Wall clock time and date at job start Tue Mar 31 2020 07:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99904 * 2 1 4 4 C 1.50692 * 109.47303 * 293.95248 * 3 2 1 5 5 O 1.21294 * 120.00249 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00382 * 180.02562 * 4 3 2 7 7 C 1.37104 * 120.00038 * 180.02562 * 6 4 3 8 8 H 1.07992 * 119.99965 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99507 * 180.02562 * 7 6 4 10 10 N 1.31412 * 120.00364 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99510 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47262 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47067 * 119.99885 * 11 9 7 14 14 H 1.48500 * 109.46631 * 239.99460 * 11 9 7 15 15 C 1.46901 * 110.99966 * 123.95036 * 2 1 3 16 16 C 1.53001 * 109.46876 * 77.02555 * 15 2 1 17 17 C 1.50700 * 115.56308 * 79.13937 * 16 15 2 18 18 C 1.38247 * 119.99071 * 210.50721 * 17 16 15 19 19 C 1.38222 * 120.00681 * 179.76441 * 18 17 16 20 20 C 1.38319 * 119.99093 * 0.51205 * 19 18 17 21 21 Br 1.89102 * 120.01015 * 179.76713 * 20 19 18 22 22 C 1.38324 * 119.98121 * 359.74005 * 20 19 18 23 23 C 1.38222 * 119.99004 * 0.02562 * 22 20 19 24 24 C 1.53004 * 117.50236 * 293.45109 * 16 15 2 25 25 C 1.53004 * 60.03146 * 252.49566 * 24 16 15 26 26 H 1.09001 * 109.47171 * 286.00323 * 1 2 3 27 27 H 1.08997 * 109.47058 * 46.00508 * 1 2 3 28 28 H 1.09003 * 109.47199 * 166.00843 * 1 2 3 29 29 H 1.08999 * 109.47649 * 53.95516 * 3 2 1 30 30 H 1.09006 * 109.47120 * 173.95283 * 3 2 1 31 31 H 0.97003 * 119.99789 * 359.97438 * 6 4 3 32 32 H 0.97003 * 120.00063 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47620 * 317.02668 * 15 2 1 34 34 H 1.09002 * 109.47597 * 197.02131 * 15 2 1 35 35 H 1.07994 * 119.99205 * 0.02562 * 18 17 16 36 36 H 1.08005 * 120.00275 * 180.27676 * 19 18 17 37 37 H 1.08001 * 120.00628 * 179.97438 * 22 20 19 38 38 H 1.08001 * 119.99306 * 180.02562 * 23 22 20 39 39 H 1.09004 * 117.49309 * 359.97438 * 24 16 15 40 40 H 1.08998 * 117.50423 * 144.99377 * 24 16 15 41 41 H 1.09003 * 117.49558 * 107.49785 * 25 24 16 42 42 H 1.08995 * 117.49754 * 252.51285 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0047 1.4456 -2.1408 6 7 2.0189 3.3198 -1.5237 7 6 1.6922 3.9347 -2.7048 8 1 1.1293 3.3991 -3.4548 9 6 2.0865 5.2467 -2.9372 10 7 2.7720 5.8983 -2.0248 11 14 1.6409 6.0846 -4.5462 12 1 0.8718 5.1427 -5.3985 13 1 0.8150 7.2866 -4.2661 14 1 2.8821 6.4907 -5.2531 15 6 1.9954 -0.7659 1.1376 16 6 1.8758 -2.2627 0.8438 17 6 2.9352 -2.8340 -0.0631 18 6 2.6371 -3.9050 -0.8849 19 6 3.6071 -4.4261 -1.7204 20 6 4.8791 -3.8828 -1.7263 21 35 6.2084 -4.5997 -2.8643 22 6 5.1784 -2.8147 -0.9001 23 6 4.2064 -2.2910 -0.0684 24 6 0.4677 -2.8529 0.7446 25 6 1.3421 -3.1624 1.9613 26 1 -0.3633 0.2833 0.9878 27 1 -0.3633 0.7138 -0.7393 28 1 -0.3634 -0.9972 -0.2485 29 1 1.5611 1.9274 0.8309 30 1 3.0797 1.3444 0.1083 31 1 2.5242 3.8011 -0.8499 32 1 3.0469 6.8143 -2.1869 33 1 1.4238 -0.5248 2.0338 34 1 3.0430 -0.5092 1.2950 35 1 1.6450 -4.3316 -0.8772 36 1 3.3729 -5.2599 -2.3657 37 1 6.1715 -2.3904 -0.9041 38 1 4.4399 -1.4567 0.5764 39 1 -0.3735 -2.1749 0.8891 40 1 0.3074 -3.6541 0.0231 41 1 1.0762 -2.6879 2.9060 42 1 1.7574 -4.1670 2.0402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096421180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:30 Heat of formation + Delta-G solvation = 15.125515 kcal Electronic energy + Delta-G solvation = -24437.188827 eV Core-core repulsion = 20849.900896 eV Total energy + Delta-G solvation = -3587.287931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10204 -40.19444 -38.67166 -36.65768 -35.71944 -33.25334 -33.02598 -32.06488 -30.16813 -29.57219 -28.66899 -26.65691 -24.29352 -23.83360 -23.30486 -22.79125 -20.94250 -20.30338 -19.83296 -18.14585 -17.68167 -16.72310 -16.55579 -16.28278 -16.22027 -15.95888 -15.70526 -15.31382 -15.29130 -14.92049 -14.44604 -14.37357 -14.22361 -13.70306 -13.48343 -13.21768 -13.07423 -12.92634 -12.74862 -12.46006 -12.39655 -12.32096 -12.11840 -12.02911 -11.97571 -11.81365 -11.44925 -11.24341 -11.08223 -10.90274 -10.22716 -9.97186 -9.94645 -9.32952 -9.10555 -8.45329 -5.93371 0.14619 0.39193 0.67381 1.36390 1.41367 1.55336 2.08943 2.28344 2.49616 2.75805 3.21069 3.23604 3.48037 3.60822 3.75090 3.86070 3.97087 4.06253 4.16389 4.29283 4.35727 4.39370 4.47980 4.54771 4.58193 4.65667 4.72561 4.78741 4.84039 4.90228 4.93172 5.01720 5.07969 5.21196 5.29047 5.33504 5.39739 5.42581 5.64139 5.89607 5.92393 6.12469 6.28908 6.63311 7.15574 7.59617 8.16110 8.72394 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.002721 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.044534 B =10289.591536 C =12649.019288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.057 3.943 4 C 0.443 3.557 5 O -0.613 6.613 6 N -0.577 5.577 7 C -0.329 4.329 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.921 5.921 11 Si 0.990 3.010 12 H -0.275 1.275 13 H -0.270 1.270 14 H -0.272 1.272 15 C 0.091 3.909 16 C -0.097 4.097 17 C -0.013 4.013 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.113 4.113 21 Br -0.058 7.058 22 C -0.097 4.097 23 C -0.115 4.115 24 C -0.175 4.175 25 C -0.138 4.138 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.395 0.605 32 H 0.277 0.723 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 -21.856 9.746 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.074 4.074 4 C 0.230 3.770 5 O -0.499 6.499 6 N -0.215 5.215 7 C -0.459 4.459 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.563 5.563 11 Si 0.814 3.186 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.197 1.197 15 C -0.036 4.036 16 C -0.097 4.097 17 C -0.014 4.014 18 C -0.142 4.142 19 C -0.114 4.114 20 C -0.192 4.192 21 Br 0.027 6.973 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.211 4.211 25 C -0.176 4.176 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.365 -22.558 8.328 24.439 hybrid contribution -0.344 1.574 0.170 1.621 sum 4.020 -20.984 8.498 22.993 Atomic orbital electron populations 1.22645 0.87052 1.03182 0.99490 1.61384 1.08621 1.11470 1.43834 1.21752 1.01849 0.89962 0.93829 1.20816 0.83556 0.82128 0.90500 1.90478 1.45015 1.65348 1.49049 1.41948 1.50237 1.11676 1.17602 1.19660 1.34159 0.96372 0.95716 0.90526 1.25988 0.96360 0.96637 1.02254 1.69675 1.38289 1.12641 1.35649 0.84916 0.78248 0.77930 0.77525 1.19921 1.19536 1.19690 1.21763 1.01036 0.90208 0.90574 1.20076 0.94659 0.93450 1.01562 1.19241 0.93351 0.93830 0.94952 1.21251 0.99901 0.96977 0.96084 1.21250 0.91191 1.00103 0.98834 1.21874 0.94744 1.01364 1.01188 1.96670 1.51811 1.84721 1.64089 1.21259 1.00696 0.94706 0.95013 1.21152 0.92494 1.00171 0.99519 1.23358 0.93080 1.03299 1.01409 1.23229 1.01292 0.99969 0.93075 0.94850 0.93544 0.89766 0.91552 0.87574 0.77104 0.91386 0.92457 0.89517 0.83758 0.83931 0.84371 0.84274 0.87737 0.87949 0.86959 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 8.35 127.69 1.07 1.80 16 2 N -0.53 -16.34 4.42 -927.08 -4.10 -20.43 16 3 C 0.06 1.95 5.42 85.56 0.46 2.41 16 4 C 0.44 21.12 7.37 87.65 0.65 21.76 16 5 O -0.61 -34.06 14.02 -3.07 -0.04 -34.10 16 6 N -0.58 -29.79 5.29 -306.99 -1.62 -31.41 16 7 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 10 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 11 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 C 0.09 1.99 4.81 86.30 0.42 2.41 16 16 C -0.10 -1.91 2.17 -52.90 -0.11 -2.02 16 17 C -0.01 -0.30 5.48 -19.86 -0.11 -0.41 16 18 C -0.12 -2.65 9.36 22.27 0.21 -2.44 16 19 C -0.09 -2.06 9.79 22.29 0.22 -1.84 16 20 C -0.11 -2.64 6.22 22.31 0.14 -2.50 16 21 Br -0.06 -1.25 33.70 -20.37 -0.69 -1.94 16 22 C -0.10 -2.26 9.79 22.29 0.22 -2.05 16 23 C -0.11 -2.63 9.32 22.27 0.21 -2.43 16 24 C -0.17 -3.02 8.21 30.60 0.25 -2.77 16 25 C -0.14 -1.93 9.86 30.62 0.30 -1.63 16 26 H 0.03 0.86 7.85 -2.39 -0.02 0.84 16 27 H 0.05 1.84 5.79 -2.39 -0.01 1.83 16 28 H 0.08 2.32 5.11 -2.39 -0.01 2.31 16 29 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 30 H 0.11 3.19 7.82 -2.38 -0.02 3.17 16 31 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 32 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.06 1.07 7.61 -2.39 -0.02 1.05 16 34 H 0.09 1.73 5.80 -2.39 -0.01 1.72 16 35 H 0.14 2.53 5.94 -2.91 -0.02 2.52 16 36 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.14 2.79 6.33 -2.91 -0.02 2.77 16 39 H 0.10 1.85 5.77 -2.38 -0.01 1.84 16 40 H 0.10 1.66 6.10 -2.39 -0.01 1.64 16 41 H 0.11 1.27 8.09 -2.39 -0.02 1.25 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -68.18 360.64 1.38 -66.80 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.33 Total: 33.32 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 5.19 Total: -8.01 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -5.44 Total: -101.56 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.04 Total: -34.10 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.69 Total: -1.94 kcal Total: -68.18 1.38 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.926 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds