Wall clock time and date at job start Tue Mar 31 2020 07:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36898 * 120.00441 * 2 1 4 4 H 1.08001 * 119.99770 * 201.27042 * 3 2 1 5 5 C 1.39020 * 120.00136 * 21.26758 * 3 2 1 6 6 N 1.31381 * 119.99949 * 15.98944 * 5 3 2 7 7 Si 1.86805 * 120.00243 * 195.99329 * 5 3 2 8 8 H 1.48500 * 109.46896 * 94.98396 * 7 5 3 9 9 H 1.48497 * 109.47125 * 214.98288 * 7 5 3 10 10 H 1.48504 * 109.46831 * 334.98534 * 7 5 3 11 11 C 1.34784 * 119.99568 * 180.02562 * 2 1 3 12 12 O 1.21617 * 119.99894 * 174.46193 * 11 2 1 13 13 C 1.47503 * 120.00019 * 354.45615 * 11 2 1 14 14 C 1.40328 * 120.49944 * 329.97735 * 13 11 2 15 15 C 1.36950 * 118.46726 * 180.02562 * 14 13 11 16 16 C 1.39173 * 119.40052 * 0.02562 * 15 14 13 17 17 O 1.35489 * 119.51594 * 179.97438 * 16 15 14 18 18 C 1.35913 * 118.00481 * 175.20131 * 17 16 15 19 19 C 1.38751 * 120.05236 * 265.95088 * 18 17 16 20 20 C 1.38147 * 119.97977 * 179.74628 * 19 18 17 21 21 C 1.38269 * 120.08856 * 0.54660 * 20 19 18 22 22 C 1.38356 * 120.11109 * 359.70384 * 21 20 19 23 23 Cl 1.73604 * 119.99023 * 180.02562 * 22 21 20 24 24 C 1.38368 * 120.02202 * 0.02562 * 22 21 20 25 25 Cl 1.73603 * 120.04879 * 179.97438 * 24 22 21 26 26 N 1.32455 * 120.97413 * 0.02562 * 16 15 14 27 27 C 1.31690 * 121.66460 * 359.97438 * 26 16 15 28 28 H 1.09006 * 109.47091 * 272.26819 * 1 2 3 29 29 H 1.08999 * 109.46891 * 32.26632 * 1 2 3 30 30 H 1.08993 * 109.47381 * 152.26849 * 1 2 3 31 31 H 0.97000 * 120.00092 * 179.97438 * 6 5 3 32 32 H 1.07996 * 120.76652 * 359.97438 * 14 13 11 33 33 H 1.07999 * 120.29842 * 180.02562 * 15 14 13 34 34 H 1.07994 * 120.01038 * 0.02562 * 19 18 17 35 35 H 1.07991 * 119.95433 * 180.29727 * 20 19 18 36 36 H 1.07995 * 119.94503 * 179.72605 * 21 20 19 37 37 H 1.08005 * 119.75257 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.1744 1.2173 -0.3393 5 6 1.5256 2.3485 0.4367 6 7 0.4141 2.2758 1.1335 7 14 2.2673 4.0147 0.0327 8 1 1.6302 4.5556 -1.1948 9 1 2.0337 4.9480 1.1639 10 1 3.7275 3.8650 -0.1922 11 6 2.1388 -1.1673 -0.0005 12 8 3.3507 -1.1698 -0.1022 13 6 1.4064 -2.4417 0.1223 14 6 0.1989 -2.5034 0.8346 15 6 -0.4462 -3.7083 0.9228 16 6 0.1095 -4.8272 0.3095 17 8 -0.5264 -6.0205 0.3957 18 6 -0.0103 -7.0702 -0.2963 19 6 -0.4838 -7.3651 -1.5668 20 6 0.0456 -8.4292 -2.2710 21 6 1.0392 -9.2081 -1.7071 22 6 1.5105 -8.9205 -0.4384 23 17 2.7585 -9.9001 0.2663 24 6 0.9874 -7.8524 0.2688 25 17 1.5778 -7.4914 1.8609 26 7 1.2514 -4.7431 -0.3564 27 6 1.9052 -3.6053 -0.4665 28 1 -0.3633 0.0407 1.0269 29 1 -0.3633 0.8690 -0.5486 30 1 -0.3634 -0.9095 -0.4782 31 1 -0.0211 3.0873 1.4385 32 1 -0.2119 -1.6213 1.3031 33 1 -1.3776 -3.7894 1.4634 34 1 -1.2628 -6.7603 -2.0068 35 1 -0.3199 -8.6555 -3.2617 36 1 1.4482 -10.0421 -2.2579 37 1 2.8341 -3.5719 -1.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096423632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:19 Heat of formation + Delta-G solvation = 13.726449 kcal Electronic energy + Delta-G solvation = -27013.036259 eV Core-core repulsion = 22809.158321 eV Total energy + Delta-G solvation = -4203.877938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 366.032 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.18759 -39.80784 -38.55622 -37.47371 -36.69976 -36.64287 -34.88750 -32.73715 -31.62674 -31.05726 -31.02265 -29.69702 -26.59605 -25.30378 -24.18229 -23.34634 -23.23196 -22.26480 -19.73207 -19.22858 -17.60574 -17.17458 -16.96111 -16.86620 -16.24555 -15.67862 -15.08006 -14.70158 -14.63151 -14.56513 -14.54246 -14.12927 -13.97640 -13.83596 -13.37481 -12.94241 -12.79230 -12.48745 -12.15788 -12.03053 -11.81670 -11.65921 -11.64603 -11.44483 -11.36396 -11.31016 -11.03087 -10.92181 -10.46430 -10.42468 -9.62231 -9.57620 -9.16229 -9.14280 -9.04766 -8.63085 -8.31178 -7.84554 -6.50394 -3.98448 0.52223 0.59943 1.11576 1.45619 1.53290 1.94470 2.65774 3.08614 3.18602 3.24225 3.31637 3.60136 4.01441 4.25097 4.31369 4.43465 4.47709 4.69235 4.76509 4.80521 4.95521 4.99263 5.23188 5.28422 5.29157 5.49505 5.59275 5.67130 5.80790 5.90167 6.04050 6.14033 6.17862 6.44893 6.61054 6.65814 6.99293 7.28057 7.42722 7.90597 8.02692 8.33049 9.03031 9.24193 9.82331 10.53635 Molecular weight = 366.03amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.002219 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.999082 B =12614.652187 C =12875.478910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.429 5.429 3 C -0.305 4.305 4 H 0.105 0.895 5 C 0.032 3.968 6 N -0.873 5.873 7 Si 0.929 3.071 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.481 3.519 12 O -0.586 6.586 13 C -0.172 4.172 14 C -0.031 4.031 15 C -0.183 4.183 16 C 0.305 3.695 17 O -0.243 6.243 18 C 0.125 3.875 19 C -0.103 4.103 20 C -0.092 4.092 21 C -0.100 4.100 22 C -0.023 4.023 23 Cl -0.045 7.045 24 C -0.031 4.031 25 Cl -0.031 7.031 26 N -0.530 5.530 27 C 0.176 3.824 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.271 0.729 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 -20.939 -4.205 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 C -0.433 4.433 4 H 0.123 0.877 5 C -0.172 4.172 6 N -0.511 5.511 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.191 1.191 11 C 0.270 3.730 12 O -0.472 6.472 13 C -0.177 4.177 14 C -0.057 4.057 15 C -0.203 4.203 16 C 0.128 3.872 17 O -0.149 6.149 18 C 0.081 3.919 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.051 4.051 23 Cl -0.016 7.016 24 C -0.059 4.059 25 Cl -0.002 7.002 26 N -0.251 5.251 27 C 0.019 3.981 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.178 0.822 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.674 -21.602 -4.189 22.724 hybrid contribution 0.022 1.501 0.518 1.588 sum -5.652 -20.101 -3.671 21.201 Atomic orbital electron populations 1.21897 0.81314 0.99401 1.01497 1.43505 1.05526 1.04837 1.60685 1.19760 0.99132 0.83358 1.41020 0.87745 1.25384 0.96548 1.00295 0.95020 1.69979 1.18916 1.29708 1.32487 0.85862 0.79776 0.80795 0.78080 1.20247 1.20806 1.19094 1.17586 0.87034 0.82727 0.85695 1.90630 1.13426 1.86654 1.56504 1.21244 0.96887 0.97307 1.02297 1.22002 0.92443 0.97718 0.93536 1.20671 1.03636 0.90337 1.05653 1.19993 0.89433 0.84245 0.93509 1.84568 1.49743 1.14963 1.65655 1.18058 0.94082 0.88398 0.91327 1.21384 1.00637 0.98518 0.91627 1.21053 0.95645 0.94092 1.00236 1.21100 0.97238 1.00770 0.92772 1.20602 0.95187 0.94499 0.94815 1.98398 1.50793 1.68630 1.83812 1.21100 0.97208 0.97419 0.90185 1.98413 1.87059 1.94065 1.20623 1.67342 1.07784 1.29430 1.20593 1.22538 0.97157 0.85015 0.93381 0.91707 0.91234 0.94585 0.91888 0.82171 0.83933 0.83808 0.83689 0.83689 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.14 7.03 59.84 0.42 2.56 16 2 N -0.43 -10.61 3.01 -123.40 -0.37 -10.99 16 3 C -0.30 -8.19 9.31 -15.00 -0.14 -8.33 16 4 H 0.10 2.95 7.37 -52.49 -0.39 2.57 16 5 C 0.03 0.81 5.02 -17.45 -0.09 0.72 16 6 N -0.87 -21.96 10.80 55.50 0.60 -21.36 16 7 Si 0.93 19.88 29.58 -169.99 -5.03 14.85 16 8 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 C 0.48 11.65 7.38 -12.48 -0.09 11.55 16 12 O -0.59 -16.15 16.40 5.26 0.09 -16.06 16 13 C -0.17 -3.35 5.33 -104.82 -0.56 -3.91 16 14 C -0.03 -0.52 7.65 -39.26 -0.30 -0.82 16 15 C -0.18 -2.66 9.97 -39.70 -0.40 -3.06 16 16 C 0.31 4.71 7.36 -16.94 -0.12 4.58 16 17 O -0.24 -3.41 9.42 -2.40 -0.02 -3.44 16 18 C 0.13 1.59 4.93 -39.18 -0.19 1.40 16 19 C -0.10 -1.01 9.99 -39.42 -0.39 -1.40 16 20 C -0.09 -0.70 10.04 -39.60 -0.40 -1.10 16 21 C -0.10 -0.83 9.83 -39.53 -0.39 -1.22 16 22 C -0.02 -0.25 6.32 -39.49 -0.25 -0.50 16 23 Cl -0.05 -0.47 27.96 -51.86 -1.45 -1.92 16 24 C -0.03 -0.39 6.33 -39.32 -0.25 -0.64 16 25 Cl -0.03 -0.43 27.41 -51.86 -1.42 -1.85 16 26 N -0.53 -8.83 9.30 -12.92 -0.12 -8.95 16 27 C 0.18 3.18 10.77 -17.10 -0.18 2.99 16 28 H 0.06 1.35 6.26 -51.93 -0.33 1.03 16 29 H 0.07 1.53 7.11 -51.93 -0.37 1.16 16 30 H 0.04 0.64 5.72 -51.93 -0.30 0.35 16 31 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 32 H 0.16 2.62 5.00 -52.49 -0.26 2.36 16 33 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.17 2.94 7.93 -52.48 -0.42 2.53 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -30.58 352.39 -8.64 -39.22 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -2.88 Total: 2.36 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -3.33 Total: 2.83 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.11 Total: -41.30 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.06 Total: -19.50 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -2.87 Total: -3.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.58 -8.64 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096423632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.945 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds