Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.50701 * 109.46882 * 119.99595 * 2 1 3 5 5 N 1.31928 * 119.01776 * 299.72898 * 4 2 1 6 6 C 1.32140 * 121.05282 * 180.28070 * 5 4 2 7 7 C 1.38990 * 119.12641 * 359.97438 * 6 5 4 8 8 Cl 1.73600 * 120.88558 * 179.97438 * 7 6 5 9 9 C 1.39628 * 118.22569 * 0.02562 * 7 6 5 10 10 C 1.48370 * 120.55988 * 179.97438 * 9 7 6 11 11 O 1.21484 * 120.00205 * 353.98681 * 10 9 7 12 12 N 1.34781 * 119.99603 * 173.99010 * 10 9 7 13 13 C 1.46491 * 120.00513 * 3.53667 * 12 10 9 14 14 C 1.50692 * 109.47281 * 82.91461 * 13 12 10 15 15 H 1.08001 * 119.99857 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00419 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99615 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46958 * 90.00036 * 18 16 14 20 20 H 1.48498 * 109.46883 * 209.99850 * 18 16 14 21 21 H 1.48499 * 109.47154 * 329.99760 * 18 16 14 22 22 C 1.46502 * 119.99555 * 183.53796 * 12 10 9 23 23 C 1.53003 * 109.47331 * 94.85892 * 22 12 10 24 24 F 1.39895 * 109.47320 * 59.99446 * 23 22 12 25 25 F 1.39901 * 109.47592 * 180.02562 * 23 22 12 26 26 F 1.39904 * 109.46752 * 300.00024 * 23 22 12 27 27 N 1.31520 * 119.01815 * 120.00530 * 4 2 1 28 28 H 1.09005 * 109.47408 * 300.00418 * 1 2 3 29 29 H 1.09000 * 109.47193 * 60.00124 * 1 2 3 30 30 H 1.08990 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47288 * 239.99764 * 2 1 3 32 32 H 1.09007 * 109.47071 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47227 * 299.99233 * 3 2 1 34 34 H 1.08997 * 109.47726 * 59.99998 * 3 2 1 35 35 H 1.08000 * 120.43467 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47675 * 202.91589 * 13 12 10 37 37 H 1.09007 * 109.47255 * 322.91429 * 13 12 10 38 38 H 0.96995 * 120.00219 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.47354 * 214.85494 * 22 12 10 40 40 H 1.09000 * 109.47412 * 334.85584 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7062 -0.2397 2.4191 6 6 2.1289 -0.8275 3.5245 7 6 2.9291 -1.9596 3.4251 8 17 3.5103 -2.7677 4.8474 9 6 3.2538 -2.4290 2.1508 10 6 4.1050 -3.6329 1.9846 11 8 4.6153 -4.1548 2.9556 12 7 4.3121 -4.1472 0.7561 13 6 3.7612 -3.4739 -0.4225 14 6 4.6851 -2.3599 -0.8423 15 1 5.5918 -2.1720 -0.2864 16 6 4.3724 -1.5798 -1.9354 17 7 3.2681 -1.8083 -2.6119 18 14 5.5174 -0.1985 -2.4553 19 1 6.5140 -0.7201 -3.4248 20 1 4.7276 0.8858 -3.0923 21 1 6.2208 0.3370 -1.2621 22 6 5.0882 -5.3799 0.5996 23 6 4.1377 -6.5776 0.5450 24 9 3.2675 -6.4333 -0.5408 25 9 4.8788 -7.7548 0.3960 26 9 3.3976 -6.6399 1.7306 27 7 2.7871 -1.7778 1.0875 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.8562 -0.4334 4.4923 36 1 3.6625 -4.1908 -1.2377 37 1 2.7814 -3.0617 -0.1807 38 1 3.0482 -1.2599 -3.3811 39 1 5.6648 -5.3314 -0.3242 40 1 5.7662 -5.4924 1.4456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096444428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = -137.955030 kcal Electronic energy + Delta-G solvation = -32781.580401 eV Core-core repulsion = 27822.110912 eV Total energy + Delta-G solvation = -4959.469489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.086 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.09766 -48.61519 -48.58864 -42.49638 -40.61364 -37.88778 -37.03023 -36.35135 -35.05879 -34.47408 -31.98489 -31.05319 -28.84522 -28.00622 -26.78847 -25.55137 -24.85938 -24.47610 -22.41621 -20.63846 -19.67906 -19.55530 -19.23228 -18.80863 -18.37320 -17.92009 -17.34156 -16.88765 -16.66211 -16.53331 -16.10506 -15.57146 -15.47538 -15.41183 -15.08324 -15.03106 -15.00839 -14.76513 -14.74321 -14.61685 -14.24694 -13.96184 -13.70302 -13.42065 -13.27025 -13.14005 -12.90998 -12.87053 -12.78849 -12.69357 -12.24186 -12.10924 -12.05304 -11.93122 -11.86306 -11.70475 -11.67662 -11.15421 -10.43309 -10.24611 -9.89927 -9.61219 -8.02451 -6.07326 -0.75417 -0.20080 0.86864 1.40151 1.42198 1.45683 1.49460 1.65751 1.93540 2.47345 2.58906 2.75329 2.85516 2.90138 3.03645 3.17376 3.30939 3.36435 3.52916 3.82665 4.05349 4.14235 4.26998 4.32065 4.39680 4.64514 4.75758 4.84082 4.87747 4.98296 5.05235 5.20748 5.36238 5.44161 5.56624 5.68820 5.76154 5.87845 6.21719 6.25766 6.78587 6.95789 7.01860 7.54897 9.04812 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.007932 B = 0.005763 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.289193 B = 4857.698644 C = 6988.144994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.041 4.041 3 C -0.129 4.129 4 C 0.309 3.691 5 N -0.485 5.485 6 C 0.165 3.835 7 C -0.113 4.113 8 Cl -0.006 7.006 9 C 0.117 3.883 10 C 0.564 3.436 11 O -0.532 6.532 12 N -0.580 5.580 13 C 0.240 3.760 14 C -0.509 4.509 15 H 0.037 0.963 16 C 0.049 3.951 17 N -0.898 5.898 18 Si 0.921 3.079 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.286 1.286 22 C 0.075 3.925 23 C 0.439 3.561 24 F -0.187 7.187 25 F -0.177 7.177 26 F -0.189 7.189 27 N -0.431 5.431 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.020 0.980 37 H 0.076 0.924 38 H 0.264 0.736 39 H 0.140 0.860 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 1.023 8.266 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.062 4.062 3 C -0.187 4.187 4 C 0.043 3.957 5 N -0.199 5.199 6 C -0.005 4.005 7 C -0.146 4.146 8 Cl 0.023 6.977 9 C -0.031 4.031 10 C 0.350 3.650 11 O -0.409 6.409 12 N -0.310 5.310 13 C 0.121 3.879 14 C -0.548 4.548 15 H 0.055 0.945 16 C -0.152 4.152 17 N -0.537 5.537 18 Si 0.749 3.251 19 H -0.207 1.207 20 H -0.200 1.200 21 H -0.211 1.211 22 C -0.051 4.051 23 C 0.383 3.617 24 F -0.168 7.168 25 F -0.158 7.158 26 F -0.171 7.171 27 N -0.146 5.146 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.525 1.145 7.888 8.716 hybrid contribution 1.075 -0.213 0.157 1.107 sum -2.449 0.932 8.045 8.461 Atomic orbital electron populations 1.21683 0.91582 1.01628 1.03474 1.20212 0.97574 0.96108 0.92268 1.21697 0.99709 0.93779 1.03520 1.23820 0.89351 0.88689 0.93827 1.68266 1.22046 1.31149 0.98470 1.23960 0.88966 0.87921 0.99624 1.22986 1.02524 0.99013 0.90041 1.98399 1.86813 1.78059 1.34462 1.21556 0.96458 0.96042 0.89068 1.17969 0.80764 0.82936 0.83284 1.90773 1.50278 1.61213 1.38617 1.48111 1.51275 1.23337 1.08281 1.19980 0.96671 0.91024 0.80264 1.21186 1.05880 1.15732 1.12027 0.94512 1.25078 0.95830 0.98055 0.96231 1.69963 1.24084 1.40278 1.19395 0.86155 0.79953 0.80991 0.78030 1.20747 1.20038 1.21149 1.22705 0.92468 0.80529 1.09406 1.21364 0.81531 0.85634 0.73165 1.93194 1.72094 1.95748 1.55786 1.93169 1.76416 1.50753 1.95479 1.93173 1.79117 1.96737 1.48081 1.69435 1.07982 1.07220 1.29995 0.90885 0.90198 0.93963 0.88476 0.95014 0.90302 0.90573 0.76093 0.96223 0.90688 0.92673 0.84261 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.09 71.98 0.65 -2.76 16 2 C -0.04 -1.39 3.25 -11.54 -0.04 -1.43 16 3 C -0.13 -3.79 9.08 71.98 0.65 -3.14 16 4 C 0.31 11.13 6.34 138.79 0.88 12.01 16 5 N -0.49 -14.73 9.78 -187.76 -1.84 -16.56 16 6 C 0.16 4.35 11.14 84.83 0.94 5.29 16 7 C -0.11 -3.61 6.40 22.79 0.15 -3.47 16 8 Cl -0.01 -0.18 26.27 -2.72 -0.07 -0.26 16 9 C 0.12 4.56 6.65 41.98 0.28 4.84 16 10 C 0.56 22.92 7.33 86.94 0.64 23.56 16 11 O -0.53 -21.42 13.67 -3.66 -0.05 -21.47 16 12 N -0.58 -23.42 2.40 -828.98 -1.99 -25.41 16 13 C 0.24 11.01 4.47 85.63 0.38 11.40 16 14 C -0.51 -25.05 8.07 25.60 0.21 -24.84 16 15 H 0.04 1.89 7.81 -2.91 -0.02 1.87 16 16 C 0.05 2.42 5.44 84.66 0.46 2.88 16 17 N -0.90 -45.16 12.47 21.45 0.27 -44.89 16 18 Si 0.92 40.27 29.54 68.60 2.03 42.30 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 C 0.07 2.46 5.49 86.38 0.47 2.93 16 23 C 0.44 14.42 3.29 71.98 0.24 14.66 16 24 F -0.19 -6.79 15.90 44.97 0.72 -6.08 16 25 F -0.18 -5.19 17.32 44.97 0.78 -4.41 16 26 F -0.19 -6.75 16.99 44.97 0.76 -5.99 16 27 N -0.43 -17.68 5.11 -177.05 -0.90 -18.59 16 28 H 0.07 1.76 8.01 -2.38 -0.02 1.74 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 3.99 7.24 -2.39 -0.02 3.98 16 32 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 1.96 8.00 -2.39 -0.02 1.94 16 35 H 0.22 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.02 0.97 6.98 -2.39 -0.02 0.95 16 37 H 0.08 3.70 5.20 -2.74 -0.01 3.68 16 38 H 0.26 12.73 8.31 -92.71 -0.77 11.96 16 39 H 0.14 4.18 8.11 -2.39 -0.02 4.16 16 40 H 0.14 4.08 7.24 -2.39 -0.02 4.06 16 Total: -1.00 -56.65 364.33 6.72 -49.93 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.10 Total: 9.49 kcal Atomic # 6 Polarization: 36.02 SS G_CDS: 5.92 Total: 41.94 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.46 Total: -105.45 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 9 Polarization: -18.73 SS G_CDS: 2.26 Total: -16.47 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.07 Total: -0.26 kcal Total: -56.65 6.72 -49.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096444428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.028 kcal (2) G-P(sol) polarization free energy of solvation -56.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds