Wall clock time and date at job start Tue Mar 31 2020 07:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99593 * 2 1 4 4 H 1.48494 * 109.47035 * 275.31681 * 3 2 1 5 5 H 1.48497 * 109.47114 * 35.31783 * 3 2 1 6 6 H 1.48497 * 109.46790 * 155.31842 * 3 2 1 7 7 C 1.38812 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00195 * 336.93584 * 7 2 1 9 9 N 1.36942 * 119.99776 * 156.93306 * 7 2 1 10 10 C 1.46500 * 120.00202 * 319.62790 * 9 7 2 11 11 C 1.50692 * 109.47124 * 274.99936 * 10 9 7 12 12 C 1.38231 * 120.00368 * 269.72889 * 11 10 9 13 13 C 1.38231 * 120.00660 * 179.76871 * 12 11 10 14 14 C 1.38244 * 119.99433 * 0.50207 * 13 12 11 15 15 C 1.38233 * 120.00097 * 359.75246 * 14 13 12 16 16 C 1.38236 * 119.99864 * 359.97438 * 15 14 13 17 17 S 1.65603 * 119.99590 * 139.62943 * 9 7 2 18 18 O 1.42092 * 104.27573 * 157.25654 * 17 9 7 19 19 O 1.42098 * 104.27905 * 29.39551 * 17 9 7 20 20 C 1.81405 * 104.44781 * 273.32551 * 17 9 7 21 21 C 1.50698 * 109.47136 * 184.13506 * 20 17 9 22 22 C 1.38707 * 120.40065 * 86.24562 * 21 20 17 23 23 C 1.38566 * 118.43511 * 180.02562 * 22 21 20 24 24 C 1.38396 * 119.15119 * 0.02562 * 23 22 21 25 25 Cl 1.73597 * 119.63570 * 179.97438 * 24 23 22 26 26 N 1.31949 * 120.73052 * 359.97438 * 24 23 22 27 27 C 1.31905 * 121.70489 * 0.04356 * 26 24 23 28 28 H 0.97001 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47015 * 35.00408 * 10 9 7 30 30 H 1.08997 * 109.46756 * 155.00083 * 10 9 7 31 31 H 1.08007 * 119.99792 * 359.97438 * 12 11 10 32 32 H 1.07999 * 120.00745 * 180.23173 * 13 12 11 33 33 H 1.07999 * 119.99749 * 179.72203 * 14 13 12 34 34 H 1.08001 * 120.00104 * 179.97438 * 15 14 13 35 35 H 1.07998 * 119.99705 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.47025 * 64.13737 * 20 17 9 37 37 H 1.09000 * 109.46853 * 304.13597 * 20 17 9 38 38 H 1.08000 * 120.78730 * 0.02562 * 22 21 20 39 39 H 1.08002 * 120.42496 * 179.72501 * 23 22 21 40 40 H 1.07997 * 119.60921 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3852 2.1114 -1.3940 5 1 1.5082 2.6177 0.8094 6 1 3.5993 1.4105 0.5846 7 6 2.0103 -1.2021 -0.0005 8 1 1.5351 -2.1002 0.3655 9 7 3.2976 -1.2492 -0.4652 10 6 3.6738 -0.4877 -1.6589 11 6 3.3528 -1.2939 -2.8909 12 6 4.3004 -2.1465 -3.4254 13 6 4.0043 -2.8897 -4.5527 14 6 2.7639 -2.7724 -5.1517 15 6 1.8180 -1.9158 -4.6202 16 6 2.1122 -1.1769 -3.4896 17 16 4.4290 -2.1670 0.3222 18 8 5.4203 -2.4226 -0.6632 19 8 3.6798 -3.2272 0.9000 20 6 5.0817 -1.0718 1.6127 21 6 6.2030 -1.7667 2.3414 22 6 7.5009 -1.7034 1.8562 23 6 8.5003 -2.3577 2.5583 24 6 8.1724 -3.0483 3.7120 25 17 9.4145 -3.8732 4.6011 26 7 6.9261 -3.0868 4.1436 27 6 5.9504 -2.4756 3.4999 28 1 -0.4851 0.8400 0.0004 29 1 3.1173 0.4493 -1.6825 30 1 4.7425 -0.2750 -1.6322 31 1 5.2712 -2.2346 -2.9603 32 1 4.7434 -3.5586 -4.9682 33 1 2.5341 -3.3496 -6.0350 34 1 0.8490 -1.8239 -5.0883 35 1 1.3734 -0.5074 -3.0746 36 1 4.2871 -0.8269 2.3175 37 1 5.4575 -0.1561 1.1562 38 1 7.7272 -1.1569 0.9526 39 1 9.5214 -2.3332 2.2071 40 1 4.9423 -2.5296 3.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096427768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:39 Heat of formation + Delta-G solvation = -4.443326 kcal Electronic energy + Delta-G solvation = -28349.831928 eV Core-core repulsion = 24283.042891 eV Total energy + Delta-G solvation = -4066.789038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.059 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -40.26769 -38.84760 -36.74310 -36.07537 -35.93723 -34.72355 -33.54832 -32.63584 -31.98866 -30.72467 -30.35140 -27.28272 -26.16375 -24.15638 -23.83102 -22.29817 -22.00701 -21.00640 -18.52388 -17.50022 -17.38642 -16.96887 -16.78627 -16.13672 -15.97466 -15.55977 -15.02476 -14.72914 -14.49140 -14.40854 -14.34373 -13.86567 -13.30410 -13.26991 -13.17118 -12.92118 -12.83913 -12.50981 -12.29669 -11.97805 -11.91562 -11.75852 -11.48666 -11.37849 -11.07534 -11.02651 -10.95208 -10.74024 -10.58705 -10.50097 -10.39857 -10.22315 -9.83798 -9.65716 -9.32818 -8.76786 -8.38217 -8.33831 -8.23935 -6.97825 -4.37765 0.68333 1.08253 1.35014 1.73953 1.86507 1.94444 2.79274 2.92286 2.96149 3.58756 3.67629 3.75279 4.29377 4.41595 4.43985 4.61323 4.73362 4.86139 4.93014 5.03949 5.18558 5.29488 5.33028 5.45449 5.50321 5.63746 5.67945 5.73384 5.81624 5.94724 6.00011 6.10909 6.15465 6.16342 6.45886 6.47006 6.56337 6.73068 6.96981 6.99208 7.10051 7.24474 7.53210 7.65442 8.00073 8.54962 8.66509 10.06598 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003336 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.300071 B = 8391.577360 C = 9786.872556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.067 3.933 3 Si 0.870 3.130 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.235 4.235 8 H 0.125 0.875 9 N -0.816 5.816 10 C 0.156 3.844 11 C -0.087 4.087 12 C -0.100 4.100 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.132 4.132 16 C -0.085 4.085 17 S 2.459 3.541 18 O -0.993 6.993 19 O -0.963 6.963 20 C -0.621 4.621 21 C -0.107 4.107 22 C -0.064 4.064 23 C -0.149 4.149 24 C 0.160 3.840 25 Cl -0.040 7.040 26 N -0.472 5.472 27 C 0.120 3.880 28 H 0.286 0.714 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 2.524 -2.055 10.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.151 4.151 3 Si 0.695 3.305 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.386 4.386 8 H 0.142 0.858 9 N -0.638 5.638 10 C 0.030 3.970 11 C -0.089 4.089 12 C -0.119 4.119 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.104 4.104 17 S 2.561 3.439 18 O -0.982 6.982 19 O -0.953 6.953 20 C -0.736 4.736 21 C -0.110 4.110 22 C -0.090 4.090 23 C -0.169 4.169 24 C -0.004 4.004 25 Cl -0.011 7.011 26 N -0.182 5.182 27 C -0.038 4.038 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.853 1.111 -1.261 9.996 hybrid contribution 0.563 1.832 -0.075 1.918 sum 10.417 2.943 -1.336 10.907 Atomic orbital electron populations 1.69846 1.06547 1.29576 1.37922 1.25919 0.95373 0.99502 0.94305 0.87014 0.81551 0.82748 0.79208 1.18838 1.20453 1.17796 1.19497 0.84061 0.96820 1.38224 0.85775 1.53959 1.17579 1.65517 1.26794 1.20316 0.99688 0.93985 0.82976 1.20088 0.94391 0.98629 0.95776 1.21417 1.00425 0.94932 0.95129 1.21067 0.96975 1.00245 0.96979 1.21058 0.94174 0.99156 1.00009 1.21060 0.99044 0.97763 0.97110 1.21130 0.95947 0.98873 0.94449 1.14844 0.73685 0.80521 0.74806 1.93308 1.62479 1.85938 1.56495 1.93402 1.68764 1.53775 1.79347 1.30290 1.05079 1.17180 1.21071 1.20421 0.94808 0.99085 0.96722 1.21608 0.91335 0.96837 0.99233 1.21795 1.01559 0.98797 0.94794 1.21608 0.89615 0.96873 0.92330 1.98384 1.49158 1.77505 1.76071 1.67012 0.99276 1.18958 1.32999 1.22745 0.97994 0.92070 0.90982 0.90324 0.91199 0.90222 0.84488 0.86711 0.86901 0.86593 0.85703 0.84954 0.85842 0.83207 0.83545 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.70 13.97 55.49 0.78 -17.92 16 2 C 0.07 1.48 5.30 -17.43 -0.09 1.39 16 3 Si 0.87 16.40 25.23 -169.99 -4.29 12.11 16 4 H -0.26 -4.71 6.67 56.52 0.38 -4.33 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.25 -4.47 7.11 56.52 0.40 -4.07 16 7 C -0.24 -5.41 9.44 -15.06 -0.14 -5.55 16 8 H 0.12 3.21 7.61 -52.49 -0.40 2.82 16 9 N -0.82 -17.07 2.33 -61.09 -0.14 -17.21 16 10 C 0.16 2.92 4.38 -5.20 -0.02 2.90 16 11 C -0.09 -1.63 5.43 -104.63 -0.57 -2.20 16 12 C -0.10 -1.80 9.20 -39.59 -0.36 -2.17 16 13 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 14 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 15 C -0.13 -2.10 10.05 -39.58 -0.40 -2.49 16 16 C -0.09 -1.54 9.70 -39.58 -0.38 -1.93 16 17 S 2.46 51.01 5.32 -107.50 -0.57 50.44 16 18 O -0.99 -20.91 14.83 -57.54 -0.85 -21.77 16 19 O -0.96 -23.60 17.00 -57.54 -0.98 -24.57 16 20 C -0.62 -10.42 6.33 36.00 0.23 -10.19 16 21 C -0.11 -1.74 5.16 -104.48 -0.54 -2.28 16 22 C -0.06 -0.91 9.87 -39.29 -0.39 -1.30 16 23 C -0.15 -1.96 9.88 -39.40 -0.39 -2.35 16 24 C 0.16 2.38 7.27 -17.44 -0.13 2.25 16 25 Cl -0.04 -0.50 29.11 -51.86 -1.51 -2.01 16 26 N -0.47 -7.86 10.34 -10.36 -0.11 -7.97 16 27 C 0.12 1.98 10.84 -17.55 -0.19 1.79 16 28 H 0.29 6.07 8.31 -40.82 -0.34 5.74 16 29 H 0.07 1.27 3.43 -51.93 -0.18 1.10 16 30 H 0.08 1.30 7.45 -51.93 -0.39 0.91 16 31 H 0.14 2.48 6.53 -52.48 -0.34 2.14 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 36 H 0.13 2.11 8.07 -51.92 -0.42 1.69 16 37 H 0.12 1.81 8.12 -51.92 -0.42 1.39 16 38 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -27.67 367.89 -10.57 -38.25 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -4.27 Total: 12.07 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -4.17 Total: -26.95 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.53 Total: -43.10 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.83 Total: -46.34 kcal Atomic # 14 Polarization: 16.40 SS G_CDS: -4.29 Total: 12.11 kcal Atomic # 16 Polarization: 51.01 SS G_CDS: -0.57 Total: 50.44 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.67 -10.57 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.803 kcal (2) G-P(sol) polarization free energy of solvation -27.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds