Wall clock time and date at job start Tue Mar 31 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46758 * 2 1 4 4 C 1.50697 * 109.47205 * 120.00157 * 2 1 3 5 5 H 1.07997 * 120.00147 * 120.00550 * 4 2 1 6 6 C 1.37881 * 119.99832 * 300.00045 * 4 2 1 7 7 N 1.31513 * 120.00241 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46843 * 60.00151 * 8 6 4 10 10 H 1.48494 * 109.47387 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47063 * 300.00537 * 8 6 4 12 12 N 1.46493 * 109.47087 * 240.00305 * 2 1 3 13 13 C 1.46502 * 120.00046 * 299.99543 * 12 2 1 14 14 S 1.65597 * 120.00253 * 119.99889 * 12 2 1 15 15 O 1.42101 * 106.40675 * 156.45486 * 14 12 2 16 16 O 1.42097 * 106.40073 * 23.53600 * 14 12 2 17 17 C 1.76200 * 107.21779 * 269.99853 * 14 12 2 18 18 C 1.38270 * 119.97200 * 89.99984 * 17 14 12 19 19 C 1.38186 * 120.04143 * 180.30207 * 18 17 14 20 20 C 1.38449 * 119.98704 * 359.44145 * 19 18 17 21 21 F 1.35107 * 120.02978 * 180.27921 * 20 19 18 22 22 C 1.38521 * 119.94118 * 0.55702 * 20 19 18 23 23 Br 1.89097 * 120.02280 * 179.74556 * 22 20 19 24 24 C 1.38212 * 119.97052 * 270.01895 * 17 14 12 25 25 H 1.09009 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47388 * 299.99543 * 1 2 3 27 27 H 1.08992 * 109.47174 * 60.00257 * 1 2 3 28 28 H 0.96999 * 120.00374 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.47408 * 270.00427 * 13 12 2 30 30 H 1.08998 * 109.46937 * 30.00414 * 13 12 2 31 31 H 1.09005 * 109.47560 * 150.00292 * 13 12 2 32 32 H 1.08002 * 119.97404 * 0.02562 * 18 17 14 33 33 H 1.08005 * 120.00522 * 179.72841 * 19 18 17 34 34 H 1.08002 * 119.99515 * 359.95958 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8269 -0.4200 5.2204 11 1 1.8282 -2.5198 4.0081 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 16 2.9704 0.1143 -2.2862 15 8 3.7119 -0.8787 -2.9814 16 8 3.5793 1.1830 -1.5748 17 6 1.8960 0.8536 -3.4710 18 6 1.4114 2.1315 -3.2614 19 6 0.5637 2.7103 -4.1867 20 6 0.2086 2.0148 -5.3299 21 9 -0.6156 2.5821 -6.2378 22 6 0.6945 0.7346 -5.5393 23 35 0.2052 -0.2201 -7.0965 24 6 1.5381 0.1554 -4.6089 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7081 1.1608 3.4844 29 1 2.4158 -2.7377 -0.9717 30 1 0.6905 -2.3002 -0.9847 31 1 1.6239 -2.2852 -2.5002 32 1 1.6920 2.6758 -2.3719 33 1 0.1820 3.7068 -4.0202 34 1 1.9175 -0.8425 -4.7718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096436429.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:27 Heat of formation + Delta-G solvation = -81.268902 kcal Electronic energy + Delta-G solvation = -23031.803697 eV Core-core repulsion = 19246.079158 eV Total energy + Delta-G solvation = -3785.724539 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.40225 -39.25734 -36.87905 -36.29418 -35.40909 -32.80187 -32.66382 -31.21595 -29.56663 -29.18324 -25.71148 -25.21409 -23.56780 -23.16079 -20.81653 -18.74158 -18.15079 -17.37152 -17.03565 -16.90862 -16.29254 -16.11067 -15.29348 -14.88141 -14.58482 -13.97672 -13.77745 -13.75641 -13.50507 -13.25138 -13.10310 -12.87299 -12.10796 -11.88674 -11.70906 -11.51047 -11.44786 -11.35890 -11.31387 -11.03422 -11.02061 -10.85169 -10.60508 -10.47909 -10.35288 -10.06740 -9.47687 -9.34828 -9.15622 -8.51173 -8.09228 -6.13238 -4.20058 0.28054 0.68431 0.81164 1.17392 2.84559 3.27776 3.32413 3.35391 3.53966 3.65130 4.13505 4.23366 4.35914 4.54939 4.76395 4.88092 5.18260 5.20103 5.31145 5.44751 5.48854 5.69770 5.75230 6.05860 6.26030 6.28828 6.53151 6.67381 6.71590 6.91189 7.31289 7.53987 7.70464 7.95878 8.19028 8.81773 9.46086 10.92447 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.003211 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.524336 B = 8718.526139 C = 9014.079221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.266 3.734 3 H 0.062 0.938 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.976 5.976 13 C 0.106 3.894 14 S 2.683 3.317 15 O -0.967 6.967 16 O -0.944 6.944 17 C -0.681 4.681 18 C 0.029 3.971 19 C -0.167 4.167 20 C 0.172 3.828 21 F -0.119 7.119 22 C -0.157 4.157 23 Br -0.026 7.026 24 C 0.034 3.966 25 H 0.036 0.964 26 H 0.095 0.905 27 H 0.010 0.990 28 H 0.264 0.736 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 0.515 -17.205 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.560 4.560 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.817 5.817 13 C -0.040 4.040 14 S 2.770 3.230 15 O -0.957 6.957 16 O -0.935 6.935 17 C -0.764 4.764 18 C 0.010 3.990 19 C -0.187 4.187 20 C 0.151 3.849 21 F -0.097 7.097 22 C -0.238 4.238 23 Br 0.060 6.940 24 C 0.014 3.986 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.253 0.370 -17.721 18.021 hybrid contribution -0.596 0.084 0.639 0.878 sum -3.850 0.454 -17.083 17.517 Atomic orbital electron populations 1.22159 0.98172 1.00003 1.00722 1.18842 0.91375 0.93185 0.80271 0.92053 1.21257 1.31859 1.13142 0.89788 0.91804 1.24893 0.94876 0.94980 0.98991 1.69832 1.36343 1.22665 1.24020 0.86539 0.79400 0.79590 0.81795 1.20076 1.21216 1.20204 1.57447 1.70383 1.19608 1.34289 1.21246 1.02170 0.81547 0.99081 1.02444 0.74156 0.73681 0.72762 1.93531 1.68155 1.58993 1.75029 1.93593 1.72997 1.55982 1.70891 1.31829 1.22149 1.06733 1.15713 1.21067 0.88675 0.91834 0.97416 1.21309 1.01796 1.02147 0.93492 1.17598 0.89365 0.90301 0.87666 1.91580 1.68745 1.84269 1.65125 1.21975 1.07497 0.95923 0.98424 1.96757 1.91785 1.73669 1.31834 1.20800 0.89500 0.99153 0.89170 0.94542 0.88647 0.97103 0.92559 0.92652 0.90613 0.93096 0.82155 0.82776 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.95 37.16 0.33 -2.87 16 2 C 0.27 6.04 2.62 -69.09 -0.18 5.86 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.52 -13.28 8.37 -34.44 -0.29 -13.57 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.21 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.62 11.32 55.43 0.63 -22.99 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.98 -18.73 3.06 -115.85 -0.35 -19.08 16 13 C 0.11 1.73 9.53 59.85 0.57 2.30 16 14 S 2.68 48.45 5.64 -107.50 -0.61 47.85 16 15 O -0.97 -18.20 16.35 -57.17 -0.93 -19.13 16 16 O -0.94 -19.84 15.84 -57.17 -0.91 -20.74 16 17 C -0.68 -10.08 5.97 -39.58 -0.24 -10.32 16 18 C 0.03 0.40 9.52 -39.59 -0.38 0.02 16 19 C -0.17 -1.94 10.03 -39.52 -0.40 -2.34 16 20 C 0.17 2.13 7.27 -39.40 -0.29 1.85 16 21 F -0.12 -1.43 16.73 2.25 0.04 -1.39 16 22 C -0.16 -2.01 6.23 -39.45 -0.25 -2.25 16 23 Br -0.03 -0.29 33.28 -68.01 -2.26 -2.55 16 24 C 0.03 0.46 9.26 -39.57 -0.37 0.10 16 25 H 0.04 0.73 6.66 -51.92 -0.35 0.39 16 26 H 0.10 2.26 6.07 -51.93 -0.32 1.95 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 31 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 32 H 0.16 2.06 7.61 -52.49 -0.40 1.66 16 33 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.16 1.91 7.61 -52.49 -0.40 1.51 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -29.09 325.53 -9.45 -38.54 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.36 Total: -1.09 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.57 Total: -19.63 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.27 Total: -42.08 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.84 Total: -39.87 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 48.45 SS G_CDS: -0.61 Total: 47.85 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.26 Total: -2.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.09 -9.45 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096436429.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.729 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds