Wall clock time and date at job start Tue Mar 31 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99619 * 2 1 4 4 H 1.48498 * 109.47356 * 270.00517 * 3 2 1 5 5 H 1.48500 * 109.47253 * 30.00714 * 3 2 1 6 6 H 1.48505 * 109.46746 * 150.00253 * 3 2 1 7 7 C 1.37869 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00001 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.46502 * 120.00008 * 79.40498 * 10 9 7 12 12 C 1.50700 * 109.47164 * 89.99837 * 11 10 9 13 13 C 1.38670 * 120.41640 * 89.99790 * 12 11 10 14 14 C 1.38630 * 118.41942 * 179.97438 * 13 12 11 15 15 C 1.38223 * 119.16149 * 0.25387 * 14 13 12 16 16 N 1.31851 * 120.76447 * 359.50130 * 15 14 13 17 17 C 1.31886 * 121.72607 * 0.49034 * 16 15 14 18 18 C 1.34774 * 120.00563 * 259.40895 * 10 9 7 19 19 O 1.21570 * 120.00588 * 179.74098 * 18 10 9 20 20 C 1.47704 * 119.99843 * 359.73961 * 18 10 9 21 21 C 1.40090 * 120.54946 * 25.03735 * 20 18 10 22 22 C 1.38251 * 118.31534 * 180.02562 * 21 20 18 23 23 C 1.38554 * 119.33498 * 359.97438 * 22 21 20 24 24 Cl 1.73600 * 119.46227 * 179.97438 * 23 22 21 25 25 N 1.32027 * 121.07378 * 0.02562 * 23 22 21 26 26 C 1.31828 * 121.84394 * 359.69769 * 25 23 22 27 27 Cl 1.73592 * 119.73552 * 180.31329 * 26 25 23 28 28 H 0.97001 * 120.00387 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46431 * 60.00354 * 9 7 2 30 30 H 1.08992 * 109.47544 * 300.00506 * 9 7 2 31 31 H 1.09008 * 109.46770 * 330.00675 * 11 10 9 32 32 H 1.09000 * 109.47433 * 210.00195 * 11 10 9 33 33 H 1.08007 * 120.79271 * 359.96757 * 13 12 11 34 34 H 1.08010 * 120.41701 * 179.97438 * 14 13 12 35 35 H 1.08002 * 119.61671 * 179.74602 * 15 14 13 36 36 H 1.07995 * 119.61744 * 179.74851 * 17 16 15 37 37 H 1.07996 * 120.84609 * 0.02580 * 21 20 18 38 38 H 1.07997 * 120.33102 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.0237 -3.3437 -1.2479 12 6 5.3485 -3.1417 -1.9374 13 6 6.4148 -3.9872 -1.6708 14 6 7.6144 -3.7638 -2.3288 15 6 7.7086 -2.7101 -3.2184 16 7 6.6721 -1.9290 -3.4508 17 6 5.5158 -2.1119 -2.8435 18 6 4.4273 -3.1387 1.1462 19 8 4.8282 -4.2864 1.1472 20 6 4.4087 -2.3620 2.4024 21 6 3.5179 -1.2932 2.5655 22 6 3.5402 -0.5974 3.7599 23 6 4.4338 -0.9753 4.7491 24 17 4.4651 -0.1035 6.2500 25 7 5.2625 -1.9871 4.5684 26 6 5.2754 -2.6843 3.4496 27 17 6.3828 -4.0096 3.2737 28 1 -0.4851 0.8400 0.0004 29 1 3.8751 -0.6803 0.8889 30 1 3.8746 -0.6799 -0.8910 31 1 3.2192 -3.0033 -1.9000 32 1 3.8877 -4.4020 -1.0251 33 1 6.3132 -4.8003 -0.9672 34 1 8.4659 -4.4024 -2.1452 35 1 8.6409 -2.5269 -3.7319 36 1 4.6903 -1.4491 -3.0566 37 1 2.8311 -1.0196 1.7782 38 1 2.8679 0.2325 3.9204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096425227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:45 Heat of formation + Delta-G solvation = 61.475136 kcal Electronic energy + Delta-G solvation = -28008.535292 eV Core-core repulsion = 23904.446554 eV Total energy + Delta-G solvation = -4104.088737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.044 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79841 -40.02098 -38.75957 -36.82139 -36.45421 -35.74149 -33.74853 -32.70626 -32.18958 -31.45188 -30.78611 -28.63311 -26.55370 -24.19152 -23.65649 -23.48305 -22.66203 -21.97300 -19.52441 -17.56936 -17.46797 -17.22841 -16.87656 -16.75954 -16.01471 -15.68424 -15.30050 -14.95985 -14.81835 -14.51133 -14.18335 -13.94600 -13.76147 -13.45011 -13.13688 -12.86667 -12.84530 -12.47390 -12.29835 -12.01076 -11.56533 -11.45153 -11.42816 -11.26973 -11.15661 -11.07852 -10.77945 -10.48673 -10.04349 -10.01021 -9.71080 -9.68183 -9.36551 -9.25874 -9.04762 -8.85833 -8.84805 -8.10783 -6.57484 -4.64318 0.49852 1.08784 1.17292 1.41211 1.47421 2.05979 2.95376 2.96900 3.03644 3.08686 3.39282 3.70886 3.95314 4.01486 4.55018 4.57309 4.67744 4.72779 4.83506 4.93885 5.02486 5.08698 5.17285 5.19578 5.21437 5.51545 5.75319 5.89117 5.96753 6.00964 6.06169 6.06468 6.24922 6.36579 6.46754 6.50699 6.81468 6.87871 7.06106 7.37518 7.70804 8.04050 8.06881 8.46513 8.54748 8.97076 10.52485 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.007548 B = 0.004929 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3708.775676 B = 5679.556620 C = 8247.094651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.086 3.914 3 Si 0.856 3.144 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.180 3.820 10 N -0.574 5.574 11 C 0.163 3.837 12 C -0.149 4.149 13 C -0.053 4.053 14 C -0.180 4.180 15 C 0.092 3.908 16 N -0.490 5.490 17 C 0.112 3.888 18 C 0.564 3.436 19 O -0.535 6.535 20 C -0.168 4.168 21 C -0.037 4.037 22 C -0.168 4.168 23 C 0.205 3.795 24 Cl -0.027 7.027 25 N -0.492 5.492 26 C 0.234 3.766 27 Cl 0.003 6.997 28 H 0.274 0.726 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.226 0.774 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 -2.158 1.845 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.122 4.122 3 Si 0.680 3.320 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.059 3.941 10 N -0.303 5.303 11 C 0.040 3.960 12 C -0.152 4.152 13 C -0.080 4.080 14 C -0.200 4.200 15 C -0.066 4.066 16 N -0.198 5.198 17 C -0.045 4.045 18 C 0.351 3.649 19 O -0.414 6.414 20 C -0.174 4.174 21 C -0.061 4.061 22 C -0.189 4.189 23 C 0.042 3.958 24 Cl 0.002 6.998 25 N -0.205 5.205 26 C 0.069 3.931 27 Cl 0.032 6.968 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.241 0.759 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.233 -2.205 2.018 10.661 hybrid contribution -0.108 0.579 0.296 0.659 sum 10.125 -1.627 2.314 10.513 Atomic orbital electron populations 1.69859 1.06211 1.28031 1.46007 1.24925 0.94810 0.98915 0.93530 0.87145 0.80715 0.84020 0.80074 1.19019 1.20042 1.18365 1.21316 0.88571 0.95690 1.53739 0.89291 1.20687 0.95933 0.78610 0.98883 1.47721 1.61022 1.15448 1.06149 1.20220 0.92932 0.97788 0.85073 1.21404 0.98043 0.97062 0.98684 1.21698 0.91886 0.98183 0.96224 1.22128 0.98760 1.00035 0.99069 1.22711 0.97120 0.91298 0.95431 1.67706 1.00048 1.27671 1.24420 1.22813 0.94972 0.94865 0.91840 1.17686 0.78154 0.86108 0.82910 1.90751 1.47801 1.16919 1.85935 1.20722 1.00046 1.00221 0.96417 1.24325 0.94951 0.88621 0.98161 1.22053 1.00446 1.03562 0.92863 1.21720 0.93187 0.91865 0.89074 1.98405 1.97532 1.72620 1.31289 1.66254 1.23902 1.07155 1.23229 1.21488 0.91929 0.90955 0.88737 1.98429 1.59984 1.41907 1.96500 0.91597 0.93079 0.94846 0.88117 0.89081 0.84247 0.85164 0.83238 0.82519 0.75856 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.89 13.96 55.43 0.77 -21.11 16 2 C 0.09 1.98 5.31 -17.82 -0.09 1.89 16 3 Si 0.86 17.10 27.33 -169.99 -4.64 12.46 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -4.87 6.54 56.52 0.37 -4.50 16 7 C -0.56 -12.30 7.92 -34.44 -0.27 -12.57 16 8 H 0.09 2.22 8.06 -52.49 -0.42 1.79 16 9 C 0.18 3.43 3.71 -5.19 -0.02 3.41 16 10 N -0.57 -10.31 2.46 -177.60 -0.44 -10.75 16 11 C 0.16 2.56 5.54 -5.19 -0.03 2.53 16 12 C -0.15 -2.20 5.48 -104.48 -0.57 -2.77 16 13 C -0.05 -0.74 9.86 -39.28 -0.39 -1.13 16 14 C -0.18 -2.18 10.11 -39.44 -0.40 -2.58 16 15 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 16 N -0.49 -7.35 10.36 -13.25 -0.14 -7.49 16 17 C 0.11 1.68 10.86 -17.55 -0.19 1.49 16 18 C 0.56 10.54 7.39 -12.39 -0.09 10.45 16 19 O -0.54 -10.26 13.78 5.30 0.07 -10.19 16 20 C -0.17 -3.06 5.61 -104.79 -0.59 -3.65 16 21 C -0.04 -0.65 7.62 -38.88 -0.30 -0.94 16 22 C -0.17 -2.63 9.86 -39.46 -0.39 -3.02 16 23 C 0.21 3.23 7.27 -17.35 -0.13 3.11 16 24 Cl -0.03 -0.36 29.10 -51.86 -1.51 -1.87 16 25 N -0.49 -8.46 10.30 -7.14 -0.07 -8.53 16 26 C 0.23 4.16 7.30 -17.00 -0.12 4.03 16 27 Cl 0.00 0.05 26.52 -51.86 -1.38 -1.33 16 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.05 0.99 3.20 -51.93 -0.17 0.82 16 30 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 31 H 0.10 1.53 8.00 -51.92 -0.42 1.12 16 32 H 0.09 1.40 7.37 -51.93 -0.38 1.02 16 33 H 0.14 1.94 7.70 -52.48 -0.40 1.53 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.23 4.33 2.70 -52.49 -0.14 4.19 16 38 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -25.79 354.72 -8.94 -34.74 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -3.18 Total: 7.52 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -3.78 Total: 1.21 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.13 Total: -47.89 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -4.64 Total: 12.46 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -2.88 Total: -3.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -25.79 -8.94 -34.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096425227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.212 kcal (2) G-P(sol) polarization free energy of solvation -25.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds