Wall clock time and date at job start Tue Mar 31 2020 07:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86798 * 119.99779 * 2 1 4 4 H 1.48505 * 109.47195 * 86.41323 * 3 2 1 5 5 H 1.48504 * 109.47561 * 326.41356 * 3 2 1 6 6 H 1.48501 * 109.47340 * 206.41180 * 3 2 1 7 7 C 1.39895 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07987 * 119.99961 * 36.52270 * 7 2 1 9 9 C 1.41155 * 119.99593 * 216.52673 * 7 2 1 10 10 C 1.40872 * 120.16435 * 22.84294 * 9 7 2 11 11 C 1.36376 * 119.82351 * 179.69059 * 10 9 7 12 12 C 1.39472 * 120.17324 * 0.58708 * 11 10 9 13 13 N 1.39242 * 119.83919 * 179.68970 * 12 11 10 14 14 C 1.34777 * 119.99700 * 34.41810 * 13 12 11 15 15 O 1.21584 * 120.00257 * 5.34402 * 14 13 12 16 16 N 1.34777 * 120.00024 * 185.34076 * 14 13 12 17 17 C 1.46502 * 120.00219 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.50285 * 34.92028 * 17 16 14 19 19 C 1.53120 * 109.50156 * 274.80487 * 17 16 14 20 20 C 1.53121 * 109.15940 * 182.40264 * 19 17 16 21 21 C 1.53037 * 109.27686 * 57.65200 * 20 19 17 22 22 N 1.46842 * 109.52613 * 300.82290 * 21 20 19 23 23 C 1.39673 * 111.00244 * 185.84103 * 22 21 20 24 24 C 1.38909 * 120.07359 * 235.51344 * 23 22 21 25 25 C 1.38112 * 119.92277 * 179.76904 * 24 23 22 26 26 C 1.38284 * 120.07475 * 0.50204 * 25 24 23 27 27 C 1.38290 * 120.14846 * 359.74998 * 26 25 24 28 28 C 1.38104 * 120.07545 * 359.97438 * 27 26 25 29 29 C 1.46848 * 111.20011 * 61.74116 * 22 21 20 30 30 C 1.39479 * 120.33126 * 359.71335 * 12 11 10 31 31 C 1.36377 * 120.17139 * 359.97438 * 30 12 11 32 32 H 0.96996 * 120.00100 * 185.10733 * 1 2 3 33 33 H 1.08003 * 120.08920 * 359.97438 * 10 9 7 34 34 H 1.08007 * 119.91464 * 180.27570 * 11 10 9 35 35 H 0.96997 * 120.00268 * 214.42551 * 13 12 11 36 36 H 0.96999 * 119.99741 * 0.02562 * 16 14 13 37 37 H 1.09001 * 109.52345 * 302.30547 * 19 17 16 38 38 H 1.08999 * 109.52508 * 62.49712 * 19 17 16 39 39 H 1.09003 * 109.50516 * 297.71244 * 20 19 17 40 40 H 1.09003 * 109.53536 * 177.61242 * 20 19 17 41 41 H 1.09009 * 109.46094 * 180.80483 * 21 20 19 42 42 H 1.09003 * 109.46048 * 60.84074 * 21 20 19 43 43 H 1.07995 * 120.03812 * 359.97438 * 24 23 22 44 44 H 1.07990 * 119.96204 * 180.25538 * 25 24 23 45 45 H 1.07994 * 119.92942 * 179.76916 * 26 25 24 46 46 H 1.08000 * 119.96290 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.03291 * 180.02562 * 28 27 26 48 48 H 1.08996 * 109.46191 * 178.24437 * 29 22 21 49 49 H 1.08995 * 109.45045 * 58.26902 * 29 22 21 50 50 H 1.08004 * 119.91773 * 180.02562 * 30 12 11 51 51 H 1.08001 * 120.09091 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4144 2.0903 1.3974 5 1 1.4802 2.6297 -0.7745 6 1 3.5762 1.4196 -0.6228 7 6 2.0083 -1.2115 -0.0005 8 1 1.6274 -2.0546 -0.5575 9 6 3.2119 -1.3318 0.7270 10 6 3.4762 -0.4658 1.8062 11 6 4.6385 -0.5923 2.5084 12 6 5.5697 -1.5678 2.1528 13 7 6.7570 -1.6866 2.8705 14 6 6.7706 -1.4418 4.1958 15 8 5.7306 -1.2127 4.7824 16 7 7.9371 -1.4512 4.8708 17 6 7.9519 -1.1857 6.3115 18 1 7.0523 -1.5995 6.7670 19 6 7.9990 0.3257 6.5523 20 6 8.0749 0.5925 8.0582 21 6 9.3067 -0.1094 8.6343 22 7 9.2137 -1.5524 8.3787 23 6 10.2557 -2.2399 9.0052 24 6 11.0926 -3.0628 8.2622 25 6 12.1250 -3.7374 8.8841 26 6 12.3195 -3.6026 10.2465 27 6 11.4849 -2.7883 10.9900 28 6 10.4542 -2.1064 10.3736 29 6 9.1874 -1.8360 6.9382 30 6 5.3178 -2.4247 1.0815 31 6 4.1573 -2.3146 0.3738 32 1 -0.4850 -0.8367 0.0748 33 1 2.7583 0.2933 2.0798 34 1 4.8406 0.0680 3.3389 35 1 7.5742 -1.9453 2.4166 36 1 8.7668 -1.6337 4.4027 37 1 8.8783 0.7452 6.0634 38 1 7.0996 0.7876 6.1454 39 1 7.1771 0.2072 8.5417 40 1 8.1514 1.6654 8.2349 41 1 9.3558 0.0667 9.7089 42 1 10.2050 0.2862 8.1602 43 1 10.9383 -3.1723 7.1990 44 1 12.7785 -4.3740 8.3063 45 1 13.1251 -4.1341 10.7309 46 1 11.6393 -2.6855 12.0540 47 1 9.8031 -1.4703 10.9549 48 1 9.1496 -2.9139 6.7809 49 1 10.0861 -1.4322 6.4722 50 1 6.0434 -3.1780 0.8122 51 1 3.9634 -2.9791 -0.4552 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096406972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:02 Heat of formation + Delta-G solvation = 26.081538 kcal Electronic energy + Delta-G solvation = -31520.996326 eV Core-core repulsion = 27384.595776 eV Total energy + Delta-G solvation = -4136.400550 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.184 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -40.89110 -39.90287 -38.32080 -37.41949 -35.07292 -34.35379 -33.39043 -33.00127 -31.51689 -30.08591 -29.73724 -29.36530 -28.71134 -25.03071 -24.75994 -23.73321 -21.98813 -21.88567 -21.64855 -20.96452 -20.34668 -19.81534 -18.29976 -18.12798 -17.90592 -16.83056 -16.14416 -15.75393 -15.39215 -15.17351 -15.11147 -14.79254 -14.42896 -14.40500 -14.07206 -13.94471 -13.85858 -13.80807 -13.65717 -13.34970 -13.02003 -12.72515 -12.57791 -12.43588 -12.08637 -11.83037 -11.74707 -11.63517 -11.42296 -11.20132 -11.02197 -10.98319 -10.89373 -10.73063 -10.23548 -10.16760 -10.04816 -9.75508 -9.65020 -9.28885 -9.10220 -9.00387 -8.74094 -8.18726 -7.72632 -7.44996 -7.11138 -4.38872 1.03289 1.05845 2.58901 2.78975 2.83753 3.24949 3.31158 3.35116 3.54060 3.59740 3.65465 4.05556 4.32397 4.42459 4.48105 4.57305 4.59111 4.61814 4.67895 4.75708 4.83324 4.91927 5.07274 5.11254 5.15841 5.24394 5.28937 5.40525 5.46750 5.47888 5.55678 5.70200 5.78654 5.91941 6.00024 6.03067 6.07486 6.08865 6.21870 6.24285 6.41214 6.48469 6.59491 6.65808 6.73321 6.89439 6.93194 7.09857 7.11700 7.42950 7.50453 7.70907 7.80307 7.89906 8.05185 8.41189 8.44398 8.63597 8.79603 9.04606 9.87847 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.022111 B = 0.001724 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.006813 B =16239.250198 C =17003.100921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.057 3.943 3 Si 1.060 2.940 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.079 0.921 9 C 0.092 3.908 10 C -0.236 4.236 11 C -0.055 4.055 12 C -0.003 4.003 13 N -0.666 5.666 14 C 0.696 3.304 15 O -0.574 6.574 16 N -0.749 5.749 17 C 0.170 3.830 18 H 0.099 0.901 19 C -0.134 4.134 20 C -0.117 4.117 21 C 0.058 3.942 22 N -0.484 5.484 23 C 0.117 3.883 24 C -0.173 4.173 25 C -0.093 4.093 26 C -0.150 4.150 27 C -0.095 4.095 28 C -0.141 4.141 29 C 0.047 3.953 30 C -0.091 4.091 31 C -0.214 4.214 32 H 0.291 0.709 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.391 0.609 36 H 0.390 0.610 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.088 0.912 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.710 -1.610 17.117 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.167 4.167 3 Si 0.884 3.116 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.089 3.911 10 C -0.256 4.256 11 C -0.075 4.075 12 C -0.096 4.096 13 N -0.312 5.312 14 C 0.397 3.603 15 O -0.451 6.451 16 N -0.405 5.405 17 C 0.063 3.937 18 H 0.117 0.883 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.067 4.067 22 N -0.199 5.199 23 C 0.019 3.981 24 C -0.194 4.194 25 C -0.112 4.112 26 C -0.169 4.169 27 C -0.114 4.114 28 C -0.162 4.162 29 C -0.081 4.081 30 C -0.111 4.111 31 C -0.234 4.234 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.224 0.776 36 H 0.223 0.777 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.107 0.893 49 H 0.068 0.932 50 H 0.110 0.890 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.903 0.102 17.728 28.963 hybrid contribution 1.514 -1.974 -0.694 2.582 sum 24.417 -1.872 17.034 29.830 Atomic orbital electron populations 1.70569 1.08886 1.33199 1.28398 1.27285 0.95130 1.04720 0.89582 0.83824 0.76200 0.73339 0.78277 1.19747 1.21141 1.18963 1.20489 1.05861 1.00058 1.28771 0.90345 1.17685 0.91510 0.91076 0.90815 1.20681 0.99172 1.05543 1.00154 1.20311 0.93896 0.95514 0.97780 1.16811 0.89705 1.03113 0.99932 1.42050 1.11029 1.72223 1.05896 1.15962 0.83676 0.78946 0.81754 1.90937 1.30772 1.55626 1.67719 1.45053 1.08152 1.78523 1.08753 1.20630 0.98812 0.94681 0.79542 0.88326 1.22048 1.03035 0.96297 0.95947 1.21600 0.98175 1.00162 0.95586 1.22311 0.98208 0.84503 1.01695 1.58833 1.40886 1.09148 1.11017 1.18958 0.89246 0.96427 0.93493 1.21338 0.96267 1.01742 1.00040 1.21018 0.97021 0.98302 0.94851 1.21077 1.00779 1.00783 0.94304 1.21023 0.94645 0.96003 0.99730 1.20802 0.99667 1.02895 0.92813 1.22456 0.97526 1.01748 0.86327 1.20077 0.97466 0.96840 0.96709 1.20475 0.94976 1.04949 1.02961 0.89788 0.87963 0.87685 0.77646 0.77658 0.92080 0.90354 0.90410 0.90584 0.89804 0.93727 0.85591 0.86096 0.86270 0.85941 0.85703 0.89332 0.93199 0.88976 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.05 13.66 55.55 0.76 -20.29 16 2 C 0.06 1.49 5.08 -17.34 -0.09 1.41 16 3 Si 1.06 24.17 25.90 -169.99 -4.40 19.77 16 4 H -0.27 -6.05 6.55 56.52 0.37 -5.68 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.52 -14.25 9.26 -37.86 -0.35 -14.60 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 9 C 0.09 2.42 5.17 -106.80 -0.55 1.87 16 10 C -0.24 -6.06 7.66 -39.26 -0.30 -6.36 16 11 C -0.05 -1.32 8.57 -39.79 -0.34 -1.66 16 12 C 0.00 -0.07 6.27 -83.57 -0.52 -0.59 16 13 N -0.67 -11.19 5.31 -14.10 -0.07 -11.26 16 14 C 0.70 11.83 8.25 -86.92 -0.72 11.12 16 15 O -0.57 -12.45 13.73 5.29 0.07 -12.37 16 16 N -0.75 -8.77 5.08 -58.60 -0.30 -9.07 16 17 C 0.17 1.88 2.62 -67.85 -0.18 1.70 16 18 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 19 C -0.13 -1.40 5.58 -26.61 -0.15 -1.55 16 20 C -0.12 -0.99 6.09 -26.65 -0.16 -1.16 16 21 C 0.06 0.45 5.26 -3.84 -0.02 0.43 16 22 N -0.48 -4.40 4.70 -171.15 -0.80 -5.20 16 23 C 0.12 1.05 5.64 -83.79 -0.47 0.58 16 24 C -0.17 -1.44 8.82 -39.38 -0.35 -1.78 16 25 C -0.09 -0.69 10.04 -39.61 -0.40 -1.09 16 26 C -0.15 -1.07 10.04 -39.55 -0.40 -1.46 16 27 C -0.10 -0.69 10.04 -39.61 -0.40 -1.08 16 28 C -0.14 -1.16 9.16 -39.38 -0.36 -1.52 16 29 C 0.05 0.41 3.62 -3.83 -0.01 0.40 16 30 C -0.09 -1.93 9.89 -39.79 -0.39 -2.32 16 31 C -0.21 -5.09 9.74 -39.26 -0.38 -5.47 16 32 H 0.29 7.54 8.73 -40.82 -0.36 7.19 16 33 H 0.10 2.64 5.15 -52.48 -0.27 2.37 16 34 H 0.11 2.52 6.47 -52.48 -0.34 2.18 16 35 H 0.39 4.96 8.83 -40.82 -0.36 4.60 16 36 H 0.39 3.27 8.62 -40.82 -0.35 2.92 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.57 6.70 -51.92 -0.35 0.22 16 42 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.13 0.91 5.81 -52.49 -0.30 0.60 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.13 0.89 7.15 -52.48 -0.38 0.51 16 48 H 0.09 0.78 6.96 -51.93 -0.36 0.42 16 49 H 0.05 0.37 7.75 -51.93 -0.40 -0.03 16 50 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 51 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -31.53 404.76 -12.54 -44.07 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.34 Total: 11.41 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -6.55 Total: -23.15 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.42 Total: -45.82 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.37 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.40 Total: 19.77 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.53 -12.54 -44.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096406972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.151 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds