Wall clock time and date at job start Tue Mar 31 2020 07:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99593 * 2 1 4 4 H 1.48494 * 109.47035 * 275.31681 * 3 2 1 5 5 H 1.48497 * 109.47114 * 35.31783 * 3 2 1 6 6 H 1.48497 * 109.46790 * 155.31842 * 3 2 1 7 7 C 1.38812 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00195 * 336.93584 * 7 2 1 9 9 N 1.36942 * 119.99776 * 156.93306 * 7 2 1 10 10 C 1.46500 * 120.00202 * 319.62790 * 9 7 2 11 11 C 1.50692 * 109.47124 * 274.99936 * 10 9 7 12 12 C 1.38231 * 120.00368 * 269.72889 * 11 10 9 13 13 C 1.38231 * 120.00660 * 179.76871 * 12 11 10 14 14 C 1.38244 * 119.99433 * 0.50207 * 13 12 11 15 15 C 1.38233 * 120.00097 * 359.75246 * 14 13 12 16 16 C 1.38236 * 119.99864 * 359.97438 * 15 14 13 17 17 S 1.65603 * 119.99590 * 139.62943 * 9 7 2 18 18 O 1.42092 * 104.27573 * 157.25654 * 17 9 7 19 19 O 1.42098 * 104.27905 * 29.39551 * 17 9 7 20 20 C 1.81405 * 104.44781 * 273.32551 * 17 9 7 21 21 C 1.50698 * 109.47136 * 184.13506 * 20 17 9 22 22 C 1.38707 * 120.40065 * 86.24562 * 21 20 17 23 23 C 1.38566 * 118.43511 * 180.02562 * 22 21 20 24 24 C 1.38396 * 119.15119 * 0.02562 * 23 22 21 25 25 Cl 1.73597 * 119.63570 * 179.97438 * 24 23 22 26 26 N 1.31949 * 120.73052 * 359.97438 * 24 23 22 27 27 C 1.31905 * 121.70489 * 0.04356 * 26 24 23 28 28 H 0.97001 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47015 * 35.00408 * 10 9 7 30 30 H 1.08997 * 109.46756 * 155.00083 * 10 9 7 31 31 H 1.08007 * 119.99792 * 359.97438 * 12 11 10 32 32 H 1.07999 * 120.00745 * 180.23173 * 13 12 11 33 33 H 1.07999 * 119.99749 * 179.72203 * 14 13 12 34 34 H 1.08001 * 120.00104 * 179.97438 * 15 14 13 35 35 H 1.07998 * 119.99705 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.47025 * 64.13737 * 20 17 9 37 37 H 1.09000 * 109.46853 * 304.13597 * 20 17 9 38 38 H 1.08000 * 120.78730 * 0.02562 * 22 21 20 39 39 H 1.08002 * 120.42496 * 179.72501 * 23 22 21 40 40 H 1.07997 * 119.60921 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3852 2.1114 -1.3940 5 1 1.5082 2.6177 0.8094 6 1 3.5993 1.4105 0.5846 7 6 2.0103 -1.2021 -0.0005 8 1 1.5351 -2.1002 0.3655 9 7 3.2976 -1.2492 -0.4652 10 6 3.6738 -0.4877 -1.6589 11 6 3.3528 -1.2939 -2.8909 12 6 4.3004 -2.1465 -3.4254 13 6 4.0043 -2.8897 -4.5527 14 6 2.7639 -2.7724 -5.1517 15 6 1.8180 -1.9158 -4.6202 16 6 2.1122 -1.1769 -3.4896 17 16 4.4290 -2.1670 0.3222 18 8 5.4203 -2.4226 -0.6632 19 8 3.6798 -3.2272 0.9000 20 6 5.0817 -1.0718 1.6127 21 6 6.2030 -1.7667 2.3414 22 6 7.5009 -1.7034 1.8562 23 6 8.5003 -2.3577 2.5583 24 6 8.1724 -3.0483 3.7120 25 17 9.4145 -3.8732 4.6011 26 7 6.9261 -3.0868 4.1436 27 6 5.9504 -2.4756 3.4999 28 1 -0.4851 0.8400 0.0004 29 1 3.1173 0.4493 -1.6825 30 1 4.7425 -0.2750 -1.6322 31 1 5.2712 -2.2346 -2.9603 32 1 4.7434 -3.5586 -4.9682 33 1 2.5341 -3.3496 -6.0350 34 1 0.8490 -1.8239 -5.0883 35 1 1.3734 -0.5074 -3.0746 36 1 4.2871 -0.8269 2.3175 37 1 5.4575 -0.1561 1.1562 38 1 7.7272 -1.1569 0.9526 39 1 9.5214 -2.3332 2.2071 40 1 4.9423 -2.5296 3.8833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096427768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:36 Heat of formation + Delta-G solvation = -20.734887 kcal Electronic energy + Delta-G solvation = -28350.538383 eV Core-core repulsion = 24283.042891 eV Total energy + Delta-G solvation = -4067.495493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.059 amu Computer time = 5.89 seconds Orbital eigenvalues (eV) -41.43892 -40.16450 -37.81100 -37.78693 -37.56547 -36.58680 -34.81918 -34.18632 -33.13486 -32.11682 -31.63975 -28.62471 -27.62509 -25.75510 -24.98488 -23.53310 -23.30996 -22.33875 -20.19340 -19.06670 -18.58805 -18.56137 -18.00503 -17.59305 -17.38182 -17.10920 -16.26073 -16.22679 -15.94925 -15.78092 -15.55999 -15.07392 -14.82449 -14.70442 -14.37446 -14.29895 -14.15723 -13.86538 -13.76868 -13.31275 -13.18203 -13.02018 -12.90884 -12.80662 -12.74658 -12.59482 -12.41828 -12.28426 -12.04908 -11.93083 -11.83637 -11.60375 -11.02207 -10.88578 -10.82823 -10.15075 -9.81152 -9.68770 -9.57015 -8.56539 -6.12010 -0.72425 -0.11249 0.00681 0.54630 0.63307 0.64824 1.31044 1.40409 1.49003 2.07969 2.21063 2.41131 2.75143 3.02977 3.11968 3.30927 3.38900 3.47408 3.73986 3.78765 3.86784 3.96317 4.03778 4.25661 4.29376 4.33101 4.44200 4.50705 4.55543 4.60795 4.75831 4.79800 4.86930 4.95996 5.10201 5.24516 5.30559 5.34265 5.54485 5.68915 5.71009 5.89877 6.23369 6.25767 6.47791 6.92073 7.03302 8.54111 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003336 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.300071 B = 8391.577360 C = 9786.872556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.040 3.960 3 Si 0.911 3.089 4 H -0.250 1.250 5 H -0.285 1.285 6 H -0.226 1.226 7 C -0.278 4.278 8 H 0.069 0.931 9 N -0.834 5.834 10 C 0.145 3.855 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.136 4.136 14 C -0.122 4.122 15 C -0.136 4.136 16 C -0.109 4.109 17 S 2.509 3.491 18 O -0.989 6.989 19 O -1.005 7.005 20 C -0.599 4.599 21 C -0.132 4.132 22 C -0.059 4.059 23 C -0.140 4.140 24 C 0.152 3.848 25 Cl -0.022 7.022 26 N -0.496 5.496 27 C 0.107 3.893 28 H 0.286 0.714 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.180 0.820 39 H 0.185 0.815 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.825 2.934 -2.824 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.172 4.172 3 Si 0.733 3.267 4 H -0.176 1.176 5 H -0.211 1.211 6 H -0.148 1.148 7 C -0.422 4.422 8 H 0.087 0.913 9 N -0.658 5.658 10 C 0.020 3.980 11 C -0.111 4.111 12 C -0.137 4.137 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.154 4.154 16 C -0.128 4.128 17 S 2.613 3.387 18 O -0.978 6.978 19 O -0.995 6.995 20 C -0.722 4.722 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.160 4.160 24 C -0.013 4.013 25 Cl 0.007 6.993 26 N -0.207 5.207 27 C -0.050 4.050 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.197 0.803 39 H 0.203 0.797 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.030 1.524 -2.100 14.268 hybrid contribution -0.305 1.443 0.283 1.502 sum 13.725 2.967 -1.816 14.159 Atomic orbital electron populations 1.69938 1.08169 1.30144 1.42045 1.26281 0.95542 1.01926 0.93422 0.86359 0.81631 0.78843 0.79896 1.17577 1.21102 1.14794 1.18712 0.86179 0.95620 1.41671 0.91297 1.53424 1.17310 1.66278 1.28832 1.20603 1.01112 0.93927 0.82337 1.20252 0.94944 0.99597 0.96267 1.21512 1.00186 0.95737 0.96296 1.21453 0.97988 0.99816 0.96155 1.21461 0.93361 0.98457 1.00690 1.21383 1.00379 0.97249 0.96358 1.21183 0.95856 0.99933 0.95805 1.11024 0.73339 0.78982 0.75325 1.93350 1.61869 1.85743 1.56882 1.93400 1.70388 1.55366 1.80391 1.29932 1.06198 1.16764 1.19336 1.20395 0.95494 1.00342 0.97376 1.22039 0.90448 0.96201 0.99864 1.22210 1.03199 0.97084 0.93537 1.22065 0.89515 0.96690 0.93005 1.98394 1.48030 1.77123 1.75798 1.67022 1.00178 1.19758 1.33763 1.22905 0.98431 0.92214 0.91488 0.90346 0.91003 0.87605 0.84742 0.83901 0.83314 0.84517 0.87392 0.83794 0.82260 0.80310 0.79741 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.00 13.97 21.65 0.30 -43.70 16 2 C 0.04 1.90 5.30 84.86 0.45 2.35 16 3 Si 0.91 33.77 25.23 68.60 1.73 35.50 16 4 H -0.25 -8.68 6.67 99.48 0.66 -8.02 16 5 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.23 -7.15 7.11 99.48 0.71 -6.44 16 7 C -0.28 -13.71 9.44 84.03 0.79 -12.91 16 8 H 0.07 4.00 7.61 -2.91 -0.02 3.98 16 9 N -0.83 -35.28 2.33 -347.19 -0.81 -36.09 16 10 C 0.15 5.37 4.38 85.63 0.38 5.74 16 11 C -0.11 -4.10 5.43 -19.87 -0.11 -4.21 16 12 C -0.12 -4.13 9.20 22.27 0.20 -3.93 16 13 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 14 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 15 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 16 C -0.11 -4.07 9.70 22.27 0.22 -3.86 16 17 S 2.51 101.28 5.32 -56.49 -0.30 100.98 16 18 O -0.99 -39.15 14.83 -127.65 -1.89 -41.04 16 19 O -1.01 -50.19 17.00 -127.65 -2.17 -52.36 16 20 C -0.60 -18.20 6.33 71.24 0.45 -17.75 16 21 C -0.13 -3.87 5.16 -19.77 -0.10 -3.97 16 22 C -0.06 -1.41 9.87 22.46 0.22 -1.19 16 23 C -0.14 -3.04 9.88 22.39 0.22 -2.82 16 24 C 0.15 4.02 7.27 84.71 0.62 4.64 16 25 Cl -0.02 -0.49 29.11 -2.72 -0.08 -0.57 16 26 N -0.50 -15.51 10.34 -186.70 -1.93 -17.44 16 27 C 0.11 3.33 10.84 84.66 0.92 4.25 16 28 H 0.29 13.30 8.31 -92.71 -0.77 12.53 16 29 H 0.07 2.61 3.43 -2.39 -0.01 2.60 16 30 H 0.11 3.20 7.45 -2.39 -0.02 3.18 16 31 H 0.13 4.64 6.53 -2.91 -0.02 4.62 16 32 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 35 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.14 4.25 8.07 -2.39 -0.02 4.23 16 37 H 0.16 3.82 8.12 -2.39 -0.02 3.80 16 38 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.17 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -64.81 367.89 0.82 -63.99 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 1.04 Total: 35.40 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 4.93 Total: -44.66 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -2.44 Total: -97.23 kcal Atomic # 8 Polarization: -89.34 SS G_CDS: -4.06 Total: -93.40 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 1.73 Total: 35.50 kcal Atomic # 16 Polarization: 101.28 SS G_CDS: -0.30 Total: 100.98 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -64.81 0.82 -63.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.258 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.89 seconds