Wall clock time and date at job start Tue Mar 31 2020 07:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35921 * 117.00147 * 2 1 4 4 C 1.38746 * 120.04349 * 359.72926 * 3 2 1 5 5 C 1.38122 * 119.95385 * 179.71967 * 4 3 2 6 6 C 1.38367 * 120.04143 * 0.55645 * 5 4 3 7 7 Br 1.89098 * 119.95316 * 179.74531 * 6 5 4 8 8 C 1.38324 * 120.09504 * 359.71881 * 6 5 4 9 9 C 1.38167 * 120.04060 * 0.02562 * 8 6 5 10 10 C 1.50706 * 120.02044 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47049 * 265.02367 * 10 9 8 12 12 C 1.50704 * 109.47422 * 179.97438 * 11 10 9 13 13 O 1.21290 * 119.99355 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00555 * 179.97438 * 12 11 10 15 15 C 1.37090 * 120.00400 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00007 * 322.48314 * 15 14 12 17 17 C 1.38953 * 120.00224 * 142.48017 * 15 14 12 18 18 N 1.31411 * 119.99986 * 157.59250 * 17 15 14 19 19 Si 1.86795 * 119.99979 * 337.59513 * 17 15 14 20 20 H 1.48498 * 109.47332 * 95.70457 * 19 17 15 21 21 H 1.48498 * 109.47478 * 215.70872 * 19 17 15 22 22 H 1.48505 * 109.46949 * 335.70456 * 19 17 15 23 23 C 1.46502 * 119.99695 * 0.02562 * 14 12 11 24 24 C 1.47203 * 109.47334 * 83.79465 * 23 14 12 25 25 N 7.03765 * 138.14755 * 270.66601 * 2 1 3 26 26 H 1.08992 * 109.47068 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46723 * 299.99635 * 1 2 3 28 28 H 1.09003 * 109.47207 * 59.99512 * 1 2 3 29 29 H 1.08003 * 120.02221 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.98211 * 180.25250 * 5 4 3 31 31 H 1.07997 * 119.97824 * 180.02562 * 8 6 5 32 32 H 1.09004 * 109.46711 * 25.02279 * 10 9 8 33 33 H 1.08994 * 109.46946 * 145.01860 * 10 9 8 34 34 H 1.09004 * 109.47292 * 299.99556 * 11 10 9 35 35 H 1.08994 * 109.47661 * 59.99930 * 11 10 9 36 36 H 0.96998 * 119.99935 * 179.97438 * 18 17 15 37 37 H 1.09007 * 109.47098 * 203.79008 * 23 14 12 38 38 H 1.08998 * 109.47239 * 323.78879 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9204 3.6049 0.0002 6 6 3.3022 3.6762 0.0001 7 35 4.1607 5.3611 0.0008 8 6 4.0565 2.5167 0.0000 9 6 3.4311 1.2847 -0.0006 10 6 4.2534 0.0217 -0.0012 11 6 4.4267 -0.4732 -1.4385 12 6 5.2495 -1.7358 -1.4393 13 8 5.6575 -2.1943 -0.3932 14 7 5.5319 -2.3554 -2.6024 15 6 6.2808 -3.5037 -2.6031 16 1 7.1055 -3.6109 -1.9142 17 6 5.9787 -4.5296 -3.4903 18 7 6.8993 -5.4090 -3.8158 19 14 4.2641 -4.6587 -4.2201 20 1 4.2415 -3.9999 -5.5507 21 1 3.8962 -6.0896 -4.3698 22 1 3.2912 -3.9892 -3.3197 23 6 5.0394 -1.8013 -3.8659 24 6 5.9608 -0.7532 -4.3343 25 7 6.6711 0.0546 -4.6953 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 0.2128 2.3200 -0.0105 30 1 1.3333 4.5114 -0.0001 31 1 5.1349 2.5746 0.0003 32 1 5.2321 0.2252 0.4335 33 1 3.7461 -0.7424 0.5876 34 1 3.4480 -0.6767 -1.8732 35 1 4.9340 0.2909 -2.0273 36 1 6.6883 -6.1254 -4.4348 37 1 4.9812 -2.5938 -4.6121 38 1 4.0489 -1.3726 -3.7132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096416956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:25 Heat of formation + Delta-G solvation = -4.138596 kcal Electronic energy + Delta-G solvation = -24236.785290 eV Core-core repulsion = 20512.828909 eV Total energy + Delta-G solvation = -3723.956380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 366.037 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57342 -39.09915 -37.74673 -36.32165 -34.85324 -33.98045 -32.22189 -31.84924 -30.09652 -29.09249 -27.76170 -27.34435 -25.83575 -23.70188 -22.30331 -21.12865 -19.04729 -18.47931 -18.24212 -16.81372 -16.65604 -16.38415 -15.96075 -15.54335 -15.38599 -14.76069 -14.69458 -14.10795 -13.97395 -13.64814 -13.35015 -13.25642 -13.12485 -12.65257 -12.53219 -12.25038 -12.19568 -12.04130 -11.83616 -11.75677 -11.67151 -11.49138 -11.03431 -10.91461 -10.66694 -10.52448 -10.47096 -10.41184 -10.03623 -9.26194 -9.17156 -8.69551 -8.26601 -8.04961 -6.50360 -4.11151 0.95486 1.00786 1.48917 2.89253 3.02974 3.04242 3.09691 3.14792 3.25182 3.34480 3.55965 4.02383 4.27696 4.43327 4.49780 4.53502 4.79615 4.90533 4.90946 4.96921 5.04148 5.24090 5.26698 5.32412 5.40009 5.42708 5.51423 5.67700 5.72750 5.81190 5.92843 5.97274 5.98108 6.25763 6.46946 6.52339 7.11134 7.37490 7.96284 8.13766 8.32977 8.81342 9.14683 9.55680 10.61394 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.002905 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.790641 B = 9634.827126 C =10776.685981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.147 3.853 4 C -0.204 4.204 5 C -0.058 4.058 6 C -0.126 4.126 7 Br -0.057 7.057 8 C -0.050 4.050 9 C -0.100 4.100 10 C -0.054 4.054 11 C -0.135 4.135 12 C 0.478 3.522 13 O -0.546 6.546 14 N -0.465 5.465 15 C -0.324 4.324 16 H 0.109 0.891 17 C 0.062 3.938 18 N -0.855 5.855 19 Si 0.859 3.141 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.255 1.255 23 C 0.179 3.821 24 C 0.206 3.794 25 N -0.441 5.441 26 H 0.103 0.897 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.276 0.724 37 H 0.114 0.886 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 18.200 5.941 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.101 3.899 4 C -0.224 4.224 5 C -0.078 4.078 6 C -0.205 4.205 7 Br 0.028 6.972 8 C -0.069 4.069 9 C -0.102 4.102 10 C -0.092 4.092 11 C -0.176 4.176 12 C 0.267 3.733 13 O -0.425 6.425 14 N -0.188 5.188 15 C -0.450 4.450 16 H 0.127 0.873 17 C -0.145 4.145 18 N -0.490 5.490 19 Si 0.685 3.315 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.179 1.179 23 C 0.052 3.948 24 C -0.113 4.113 25 N -0.120 5.120 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.487 19.380 5.866 24.897 hybrid contribution -1.584 -0.739 -0.566 1.838 sum -16.072 18.641 5.299 25.177 Atomic orbital electron populations 1.23130 0.78280 1.04411 1.01242 1.86199 1.21343 1.26148 1.87796 1.18986 0.91845 0.84482 0.94590 1.21195 1.00253 0.91674 1.09236 1.20812 0.92336 0.97845 0.96775 1.21597 0.94859 0.91406 1.12681 1.96693 1.79722 1.22835 1.97952 1.20936 1.00362 0.89565 0.96063 1.19419 0.90703 0.95933 1.04112 1.20167 0.99512 0.92879 0.96611 1.21675 1.00968 0.96826 0.98098 1.20306 0.82818 0.86273 0.83898 1.90585 1.54269 1.67103 1.30540 1.43641 1.49727 1.23886 1.01583 1.19060 1.11903 0.91104 1.22980 0.87322 1.25375 0.97252 0.95459 0.96377 1.69756 1.32225 1.15721 1.31273 0.87205 0.86215 0.78868 0.79214 1.19740 1.20616 1.17868 1.19565 0.93120 0.91606 0.90531 1.30004 0.94513 0.93707 0.93119 1.81003 1.09533 1.12309 1.09125 0.87862 0.92610 0.92514 0.84665 0.85001 0.84217 0.90072 0.89293 0.89413 0.90303 0.91324 0.86866 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.48 9.63 -19.49 -0.19 -3.66 16 3 C 0.15 1.70 6.66 -39.22 -0.26 1.44 16 4 C -0.20 -1.92 9.04 -39.44 -0.36 -2.28 16 5 C -0.06 -0.55 9.78 -39.58 -0.39 -0.94 16 6 C -0.13 -1.38 6.22 -39.50 -0.25 -1.63 16 7 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.88 16 8 C -0.05 -0.59 9.42 -39.58 -0.37 -0.96 16 9 C -0.10 -1.27 5.15 -104.48 -0.54 -1.81 16 10 C -0.05 -0.80 4.36 -27.88 -0.12 -0.92 16 11 C -0.14 -2.16 4.29 -27.88 -0.12 -2.28 16 12 C 0.48 10.24 7.56 -10.99 -0.08 10.16 16 13 O -0.55 -13.69 15.85 5.55 0.09 -13.60 16 14 N -0.46 -10.38 2.15 -117.93 -0.25 -10.64 16 15 C -0.32 -8.61 9.36 -14.94 -0.14 -8.75 16 16 H 0.11 3.30 7.91 -52.49 -0.42 2.89 16 17 C 0.06 1.61 5.26 -17.47 -0.09 1.52 16 18 N -0.85 -23.54 13.96 55.50 0.77 -22.76 16 19 Si 0.86 18.11 25.05 -169.99 -4.26 13.86 16 20 H -0.27 -5.18 6.69 56.52 0.38 -4.80 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.25 -5.11 7.11 56.52 0.40 -4.70 16 23 C 0.18 3.25 4.27 -6.83 -0.03 3.22 16 24 C 0.21 3.90 15.00 -20.80 -0.31 3.59 16 25 N -0.44 -8.94 18.53 42.10 0.78 -8.16 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 28 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 29 H 0.14 0.91 6.30 -52.48 -0.33 0.58 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 33 H 0.09 1.42 7.65 -51.93 -0.40 1.02 16 34 H 0.09 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 36 H 0.28 7.00 8.31 -40.82 -0.34 6.67 16 37 H 0.11 2.11 3.62 -51.93 -0.19 1.92 16 38 H 0.11 1.48 6.70 -51.93 -0.35 1.13 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -31.49 348.91 -6.25 -37.74 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.09 Total: 3.34 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.07 Total: 1.51 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 1.30 Total: -41.56 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.10 Total: -17.27 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -4.26 Total: 13.86 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.49 -6.25 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096416956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.598 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds