Wall clock time and date at job start Tue Mar 31 2020 07:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86798 * 119.99779 * 2 1 4 4 H 1.48505 * 109.47195 * 86.41323 * 3 2 1 5 5 H 1.48504 * 109.47561 * 326.41356 * 3 2 1 6 6 H 1.48501 * 109.47340 * 206.41180 * 3 2 1 7 7 C 1.39895 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07987 * 119.99961 * 36.52270 * 7 2 1 9 9 C 1.41155 * 119.99593 * 216.52673 * 7 2 1 10 10 C 1.40872 * 120.16435 * 22.84294 * 9 7 2 11 11 C 1.36376 * 119.82351 * 179.69059 * 10 9 7 12 12 C 1.39472 * 120.17324 * 0.58708 * 11 10 9 13 13 N 1.39242 * 119.83919 * 179.68970 * 12 11 10 14 14 C 1.34777 * 119.99700 * 34.41810 * 13 12 11 15 15 O 1.21584 * 120.00257 * 5.34402 * 14 13 12 16 16 N 1.34777 * 120.00024 * 185.34076 * 14 13 12 17 17 C 1.46502 * 120.00219 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.50285 * 34.92028 * 17 16 14 19 19 C 1.53120 * 109.50156 * 274.80487 * 17 16 14 20 20 C 1.53121 * 109.15940 * 182.40264 * 19 17 16 21 21 C 1.53037 * 109.27686 * 57.65200 * 20 19 17 22 22 N 1.46842 * 109.52613 * 300.82290 * 21 20 19 23 23 C 1.39673 * 111.00244 * 185.84103 * 22 21 20 24 24 C 1.38909 * 120.07359 * 235.51344 * 23 22 21 25 25 C 1.38112 * 119.92277 * 179.76904 * 24 23 22 26 26 C 1.38284 * 120.07475 * 0.50204 * 25 24 23 27 27 C 1.38290 * 120.14846 * 359.74998 * 26 25 24 28 28 C 1.38104 * 120.07545 * 359.97438 * 27 26 25 29 29 C 1.46848 * 111.20011 * 61.74116 * 22 21 20 30 30 C 1.39479 * 120.33126 * 359.71335 * 12 11 10 31 31 C 1.36377 * 120.17139 * 359.97438 * 30 12 11 32 32 H 0.96996 * 120.00100 * 185.10733 * 1 2 3 33 33 H 1.08003 * 120.08920 * 359.97438 * 10 9 7 34 34 H 1.08007 * 119.91464 * 180.27570 * 11 10 9 35 35 H 0.96997 * 120.00268 * 214.42551 * 13 12 11 36 36 H 0.96999 * 119.99741 * 0.02562 * 16 14 13 37 37 H 1.09001 * 109.52345 * 302.30547 * 19 17 16 38 38 H 1.08999 * 109.52508 * 62.49712 * 19 17 16 39 39 H 1.09003 * 109.50516 * 297.71244 * 20 19 17 40 40 H 1.09003 * 109.53536 * 177.61242 * 20 19 17 41 41 H 1.09009 * 109.46094 * 180.80483 * 21 20 19 42 42 H 1.09003 * 109.46048 * 60.84074 * 21 20 19 43 43 H 1.07995 * 120.03812 * 359.97438 * 24 23 22 44 44 H 1.07990 * 119.96204 * 180.25538 * 25 24 23 45 45 H 1.07994 * 119.92942 * 179.76916 * 26 25 24 46 46 H 1.08000 * 119.96290 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.03291 * 180.02562 * 28 27 26 48 48 H 1.08996 * 109.46191 * 178.24437 * 29 22 21 49 49 H 1.08995 * 109.45045 * 58.26902 * 29 22 21 50 50 H 1.08004 * 119.91773 * 180.02562 * 30 12 11 51 51 H 1.08001 * 120.09091 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4144 2.0903 1.3974 5 1 1.4802 2.6297 -0.7745 6 1 3.5762 1.4196 -0.6228 7 6 2.0083 -1.2115 -0.0005 8 1 1.6274 -2.0546 -0.5575 9 6 3.2119 -1.3318 0.7270 10 6 3.4762 -0.4658 1.8062 11 6 4.6385 -0.5923 2.5084 12 6 5.5697 -1.5678 2.1528 13 7 6.7570 -1.6866 2.8705 14 6 6.7706 -1.4418 4.1958 15 8 5.7306 -1.2127 4.7824 16 7 7.9371 -1.4512 4.8708 17 6 7.9519 -1.1857 6.3115 18 1 7.0523 -1.5995 6.7670 19 6 7.9990 0.3257 6.5523 20 6 8.0749 0.5925 8.0582 21 6 9.3067 -0.1094 8.6343 22 7 9.2137 -1.5524 8.3787 23 6 10.2557 -2.2399 9.0052 24 6 11.0926 -3.0628 8.2622 25 6 12.1250 -3.7374 8.8841 26 6 12.3195 -3.6026 10.2465 27 6 11.4849 -2.7883 10.9900 28 6 10.4542 -2.1064 10.3736 29 6 9.1874 -1.8360 6.9382 30 6 5.3178 -2.4247 1.0815 31 6 4.1573 -2.3146 0.3738 32 1 -0.4850 -0.8367 0.0748 33 1 2.7583 0.2933 2.0798 34 1 4.8406 0.0680 3.3389 35 1 7.5742 -1.9453 2.4166 36 1 8.7668 -1.6337 4.4027 37 1 8.8783 0.7452 6.0634 38 1 7.0996 0.7876 6.1454 39 1 7.1771 0.2072 8.5417 40 1 8.1514 1.6654 8.2349 41 1 9.3558 0.0667 9.7089 42 1 10.2050 0.2862 8.1602 43 1 10.9383 -3.1723 7.1990 44 1 12.7785 -4.3740 8.3063 45 1 13.1251 -4.1341 10.7309 46 1 11.6393 -2.6855 12.0540 47 1 9.8031 -1.4703 10.9549 48 1 9.1496 -2.9139 6.7809 49 1 10.0861 -1.4322 6.4722 50 1 6.0434 -3.1780 0.8122 51 1 3.9634 -2.9791 -0.4552 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096406972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:00 Heat of formation + Delta-G solvation = 6.865392 kcal Electronic energy + Delta-G solvation = -31521.829601 eV Core-core repulsion = 27384.595776 eV Total energy + Delta-G solvation = -4137.233825 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.184 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.76729 -41.09291 -39.52856 -38.68223 -36.38561 -35.80654 -34.99420 -33.98574 -32.17861 -31.61223 -31.32724 -30.27747 -29.77660 -26.42001 -25.70485 -24.67424 -23.51829 -23.03431 -22.53811 -22.15762 -21.56644 -20.93820 -20.18391 -19.31654 -18.82882 -18.23589 -16.91898 -16.57679 -16.44491 -16.36881 -16.21420 -15.95553 -15.80517 -15.60497 -15.50563 -15.18757 -14.82879 -14.58583 -14.49403 -14.38997 -14.29849 -14.26199 -13.94489 -13.62027 -13.41910 -13.30765 -12.88519 -12.59127 -12.50016 -12.35832 -12.12371 -12.06736 -11.97365 -11.94837 -11.72747 -11.67460 -11.54147 -11.28497 -10.92737 -10.66169 -10.62993 -10.11938 -9.82773 -9.60185 -9.45670 -8.93193 -8.77664 -6.40025 0.47988 0.51635 0.76003 0.94119 1.39464 1.50430 1.65098 1.74130 2.15469 2.20278 2.56308 2.65890 2.96160 3.38184 3.52394 3.62744 3.72837 3.92701 3.94537 4.09694 4.15068 4.20054 4.29893 4.32682 4.37903 4.44427 4.46553 4.56943 4.60770 4.64571 4.73597 4.75584 4.80099 4.86444 4.99461 5.01432 5.07183 5.15653 5.18372 5.25093 5.29662 5.33382 5.43612 5.49869 5.51231 5.54878 5.65085 5.69360 5.86919 5.92526 5.97292 6.02226 6.12272 6.19364 6.35413 6.47750 6.69408 6.84239 7.16348 7.66846 7.85967 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.022111 B = 0.001724 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.006813 B =16239.250198 C =17003.100921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.029 3.971 3 Si 1.089 2.911 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.561 4.561 8 H 0.056 0.944 9 C 0.070 3.930 10 C -0.248 4.248 11 C -0.072 4.072 12 C 0.024 3.976 13 N -0.657 5.657 14 C 0.695 3.305 15 O -0.623 6.623 16 N -0.723 5.723 17 C 0.171 3.829 18 H 0.063 0.937 19 C -0.130 4.130 20 C -0.112 4.112 21 C 0.062 3.938 22 N -0.498 5.498 23 C 0.101 3.899 24 C -0.185 4.185 25 C -0.101 4.101 26 C -0.156 4.156 27 C -0.101 4.101 28 C -0.154 4.154 29 C 0.058 3.942 30 C -0.084 4.084 31 C -0.220 4.220 32 H 0.284 0.716 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.416 0.584 36 H 0.413 0.587 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.130 0.870 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.139 0.861 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.271 -2.034 18.202 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.190 4.190 3 Si 0.909 3.091 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.589 4.589 8 H 0.074 0.926 9 C 0.067 3.933 10 C -0.268 4.268 11 C -0.093 4.093 12 C -0.070 4.070 13 N -0.305 5.305 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.379 5.379 17 C 0.065 3.935 18 H 0.081 0.919 19 C -0.169 4.169 20 C -0.150 4.150 21 C -0.063 4.063 22 N -0.213 5.213 23 C 0.003 3.997 24 C -0.205 4.205 25 C -0.119 4.119 26 C -0.175 4.175 27 C -0.119 4.119 28 C -0.174 4.174 29 C -0.070 4.070 30 C -0.105 4.105 31 C -0.240 4.240 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.254 0.746 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.147 0.853 48 H 0.107 0.893 49 H 0.089 0.911 50 H 0.157 0.843 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 27.547 -0.347 18.814 33.360 hybrid contribution 0.344 -1.988 -0.840 2.185 sum 27.891 -2.335 17.974 33.262 Atomic orbital electron populations 1.70630 1.09271 1.32730 1.30784 1.28204 0.95273 1.06799 0.88733 0.83454 0.75719 0.71286 0.78675 1.19442 1.19228 1.18541 1.20440 1.07437 1.00153 1.30825 0.92593 1.17868 0.91989 0.92359 0.91077 1.20682 0.99834 1.05709 1.00593 1.20414 0.94359 0.96692 0.97801 1.16943 0.90138 1.00886 0.99055 1.41824 1.10633 1.72177 1.05889 1.16127 0.84275 0.78336 0.81680 1.90926 1.33109 1.57518 1.68727 1.44774 1.07448 1.76766 1.08960 1.20632 0.98770 0.95369 0.78717 0.91854 1.21981 1.02147 0.95382 0.97364 1.21563 0.98113 1.01300 0.94043 1.22308 0.97762 0.83845 1.02395 1.58825 1.41586 1.09854 1.11032 1.19088 0.89600 0.97061 0.93942 1.21521 0.96538 1.01876 1.00607 1.21307 0.97020 0.98299 0.95313 1.21396 1.01134 1.00580 0.94415 1.21309 0.94221 0.95593 1.00812 1.20982 1.00233 1.03420 0.92788 1.22323 0.96631 1.01551 0.86457 1.20435 0.97313 0.97132 0.95583 1.20738 0.95399 1.04305 1.03529 0.90542 0.89137 0.88042 0.74638 0.75041 0.90315 0.93604 0.92040 0.88957 0.88791 0.92794 0.84746 0.84368 0.84409 0.84111 0.85255 0.89263 0.91084 0.84318 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.13 13.66 21.82 0.30 -44.84 16 2 C 0.03 1.59 5.08 85.24 0.43 2.02 16 3 Si 1.09 49.71 25.90 68.60 1.78 51.49 16 4 H -0.27 -12.01 6.55 99.48 0.65 -11.36 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.56 -31.78 9.26 23.39 0.22 -31.56 16 8 H 0.06 3.30 8.06 -2.92 -0.02 3.28 16 9 C 0.07 3.73 5.17 -21.27 -0.11 3.62 16 10 C -0.25 -12.97 7.66 22.48 0.17 -12.80 16 11 C -0.07 -3.45 8.57 22.13 0.19 -3.26 16 12 C 0.02 0.97 6.27 38.56 0.24 1.21 16 13 N -0.66 -19.96 5.31 -316.79 -1.68 -21.64 16 14 C 0.70 22.36 8.25 179.05 1.48 23.84 16 15 O -0.62 -26.96 13.73 -3.98 -0.05 -27.01 16 16 N -0.72 -15.14 5.08 -457.57 -2.33 -17.47 16 17 C 0.17 3.58 2.62 45.04 0.12 3.69 16 18 H 0.06 1.82 7.58 -2.39 -0.02 1.81 16 19 C -0.13 -2.55 5.58 30.67 0.17 -2.38 16 20 C -0.11 -1.78 6.09 30.65 0.19 -1.59 16 21 C 0.06 0.83 5.26 86.33 0.45 1.29 16 22 N -0.50 -8.18 4.70 -695.41 -3.27 -11.44 16 23 C 0.10 1.61 5.64 38.21 0.22 1.83 16 24 C -0.18 -2.62 8.82 22.40 0.20 -2.42 16 25 C -0.10 -1.24 10.04 22.25 0.22 -1.02 16 26 C -0.16 -1.81 10.04 22.29 0.22 -1.59 16 27 C -0.10 -1.23 10.04 22.25 0.22 -1.00 16 28 C -0.15 -2.24 9.16 22.40 0.21 -2.04 16 29 C 0.06 0.87 3.62 86.32 0.31 1.18 16 30 C -0.08 -3.33 9.89 22.13 0.22 -3.11 16 31 C -0.22 -10.25 9.74 22.48 0.22 -10.03 16 32 H 0.28 15.58 8.73 -92.71 -0.81 14.77 16 33 H 0.09 4.84 5.15 -2.91 -0.01 4.83 16 34 H 0.10 4.90 6.47 -2.91 -0.02 4.88 16 35 H 0.42 8.61 8.83 -92.71 -0.82 7.79 16 36 H 0.41 5.25 8.62 -92.71 -0.80 4.45 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.09 6.70 -2.38 -0.02 1.07 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.13 1.55 5.81 -2.91 -0.02 1.54 16 44 H 0.14 1.12 8.06 -2.92 -0.02 1.10 16 45 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.13 1.65 7.15 -2.91 -0.02 1.63 16 48 H 0.09 1.35 6.96 -2.39 -0.02 1.33 16 49 H 0.07 0.79 7.75 -2.39 -0.02 0.77 16 50 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 51 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -71.94 404.76 -0.41 -72.35 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.74 Total: 32.70 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 5.59 Total: -34.13 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -6.98 Total: -95.40 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 1.78 Total: 51.49 kcal Total: -71.94 -0.41 -72.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096406972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.212 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds