Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 C 1.76195 * 107.21884 * 89.99923 * 14 12 2 18 18 C 1.38272 * 119.96938 * 90.00115 * 17 14 12 19 19 C 1.38188 * 120.04180 * 180.02562 * 18 17 14 20 20 C 1.38461 * 119.98707 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.02828 * 179.97438 * 20 19 18 22 22 C 1.38516 * 119.93687 * 0.02562 * 20 19 18 23 23 Br 1.89107 * 120.01737 * 179.97438 * 22 20 19 24 24 C 1.38218 * 119.97429 * 269.72942 * 17 14 12 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 1.07993 * 119.97426 * 0.02562 * 18 17 14 33 33 H 1.08002 * 120.00580 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.98560 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 6 1.8960 0.8537 3.4711 18 6 1.5383 0.1554 4.6096 19 6 0.6953 0.7337 5.5396 20 6 0.2090 2.0132 5.3314 21 9 -0.6155 2.5791 6.2397 22 6 0.5678 2.7121 4.1906 23 35 -0.0957 4.4595 3.9037 24 6 1.4160 2.1332 3.2643 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 1.9179 -0.8424 4.7722 33 1 0.4166 0.1879 6.4289 34 1 1.6993 2.6791 2.3765 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096436430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = -80.886389 kcal Electronic energy + Delta-G solvation = -23078.607441 eV Core-core repulsion = 19292.899489 eV Total energy + Delta-G solvation = -3785.707952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 364.988 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.40171 -39.25074 -36.87606 -36.28702 -35.40459 -32.76633 -32.64951 -31.19643 -29.53220 -29.17285 -25.70757 -25.20032 -23.58386 -23.12816 -20.81273 -18.73565 -18.14843 -17.37039 -17.04611 -16.87431 -16.30013 -16.10755 -15.27729 -14.87170 -14.58106 -13.97484 -13.80490 -13.68337 -13.54462 -13.22565 -13.09738 -12.86520 -12.10259 -11.88395 -11.70608 -11.51098 -11.43506 -11.31728 -11.29280 -11.02151 -10.99518 -10.84036 -10.55707 -10.43124 -10.33757 -10.05661 -9.46812 -9.33336 -9.12315 -8.49775 -8.08501 -6.11508 -4.18618 0.27708 0.69884 0.81983 1.25669 2.84165 3.28592 3.33408 3.36125 3.54265 3.66120 4.14596 4.20778 4.36932 4.54934 4.74615 4.91759 5.17106 5.20072 5.31803 5.46496 5.50127 5.65318 5.73878 6.04957 6.25703 6.27689 6.53302 6.69281 6.72759 6.93082 7.32389 7.55318 7.72007 7.97616 8.20441 8.83126 9.47445 10.94163 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.003901 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.653514 B = 7175.714577 C = 8368.974779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.266 3.734 3 H 0.062 0.938 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.277 1.277 12 N -0.976 5.976 13 C 0.106 3.894 14 S 2.683 3.317 15 O -0.967 6.967 16 O -0.944 6.944 17 C -0.681 4.681 18 C 0.020 3.980 19 C -0.171 4.171 20 C 0.172 3.828 21 F -0.119 7.119 22 C -0.154 4.154 23 Br -0.021 7.021 24 C 0.043 3.957 25 H 0.035 0.965 26 H 0.010 0.990 27 H 0.095 0.905 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 2.517 15.875 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.817 5.817 13 C -0.040 4.040 14 S 2.769 3.231 15 O -0.957 6.957 16 O -0.935 6.935 17 C -0.765 4.765 18 C 0.001 3.999 19 C -0.191 4.191 20 C 0.150 3.850 21 F -0.097 7.097 22 C -0.235 4.235 23 Br 0.064 6.936 24 C 0.022 3.978 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.460 3.401 15.691 16.424 hybrid contribution -0.558 -0.482 -0.251 0.779 sum -4.019 2.918 15.440 16.219 Atomic orbital electron populations 1.22157 0.98166 0.99942 1.00783 1.18847 0.91386 0.93197 0.80248 0.92060 1.21249 1.31901 1.13147 0.89778 0.91812 1.24902 0.94883 0.94985 0.98998 1.69841 1.36289 1.22617 1.24029 0.86538 0.79388 0.79564 0.81820 1.21212 1.20085 1.20216 1.57451 1.70383 1.19587 1.34308 1.21239 1.02165 0.81575 0.99027 1.02447 0.74160 0.73671 0.72779 1.93526 1.68125 1.58996 1.75086 1.93598 1.73036 1.55933 1.70885 1.31821 1.22114 1.05837 1.16680 1.20949 0.90164 0.99135 0.89662 1.21241 1.01444 0.93817 1.02610 1.17592 0.89512 0.91792 0.86059 1.91575 1.68762 1.84631 1.64756 1.22025 1.06945 0.95552 0.99001 1.96784 1.86113 1.14031 1.96633 1.20914 0.88121 0.92215 0.96545 0.94555 0.97116 0.88619 0.92539 0.92687 0.93103 0.90633 0.82659 0.82992 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 2 C 0.27 6.12 2.62 -69.09 -0.18 5.94 16 3 H 0.06 1.54 6.91 -51.92 -0.36 1.19 16 4 C -0.52 -13.38 8.37 -34.44 -0.29 -13.67 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.92 11.32 55.43 0.63 -23.29 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.98 -18.76 3.06 -115.86 -0.35 -19.12 16 13 C 0.11 1.71 9.53 59.85 0.57 2.28 16 14 S 2.68 48.55 5.64 -107.50 -0.61 47.94 16 15 O -0.97 -17.87 16.35 -57.17 -0.93 -18.80 16 16 O -0.94 -20.21 15.84 -57.17 -0.91 -21.12 16 17 C -0.68 -10.12 5.97 -39.58 -0.24 -10.36 16 18 C 0.02 0.24 9.52 -39.59 -0.38 -0.13 16 19 C -0.17 -1.83 10.03 -39.52 -0.40 -2.23 16 20 C 0.17 2.14 7.27 -39.40 -0.29 1.85 16 21 F -0.12 -1.43 16.73 2.25 0.04 -1.39 16 22 C -0.15 -2.12 6.23 -39.46 -0.25 -2.37 16 23 Br -0.02 -0.27 33.28 -68.01 -2.26 -2.53 16 24 C 0.04 0.64 9.26 -39.57 -0.37 0.27 16 25 H 0.04 0.73 6.66 -51.93 -0.35 0.39 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.10 2.31 6.07 -51.93 -0.32 1.99 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.64 7.79 -51.93 -0.40 0.24 16 31 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 32 H 0.16 1.52 7.61 -52.49 -0.40 1.12 16 33 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.16 2.47 7.61 -52.48 -0.40 2.07 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -29.52 325.52 -9.45 -38.96 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.36 Total: -1.28 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.57 Total: -19.73 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.27 Total: -42.41 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.84 Total: -39.92 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 48.55 SS G_CDS: -0.61 Total: 47.94 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.26 Total: -2.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.52 -9.45 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096436430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.923 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds