Wall clock time and date at job start Tue Mar 31 2020 07:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99904 * 2 1 4 4 C 1.50692 * 109.47303 * 293.95248 * 3 2 1 5 5 O 1.21294 * 120.00249 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00382 * 180.02562 * 4 3 2 7 7 C 1.37104 * 120.00038 * 180.02562 * 6 4 3 8 8 H 1.07992 * 119.99965 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99507 * 180.02562 * 7 6 4 10 10 N 1.31412 * 120.00364 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99510 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47262 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47067 * 119.99885 * 11 9 7 14 14 H 1.48500 * 109.46631 * 239.99460 * 11 9 7 15 15 C 1.46901 * 110.99966 * 123.95036 * 2 1 3 16 16 C 1.53001 * 109.46876 * 77.02555 * 15 2 1 17 17 C 1.50700 * 115.56308 * 79.13937 * 16 15 2 18 18 C 1.38247 * 119.99071 * 210.50721 * 17 16 15 19 19 C 1.38222 * 120.00681 * 179.76441 * 18 17 16 20 20 C 1.38319 * 119.99093 * 0.51205 * 19 18 17 21 21 Br 1.89102 * 120.01015 * 179.76713 * 20 19 18 22 22 C 1.38324 * 119.98121 * 359.74005 * 20 19 18 23 23 C 1.38222 * 119.99004 * 0.02562 * 22 20 19 24 24 C 1.53004 * 117.50236 * 293.45109 * 16 15 2 25 25 C 1.53004 * 60.03146 * 252.49566 * 24 16 15 26 26 H 1.09001 * 109.47171 * 286.00323 * 1 2 3 27 27 H 1.08997 * 109.47058 * 46.00508 * 1 2 3 28 28 H 1.09003 * 109.47199 * 166.00843 * 1 2 3 29 29 H 1.08999 * 109.47649 * 53.95516 * 3 2 1 30 30 H 1.09006 * 109.47120 * 173.95283 * 3 2 1 31 31 H 0.97003 * 119.99789 * 359.97438 * 6 4 3 32 32 H 0.97003 * 120.00063 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47620 * 317.02668 * 15 2 1 34 34 H 1.09002 * 109.47597 * 197.02131 * 15 2 1 35 35 H 1.07994 * 119.99205 * 0.02562 * 18 17 16 36 36 H 1.08005 * 120.00275 * 180.27676 * 19 18 17 37 37 H 1.08001 * 120.00628 * 179.97438 * 22 20 19 38 38 H 1.08001 * 119.99306 * 180.02562 * 23 22 20 39 39 H 1.09004 * 117.49309 * 359.97438 * 24 16 15 40 40 H 1.08998 * 117.50423 * 144.99377 * 24 16 15 41 41 H 1.09003 * 117.49558 * 107.49785 * 25 24 16 42 42 H 1.08995 * 117.49754 * 252.51285 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0047 1.4456 -2.1408 6 7 2.0189 3.3198 -1.5237 7 6 1.6922 3.9347 -2.7048 8 1 1.1293 3.3991 -3.4548 9 6 2.0865 5.2467 -2.9372 10 7 2.7720 5.8983 -2.0248 11 14 1.6409 6.0846 -4.5462 12 1 0.8718 5.1427 -5.3985 13 1 0.8150 7.2866 -4.2661 14 1 2.8821 6.4907 -5.2531 15 6 1.9954 -0.7659 1.1376 16 6 1.8758 -2.2627 0.8438 17 6 2.9352 -2.8340 -0.0631 18 6 2.6371 -3.9050 -0.8849 19 6 3.6071 -4.4261 -1.7204 20 6 4.8791 -3.8828 -1.7263 21 35 6.2084 -4.5997 -2.8643 22 6 5.1784 -2.8147 -0.9001 23 6 4.2064 -2.2910 -0.0684 24 6 0.4677 -2.8529 0.7446 25 6 1.3421 -3.1624 1.9613 26 1 -0.3633 0.2833 0.9878 27 1 -0.3633 0.7138 -0.7393 28 1 -0.3634 -0.9972 -0.2485 29 1 1.5611 1.9274 0.8309 30 1 3.0797 1.3444 0.1083 31 1 2.5242 3.8011 -0.8499 32 1 3.0469 6.8143 -2.1869 33 1 1.4238 -0.5248 2.0338 34 1 3.0430 -0.5092 1.2950 35 1 1.6450 -4.3316 -0.8772 36 1 3.3729 -5.2599 -2.3657 37 1 6.1715 -2.3904 -0.9041 38 1 4.4399 -1.4567 0.5764 39 1 -0.3735 -2.1749 0.8891 40 1 0.3074 -3.6541 0.0231 41 1 1.0762 -2.6879 2.9060 42 1 1.7574 -4.1670 2.0402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:30 Heat of formation + Delta-G solvation = 33.679179 kcal Electronic energy + Delta-G solvation = -24436.384280 eV Core-core repulsion = 20849.900896 eV Total energy + Delta-G solvation = -3586.483384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.20098 -38.57665 -37.56938 -35.38503 -33.77484 -32.17052 -31.22567 -31.18740 -29.30149 -28.10965 -27.58937 -24.78043 -23.22514 -23.01201 -22.37074 -21.79481 -19.45648 -19.10823 -17.82507 -17.23672 -16.07335 -15.61771 -15.27216 -15.10082 -14.96185 -14.59805 -14.52333 -14.03947 -13.75761 -13.60291 -13.43806 -13.26334 -13.10186 -12.30488 -12.18893 -11.94593 -11.72873 -11.55964 -11.43508 -11.29962 -11.22329 -11.03113 -10.92713 -10.89150 -10.37267 -10.32827 -10.24595 -10.17870 -10.09118 -9.46108 -9.07140 -8.49463 -8.37431 -7.94566 -7.82654 -6.39885 -3.80359 1.02307 1.26617 1.55801 3.17576 3.27980 3.33718 3.36331 3.74942 3.93500 4.14466 4.30450 4.40282 4.56279 4.68709 4.80261 4.90661 4.98603 5.10516 5.20382 5.26771 5.31822 5.46174 5.50167 5.54202 5.66521 5.69734 5.74513 5.76119 5.78960 5.87213 5.96449 6.00546 6.04538 6.15018 6.24830 6.30908 6.51016 6.55593 6.74704 7.30568 7.41836 7.57371 8.09059 8.64348 9.20678 9.57090 10.09176 10.78049 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.002721 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.044534 B =10289.591536 C =12649.019288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.511 5.511 3 C 0.045 3.955 4 C 0.445 3.555 5 O -0.575 6.575 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.928 3.072 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.090 3.910 16 C -0.080 4.080 17 C -0.004 4.004 18 C -0.116 4.116 19 C -0.088 4.088 20 C -0.097 4.097 21 Br -0.062 7.062 22 C -0.086 4.086 23 C -0.102 4.102 24 C -0.169 4.169 25 C -0.164 4.164 26 H 0.011 0.989 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.391 0.609 32 H 0.270 0.730 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -21.287 8.478 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.234 5.234 3 C -0.086 4.086 4 C 0.230 3.770 5 O -0.459 6.459 6 N -0.203 5.203 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.755 3.245 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.038 4.038 16 C -0.080 4.080 17 C -0.004 4.004 18 C -0.134 4.134 19 C -0.107 4.107 20 C -0.176 4.176 21 Br 0.023 6.977 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.206 4.206 25 C -0.202 4.202 26 H 0.030 0.970 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.224 0.776 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.357 -21.983 7.027 23.487 hybrid contribution -0.334 1.472 0.541 1.604 sum 4.024 -20.510 7.568 22.229 Atomic orbital electron populations 1.22762 0.86876 1.03653 0.99716 1.61415 1.08541 1.12281 1.41150 1.21888 1.00494 0.89129 0.97121 1.19731 0.85395 0.82888 0.88952 1.90504 1.43728 1.64608 1.47028 1.41880 1.49552 1.10817 1.18059 1.19740 1.32708 0.95423 0.94747 0.87907 1.25245 0.96877 0.96667 0.99180 1.69619 1.38224 1.12196 1.34400 0.85822 0.78221 0.79020 0.81426 1.19226 1.20807 1.20757 1.21687 1.00488 0.90103 0.91543 1.20094 0.94241 0.93878 0.99828 1.19012 0.93056 0.93665 0.94697 1.21013 0.99204 0.96931 0.96286 1.21008 0.91337 0.99738 0.98660 1.21698 0.94214 1.00964 1.00774 1.96682 1.51947 1.84810 1.64220 1.21067 1.00133 0.94515 0.94849 1.20954 0.92262 0.99681 0.99143 1.23307 0.93778 1.03212 1.00271 1.23169 1.03517 1.00137 0.93344 0.97014 0.89172 0.91090 0.93627 0.89589 0.77563 0.91983 0.94232 0.90390 0.85252 0.85294 0.85130 0.85182 0.87547 0.88388 0.88448 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.35 60.06 0.50 0.78 16 2 N -0.51 -8.25 4.42 -244.38 -1.08 -9.33 16 3 C 0.04 0.79 5.42 -4.98 -0.03 0.77 16 4 C 0.45 10.47 7.37 -10.99 -0.08 10.38 16 5 O -0.57 -15.48 14.02 5.55 0.08 -15.40 16 6 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 11 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.09 1.10 4.81 -3.82 -0.02 1.08 16 16 C -0.08 -0.88 2.17 -155.62 -0.34 -1.22 16 17 C 0.00 -0.05 5.48 -104.62 -0.57 -0.62 16 18 C -0.12 -1.32 9.36 -39.58 -0.37 -1.69 16 19 C -0.09 -1.00 9.79 -39.56 -0.39 -1.39 16 20 C -0.10 -1.17 6.22 -39.52 -0.25 -1.42 16 21 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 16 22 C -0.09 -1.03 9.79 -39.56 -0.39 -1.41 16 23 C -0.10 -1.22 9.32 -39.59 -0.37 -1.59 16 24 C -0.17 -1.67 8.21 -26.73 -0.22 -1.89 16 25 C -0.16 -1.42 9.86 -26.69 -0.26 -1.68 16 26 H 0.01 0.16 7.85 -51.93 -0.41 -0.25 16 27 H 0.09 1.77 5.79 -51.93 -0.30 1.47 16 28 H 0.07 1.02 5.11 -51.93 -0.27 0.75 16 29 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.09 1.37 7.82 -51.93 -0.41 0.97 16 31 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.04 0.44 7.61 -51.93 -0.39 0.05 16 34 H 0.08 0.89 5.80 -51.93 -0.30 0.59 16 35 H 0.13 1.25 5.94 -52.49 -0.31 0.94 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.40 6.33 -52.49 -0.33 1.07 16 39 H 0.11 1.07 5.77 -51.93 -0.30 0.77 16 40 H 0.10 0.90 6.10 -51.93 -0.32 0.58 16 41 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -31.23 360.64 -10.52 -41.75 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.28 Total: 10.52 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.02 Total: -7.85 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.41 Total: -47.63 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.23 -10.52 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.426 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds