Wall clock time and date at job start Tue Mar 31 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46758 * 2 1 4 4 C 1.50697 * 109.47205 * 120.00157 * 2 1 3 5 5 H 1.07997 * 120.00147 * 120.00550 * 4 2 1 6 6 C 1.37881 * 119.99832 * 300.00045 * 4 2 1 7 7 N 1.31513 * 120.00241 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46843 * 60.00151 * 8 6 4 10 10 H 1.48494 * 109.47387 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47063 * 300.00537 * 8 6 4 12 12 N 1.46493 * 109.47087 * 240.00305 * 2 1 3 13 13 C 1.46502 * 120.00046 * 299.99543 * 12 2 1 14 14 S 1.65597 * 120.00253 * 119.99889 * 12 2 1 15 15 O 1.42101 * 106.40675 * 156.45486 * 14 12 2 16 16 O 1.42097 * 106.40073 * 23.53600 * 14 12 2 17 17 C 1.76200 * 107.21779 * 269.99853 * 14 12 2 18 18 C 1.38270 * 119.97200 * 89.99984 * 17 14 12 19 19 C 1.38186 * 120.04143 * 180.30207 * 18 17 14 20 20 C 1.38449 * 119.98704 * 359.44145 * 19 18 17 21 21 F 1.35107 * 120.02978 * 180.27921 * 20 19 18 22 22 C 1.38521 * 119.94118 * 0.55702 * 20 19 18 23 23 Br 1.89097 * 120.02280 * 179.74556 * 22 20 19 24 24 C 1.38212 * 119.97052 * 270.01895 * 17 14 12 25 25 H 1.09009 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47388 * 299.99543 * 1 2 3 27 27 H 1.08992 * 109.47174 * 60.00257 * 1 2 3 28 28 H 0.96999 * 120.00374 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.47408 * 270.00427 * 13 12 2 30 30 H 1.08998 * 109.46937 * 30.00414 * 13 12 2 31 31 H 1.09005 * 109.47560 * 150.00292 * 13 12 2 32 32 H 1.08002 * 119.97404 * 0.02562 * 18 17 14 33 33 H 1.08005 * 120.00522 * 179.72841 * 19 18 17 34 34 H 1.08002 * 119.99515 * 359.95958 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8269 -0.4200 5.2204 11 1 1.8282 -2.5198 4.0081 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 16 2.9704 0.1143 -2.2862 15 8 3.7119 -0.8787 -2.9814 16 8 3.5793 1.1830 -1.5748 17 6 1.8960 0.8536 -3.4710 18 6 1.4114 2.1315 -3.2614 19 6 0.5637 2.7103 -4.1867 20 6 0.2086 2.0148 -5.3299 21 9 -0.6156 2.5821 -6.2378 22 6 0.6945 0.7346 -5.5393 23 35 0.2052 -0.2201 -7.0965 24 6 1.5381 0.1554 -4.6089 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7081 1.1608 3.4844 29 1 2.4158 -2.7377 -0.9717 30 1 0.6905 -2.3002 -0.9847 31 1 1.6239 -2.2852 -2.5002 32 1 1.6920 2.6758 -2.3719 33 1 0.1820 3.7068 -4.0202 34 1 1.9175 -0.8425 -4.7718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096436429.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:27 Heat of formation + Delta-G solvation = -98.657644 kcal Electronic energy + Delta-G solvation = -23032.557729 eV Core-core repulsion = 19246.079158 eV Total energy + Delta-G solvation = -3786.478571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.36427 -40.28519 -38.39372 -37.90399 -36.92799 -34.50866 -33.78294 -32.25811 -30.90006 -30.53946 -27.26247 -26.99845 -24.61666 -24.20970 -22.51001 -20.06744 -19.29032 -18.69693 -18.53002 -18.13480 -17.90809 -17.08511 -16.93681 -16.26691 -15.86705 -15.27476 -14.99117 -14.95093 -14.65883 -14.62148 -14.50912 -14.16814 -13.70473 -13.38600 -13.20211 -13.14156 -12.97045 -12.75983 -12.57554 -12.54382 -12.41091 -12.24716 -12.17450 -12.10091 -11.83534 -11.50031 -11.12638 -10.50051 -10.45093 -10.15061 -9.66822 -8.08392 -6.20909 -0.83088 -0.55634 -0.30555 0.20819 1.47112 1.48781 1.55217 1.75574 2.18545 2.47432 2.65623 2.76159 3.16432 3.20754 3.38265 3.73715 3.83358 4.07512 4.09989 4.38443 4.44350 4.66889 4.70201 4.73183 4.87022 5.01648 5.05626 5.15180 5.21723 5.30126 5.64886 5.73616 5.89602 6.14437 6.33076 6.85675 7.47757 8.95451 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.003211 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.524336 B = 8718.526139 C = 9014.079221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.270 3.730 3 H 0.036 0.964 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.985 5.985 13 C 0.097 3.903 14 S 2.694 3.306 15 O -0.979 6.979 16 O -0.983 6.983 17 C -0.684 4.684 18 C 0.019 3.981 19 C -0.155 4.155 20 C 0.175 3.825 21 F -0.114 7.114 22 C -0.163 4.163 23 Br -0.010 7.010 24 C 0.032 3.968 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.186 0.814 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 0.308 -18.560 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.054 0.946 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.825 5.825 13 C -0.048 4.048 14 S 2.786 3.214 15 O -0.969 6.969 16 O -0.973 6.973 17 C -0.772 4.772 18 C 0.000 4.000 19 C -0.175 4.175 20 C 0.153 3.847 21 F -0.092 7.092 22 C -0.244 4.244 23 Br 0.075 6.925 24 C 0.012 3.988 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.179 0.821 33 H 0.203 0.797 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.141 0.121 -19.052 19.497 hybrid contribution -0.339 0.176 0.898 0.976 sum -4.479 0.297 -18.154 18.701 Atomic orbital electron populations 1.21960 0.96937 1.00372 1.00591 1.18522 0.92186 0.91894 0.80801 0.94578 1.21600 1.31716 1.13125 0.91277 0.92390 1.25556 0.95212 0.95678 1.01404 1.69941 1.37137 1.23583 1.24388 0.85722 0.78518 0.79029 0.79028 1.20453 1.20889 1.19341 1.57304 1.70367 1.20812 1.34017 1.21463 1.02131 0.79973 1.01272 1.01675 0.74077 0.72948 0.72697 1.93507 1.68956 1.59471 1.74983 1.93542 1.74464 1.57022 1.72275 1.31173 1.22941 1.07559 1.15486 1.21195 0.89193 0.91502 0.98127 1.21560 1.00413 1.03182 0.92326 1.17709 0.88997 0.90187 0.87784 1.91598 1.68521 1.84143 1.64971 1.22089 1.07174 0.96305 0.98828 1.96779 1.91589 1.73391 1.30742 1.20904 0.89570 0.99597 0.88777 0.93845 0.91216 0.94678 0.92641 0.93249 0.90166 0.89879 0.82105 0.79662 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.85 8.95 71.98 0.64 -5.20 16 2 C 0.27 12.37 2.62 44.25 0.12 12.49 16 3 H 0.04 1.84 6.91 -2.39 -0.02 1.82 16 4 C -0.54 -27.70 8.37 25.60 0.21 -27.49 16 5 H 0.06 2.97 7.65 -2.91 -0.02 2.95 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -48.94 11.32 21.45 0.24 -48.70 16 8 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 N -0.99 -37.54 3.06 -520.45 -1.59 -39.14 16 13 C 0.10 3.06 9.53 127.77 1.22 4.28 16 14 S 2.69 96.99 5.64 -56.49 -0.32 96.67 16 15 O -0.98 -36.32 16.35 -128.00 -2.09 -38.41 16 16 O -0.98 -42.24 15.84 -128.00 -2.03 -44.26 16 17 C -0.68 -19.40 5.97 22.27 0.13 -19.26 16 18 C 0.02 0.49 9.52 22.27 0.21 0.70 16 19 C -0.15 -3.18 10.03 22.31 0.22 -2.95 16 20 C 0.18 3.84 7.27 22.39 0.16 4.00 16 21 F -0.11 -2.40 16.73 44.97 0.75 -1.65 16 22 C -0.16 -3.76 6.23 22.35 0.14 -3.62 16 23 Br -0.01 -0.21 33.28 -20.37 -0.68 -0.88 16 24 C 0.03 0.81 9.26 22.28 0.21 1.01 16 25 H 0.04 1.71 6.66 -2.38 -0.02 1.70 16 26 H 0.07 3.32 6.07 -2.39 -0.01 3.30 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.08 2.45 6.43 -2.39 -0.02 2.43 16 31 H 0.08 2.05 7.79 -2.38 -0.02 2.04 16 32 H 0.16 4.05 7.61 -2.91 -0.02 4.03 16 33 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.17 3.72 7.61 -2.91 -0.02 3.70 16 Total: -1.00 -61.79 325.53 1.17 -60.62 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.14 Total: 6.38 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 3.72 Total: -34.45 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.35 Total: -87.84 kcal Atomic # 8 Polarization: -78.56 SS G_CDS: -4.12 Total: -82.68 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.75 Total: -1.65 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 96.99 SS G_CDS: -0.32 Total: 96.67 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.68 Total: -0.88 kcal Total: -61.79 1.17 -60.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096436429.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.040 kcal (2) G-P(sol) polarization free energy of solvation -61.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds