 24 23 22 44 44 H 1.08000 * 119.95860 * 180.24836 * 25 24 23 45 45 H 1.08005 * 119.92409 * 179.72652 * 26 25 24 46 46 H 1.08005 * 119.95944 * 180.02562 * 27 26 25 47 47 H 1.08005 * 120.03962 * 179.97438 * 28 27 26 48 48 H 1.09005 * 109.45671 * 301.71868 * 29 22 21 49 49 H 1.08999 * 109.46922 * 181.75969 * 29 22 21 50 50 H 1.08001 * 119.91725 * 179.70593 * 30 12 11 51 51 H 1.08001 * 120.08604 * 180.26098 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4971 2.6199 0.8028 6 1 3.5892 1.4119 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9621 -1.2843 -0.5017 9 6 1.4672 -2.3392 0.6539 10 6 1.8847 -3.6352 0.2930 11 6 1.3571 -4.7198 0.9294 12 6 0.4059 -4.5483 1.9351 13 7 -0.1285 -5.6606 2.5800 14 6 0.6567 -6.7201 2.8585 15 8 1.8164 -6.7297 2.4936 16 7 0.1563 -7.7686 3.5415 17 6 1.0081 -8.9229 3.8390 18 1 1.7012 -9.0859 3.0137 19 6 1.7969 -8.6582 5.1244 20 6 2.6387 -9.8923 5.4606 21 6 1.7194 -11.1075 5.6027 22 7 0.9878 -11.3191 4.3472 23 6 0.2384 -12.4966 4.3969 24 6 -1.1315 -12.4600 4.1692 25 6 -1.8688 -13.6269 4.2144 26 6 -1.2466 -14.8293 4.4962 27 6 0.1160 -14.8685 4.7284 28 6 0.8601 -13.7062 4.6799 29 6 0.1361 -10.1662 4.0282 30 6 -0.0167 -3.2685 2.2940 31 6 0.5064 -2.1740 1.6708 32 1 -0.4849 0.8401 0.0004 33 1 2.6210 -3.7695 -0.4856 34 1 1.6759 -5.7140 0.6535 35 1 -1.0660 -5.6731 2.8288 36 1 -0.7691 -7.7610 3.8324 37 1 2.4518 -7.7990 4.9796 38 1 1.1045 -8.4560 5.9415 39 1 3.3575 -10.0713 4.6609 40 1 3.1705 -9.7259 6.3973 41 1 2.3172 -11.9907 5.8280 42 1 1.0098 -10.9334 6.4115 43 1 -1.6187 -11.5207 3.9531 44 1 -2.9332 -13.5997 4.0335 45 1 -1.8263 -15.7398 4.5353 46 1 0.5989 -15.8093 4.9479 47 1 1.9243 -13.7374 4.8618 48 1 -0.5661 -9.9966 4.8444 49 1 -0.4162 -10.3656 3.1099 50 1 -0.7571 -3.1437 3.0704 51 1 0.1812 -1.1835 1.9527 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096406971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:56 Heat of formation + Delta-G solvation = 11.391096 kcal Electronic energy + Delta-G solvation = -31307.440210 eV Core-core repulsion = 27170.402634 eV Total energy + Delta-G solvation = -4137.037576 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.73517 -41.04993 -39.41376 -38.63797 -36.32647 -35.76089 -34.82479 -33.94586 -32.14621 -31.46531 -31.10454 -30.22139 -29.76122 -26.75154 -25.70085 -24.74843 -23.48080 -22.77383 -22.53771 -22.17987 -21.61044 -20.96861 -19.46163 -19.09464 -18.79757 -18.07426 -17.05772 -16.78746 -16.45885 -16.41589 -16.13053 -15.88121 -15.75490 -15.61005 -15.31513 -15.07640 -14.70491 -14.59228 -14.48234 -14.38089 -14.22984 -13.94801 -13.82010 -13.63102 -13.34708 -13.29545 -12.82424 -12.66845 -12.50606 -12.36405 -12.31666 -12.10815 -11.95022 -11.91779 -11.71354 -11.67118 -11.56131 -11.24576 -10.92639 -10.63781 -10.49418 -10.09479 -9.82553 -9.45839 -8.96875 -8.77911 -8.69582 -6.21053 0.48214 0.51863 0.88125 1.15412 1.38479 1.45147 1.56252 1.69051 2.19377 2.22832 2.64899 2.69661 2.96818 3.41004 3.63362 3.71711 3.74857 3.93302 3.95220 4.09878 4.15504 4.20476 4.32974 4.39944 4.44423 4.46978 4.51540 4.57283 4.61378 4.65148 4.75502 4.80476 4.86779 4.91341 5.02808 5.11397 5.15970 5.17257 5.19663 5.26193 5.29935 5.34040 5.46625 5.52523 5.55305 5.64352 5.69515 5.79374 5.87476 6.02245 6.04621 6.13295 6.23717 6.35859 6.39017 6.64179 6.91084 7.01946 7.19201 7.70487 8.22392 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.001537 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.665212 B =18213.521039 C =18658.412708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.053 3.947 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.244 4.244 11 C -0.077 4.077 12 C 0.014 3.986 13 N -0.657 5.657 14 C 0.696 3.304 15 O -0.623 6.623 16 N -0.724 5.724 17 C 0.171 3.829 18 H 0.064 0.936 19 C -0.129 4.129 20 C -0.111 4.111 21 C 0.062 3.938 22 N -0.497 5.497 23 C 0.101 3.899 24 C -0.185 4.185 25 C -0.101 4.101 26 C -0.156 4.156 27 C -0.101 4.101 28 C -0.153 4.153 29 C 0.058 3.942 30 C -0.101 4.101 31 C -0.187 4.187 32 H 0.294 0.706 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.412 0.588 36 H 0.412 0.588 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.131 0.869 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.124 0.876 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 -24.649 14.763 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.166 4.166 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.264 4.264 11 C -0.097 4.097 12 C -0.080 4.080 13 N -0.305 5.305 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.381 5.381 17 C 0.065 3.935 18 H 0.082 0.918 19 C -0.168 4.168 20 C -0.150 4.150 21 C -0.063 4.063 22 N -0.212 5.212 23 C 0.003 3.997 24 C -0.206 4.206 25 C -0.120 4.120 26 C -0.175 4.175 27 C -0.119 4.119 28 C -0.173 4.173 29 C -0.070 4.070 30 C -0.121 4.121 31 C -0.207 4.207 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.249 0.751 36 H 0.248 0.752 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.160 0.840 47 H 0.148 0.852 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.142 0.858 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.058 -24.530 14.075 28.730 hybrid contribution -0.785 1.020 0.168 1.298 sum -5.843 -23.509 14.244 28.102 Atomic orbital electron populations 1.69946 1.09322 1.31397 1.31592 1.26696 0.95076 1.04331 0.90514 0.85388 0.79635 0.76250 0.79656 1.18438 1.18394 1.18662 1.19688 1.05807 0.95391 1.32656 0.90878 1.17904 0.90908 0.92321 0.90978 1.20706 1.07814 0.92806 1.05070 1.20413 0.97339 0.97354 0.94636 1.16867 1.05432 0.85561 1.00131 1.41805 1.12549 1.14824 1.61336 1.16120 0.84439 0.80798 0.78998 1.90896 1.18440 1.81248 1.59709 1.44790 1.15869 1.17355 1.60094 1.20632 0.91787 0.83395 0.97639 0.91807 1.21975 0.99206 0.98457 0.97185 1.21561 0.97673 0.92756 1.02963 1.22311 0.96546 0.99567 0.87887 1.58831 1.27331 1.01332 1.33731 1.19086 0.91323 0.90818 0.98450 1.21530 0.92706 1.00117 1.06268 1.21306 1.00666 0.92267 0.97755 1.21398 0.95250 0.98655 1.02173 1.21312 0.94347 0.98277 0.97974 1.20985 1.00508 0.91324 1.04511 1.22316 0.94061 0.88080 1.02495 1.20415 1.01008 0.90783 0.99913 1.20626 1.03150 0.97139 0.99793 0.89510 0.89237 0.88302 0.75099 0.75188 0.93663 0.90435 0.91943 0.88904 0.88684 0.92863 0.84889 0.84439 0.84378 0.84027 0.85161 0.91184 0.89384 0.85816 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.95 11.78 21.82 0.26 -40.69 16 2 C 0.05 2.68 4.77 85.24 0.41 3.09 16 3 Si 0.97 37.88 29.66 68.60 2.03 39.91 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.51 -28.23 8.94 23.39 0.21 -28.02 16 8 H 0.07 4.01 8.02 -2.91 -0.02 3.99 16 9 C 0.08 4.59 5.57 -21.28 -0.12 4.47 16 10 C -0.24 -13.27 9.74 22.48 0.22 -13.05 16 11 C -0.08 -3.91 8.59 22.13 0.19 -3.72 16 12 C 0.01 0.63 6.25 38.57 0.24 0.87 16 13 N -0.66 -22.41 5.30 -316.78 -1.68 -24.09 16 14 C 0.70 24.09 8.34 179.05 1.49 25.58 16 15 O -0.62 -28.03 13.62 -3.97 -0.05 -28.08 16 16 N -0.72 -16.70 5.08 -457.58 -2.33 -19.02 16 17 C 0.17 3.81 2.62 45.04 0.12 3.93 16 18 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 19 C -0.13 -2.68 5.58 30.68 0.17 -2.51 16 20 C -0.11 -1.83 6.09 30.65 0.19 -1.64 16 21 C 0.06 0.87 5.26 86.33 0.45 1.32 16 22 N -0.50 -8.54 4.70 -695.41 -3.27 -11.81 16 23 C 0.10 1.68 5.64 38.22 0.22 1.90 16 24 C -0.19 -2.81 8.82 22.40 0.20 -2.61 16 25 C -0.10 -1.33 10.04 22.25 0.22 -1.11 16 26 C -0.16 -1.90 10.04 22.29 0.22 -1.67 16 27 C -0.10 -1.27 10.04 22.25 0.22 -1.04 16 28 C -0.15 -2.30 9.16 22.40 0.21 -2.09 16 29 C 0.06 0.95 3.61 86.32 0.31 1.26 16 30 C -0.10 -4.57 9.90 22.13 0.22 -4.35 16 31 C -0.19 -9.80 8.74 22.48 0.20 -9.61 16 32 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 33 H 0.09 4.75 8.06 -2.91 -0.02 4.72 16 34 H 0.10 5.04 6.45 -2.91 -0.02 5.02 16 35 H 0.41 10.34 8.84 -92.71 -0.82 9.52 16 36 H 0.41 6.22 8.62 -92.70 -0.80 5.42 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.13 6.72 -2.39 -0.02 1.11 16 42 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 43 H 0.13 1.70 5.81 -2.91 -0.02 1.69 16 44 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 46 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.13 1.70 7.17 -2.91 -0.02 1.67 16 48 H 0.07 0.88 7.71 -2.38 -0.02 0.86 16 49 H 0.09 1.46 7.01 -2.39 -0.02 1.44 16 50 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 51 H 0.10 5.24 6.53 -2.91 -0.02 5.22 16 Total: -1.00 -71.34 408.94 -0.10 -71.44 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -0.65 Total: 41.34 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 5.59 Total: -29.00 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -7.02 Total: -95.61 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -71.34 -0.10 -71.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096406971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.832 kcal (2) G-P(sol) polarization free energy of solvation -71.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds