Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 S 1.65600 * 119.99915 * 240.00242 * 12 2 1 15 15 O 1.42101 * 106.39901 * 203.53726 * 14 12 2 16 16 O 1.42096 * 106.40513 * 336.45952 * 14 12 2 17 17 C 1.76201 * 107.21772 * 90.00280 * 14 12 2 18 18 C 1.38267 * 119.98085 * 89.99773 * 17 14 12 19 19 C 1.38214 * 120.05981 * 179.97438 * 18 17 14 20 20 C 1.38301 * 120.01496 * 359.97438 * 19 18 17 21 21 Br 1.89094 * 120.02310 * 179.97438 * 20 19 18 22 22 C 1.38525 * 119.95560 * 0.02562 * 20 19 18 23 23 F 1.35101 * 120.02716 * 180.02562 * 22 20 19 24 24 C 1.38191 * 119.97200 * 269.72101 * 17 14 12 25 25 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 27 27 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 30 30 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 31 31 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 32 32 H 1.08003 * 119.96898 * 0.02562 * 18 17 14 33 33 H 1.07996 * 119.99225 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.01184 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 6 1.8960 0.8536 3.4711 18 6 1.5381 0.1555 4.6097 19 6 0.6959 0.7340 5.5404 20 6 0.2105 2.0125 5.3339 21 35 -0.9424 2.8039 6.6067 22 6 0.5685 2.7124 4.1934 23 9 0.0956 3.9616 3.9904 24 6 1.4161 2.1329 3.2644 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.9028 -0.5285 -4.4375 29 1 2.4157 -2.7377 0.9718 30 1 1.6237 -2.2852 2.5003 31 1 0.6904 -2.3002 0.9847 32 1 1.9178 -0.8424 4.7724 33 1 0.4174 0.1880 6.4296 34 1 1.6992 2.6792 2.3769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096427919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -70.298965 kcal Electronic energy + Delta-G solvation = -23179.896402 eV Core-core repulsion = 19394.647556 eV Total energy + Delta-G solvation = -3785.248847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.28523 -39.36967 -37.04026 -36.57214 -35.55724 -33.02842 -32.59127 -31.16383 -30.15121 -29.80738 -25.95857 -25.10954 -23.68456 -23.20602 -21.00465 -19.21958 -17.98777 -17.37578 -17.05678 -16.55110 -16.47409 -16.07335 -15.87232 -15.57315 -14.76614 -14.42019 -13.85286 -13.61751 -13.52752 -13.21911 -12.92338 -12.66266 -12.40372 -12.33922 -12.23815 -12.04730 -11.77018 -11.63882 -11.55888 -11.31553 -11.18964 -10.90039 -10.78110 -10.55547 -10.22796 -9.68682 -9.54416 -9.49247 -9.22287 -8.70187 -8.26860 -6.18700 -4.20197 0.05374 0.61584 0.66900 0.98658 2.72773 3.17853 3.28528 3.32394 3.37004 3.64482 3.99497 4.07794 4.28832 4.45365 4.71075 4.84296 4.99661 5.09491 5.20010 5.33242 5.44254 5.49763 5.62039 5.90083 6.09209 6.13197 6.20684 6.22904 6.35172 6.46463 6.70292 7.13813 7.22235 7.52533 8.39102 8.85288 9.40353 10.94017 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.003578 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.383335 B = 7823.154166 C = 8743.042222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.237 3.763 3 H 0.060 0.940 4 C -0.524 4.524 5 H 0.084 0.916 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.878 3.122 9 H -0.276 1.276 10 H -0.264 1.264 11 H -0.292 1.292 12 N -0.969 5.969 13 C 0.105 3.895 14 S 2.683 3.317 15 O -0.957 6.957 16 O -0.942 6.942 17 C -0.635 4.635 18 C -0.027 4.027 19 C -0.086 4.086 20 C -0.088 4.088 21 Br -0.022 7.022 22 C 0.107 3.893 23 F -0.119 7.119 24 C -0.045 4.045 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 4.274 21.085 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.133 3.867 3 H 0.077 0.923 4 C -0.563 4.563 5 H 0.102 0.898 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.708 3.292 9 H -0.203 1.203 10 H -0.189 1.189 11 H -0.219 1.219 12 N -0.810 5.810 13 C -0.041 4.041 14 S 2.769 3.231 15 O -0.947 6.947 16 O -0.932 6.932 17 C -0.717 4.717 18 C -0.047 4.047 19 C -0.106 4.106 20 C -0.169 4.169 21 Br 0.063 6.937 22 C 0.085 3.915 23 F -0.098 7.098 24 C -0.065 4.065 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.713 4.691 21.392 22.906 hybrid contribution -1.276 1.076 -0.237 1.686 sum -7.989 5.768 21.155 23.337 Atomic orbital electron populations 1.22532 0.99015 1.01723 0.99217 1.19199 0.90483 0.93804 0.83235 0.92293 1.21095 1.32826 1.14442 0.87932 0.89754 1.24883 0.95644 0.96477 0.95676 1.69862 1.44924 1.40049 0.98007 0.87006 0.80568 0.83894 0.77728 1.20319 1.18858 1.21926 1.57164 1.70417 1.19847 1.33537 1.21308 1.02493 0.81056 0.99251 1.02520 0.74063 0.73705 0.72824 1.93553 1.67595 1.58751 1.74848 1.93600 1.72795 1.55978 1.70859 1.31810 1.19162 1.04880 1.15881 1.21051 0.92988 0.99896 0.90756 1.21172 0.96605 0.92434 1.00411 1.22256 1.01602 0.97734 0.95294 1.96798 1.61362 1.82068 1.53430 1.17386 0.97884 0.81352 0.94919 1.91584 1.86392 1.37073 1.94729 1.20994 0.92911 0.93890 0.98742 0.91876 0.94953 0.92977 0.92325 0.92094 0.92743 0.90513 0.82559 0.83093 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.65 37.16 0.32 -2.87 16 2 C 0.24 5.14 2.21 -69.08 -0.15 4.99 16 3 H 0.06 1.33 5.97 -51.93 -0.31 1.02 16 4 C -0.52 -13.73 8.95 -34.44 -0.31 -14.04 16 5 H 0.08 2.39 7.89 -52.49 -0.41 1.98 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 8 Si 0.88 20.66 24.37 -169.99 -4.14 16.51 16 9 H -0.28 -6.22 6.87 56.52 0.39 -5.83 16 10 H -0.26 -5.88 6.53 56.52 0.37 -5.51 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 N -0.97 -17.73 3.06 -115.84 -0.35 -18.09 16 13 C 0.10 1.61 9.53 59.85 0.57 2.18 16 14 S 2.68 46.09 5.64 -107.50 -0.61 45.48 16 15 O -0.96 -16.99 16.35 -57.17 -0.93 -17.92 16 16 O -0.94 -19.21 15.84 -57.17 -0.91 -20.12 16 17 C -0.64 -8.76 5.97 -39.59 -0.24 -8.99 16 18 C -0.03 -0.30 9.52 -39.58 -0.38 -0.68 16 19 C -0.09 -0.84 9.79 -39.57 -0.39 -1.23 16 20 C -0.09 -1.00 6.23 -39.45 -0.25 -1.25 16 21 Br -0.02 -0.22 33.28 -68.01 -2.26 -2.49 16 22 C 0.11 1.39 7.27 -39.39 -0.29 1.10 16 23 F -0.12 -1.59 16.73 2.25 0.04 -1.55 16 24 C -0.04 -0.62 9.50 -39.52 -0.38 -1.00 16 25 H 0.06 1.14 6.66 -51.93 -0.35 0.79 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.64 7.79 -51.93 -0.40 0.24 16 31 H 0.08 1.12 6.43 -51.93 -0.33 0.79 16 32 H 0.16 1.41 7.61 -52.48 -0.40 1.01 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.16 2.22 7.61 -52.49 -0.40 1.83 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -31.13 318.71 -8.39 -39.52 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -3.23 Total: -1.11 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.57 Total: -19.79 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.42 Total: -43.34 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.84 Total: -38.04 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.14 Total: 16.51 kcal Atomic # 16 Polarization: 46.09 SS G_CDS: -0.61 Total: 45.48 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.26 Total: -2.49 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.13 -8.39 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.777 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds