Wall clock time and date at job start Tue Mar 31 2020 07:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38272 * 119.92216 * 2 1 4 4 C 1.38152 * 120.10831 * 180.02562 * 3 2 1 5 5 C 1.38792 * 119.95780 * 359.97438 * 4 3 2 6 6 N 1.40073 * 120.08055 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99934 * 325.34083 * 6 5 4 8 8 O 1.21591 * 119.99777 * 4.44028 * 7 6 5 9 9 N 1.34773 * 120.00146 * 184.43545 * 7 6 5 10 10 C 1.46504 * 119.99929 * 0.02562 * 9 7 6 11 11 C 1.50703 * 109.46770 * 90.00269 * 10 9 7 12 12 H 1.07999 * 120.00358 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99731 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00281 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99829 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47182 * 90.00114 * 15 13 11 17 17 H 1.48508 * 109.46760 * 209.99867 * 15 13 11 18 18 H 1.48496 * 109.47098 * 329.99652 * 15 13 11 19 19 C 1.46503 * 119.99879 * 180.02562 * 9 7 6 20 20 C 1.52994 * 109.47436 * 90.00296 * 19 9 7 21 21 N 1.46898 * 109.47520 * 179.97438 * 20 19 9 22 22 C 1.47011 * 110.99864 * 293.63566 * 21 20 19 23 23 C 1.53094 * 109.25869 * 177.60712 * 22 21 20 24 24 O 1.43016 * 109.26017 * 56.84454 * 23 22 21 25 25 C 1.43015 * 113.74059 * 301.33205 * 24 23 22 26 26 C 1.47016 * 111.00247 * 169.99576 * 21 20 19 27 27 C 1.39054 * 119.84545 * 0.02562 * 5 4 3 28 28 F 1.35095 * 120.05428 * 179.97438 * 27 5 4 29 29 C 1.38275 * 119.91972 * 180.22412 * 2 1 3 30 30 H 1.09004 * 109.46961 * 90.00818 * 1 2 3 31 31 H 1.09001 * 109.46998 * 210.00338 * 1 2 3 32 32 H 1.09001 * 109.47369 * 330.00351 * 1 2 3 33 33 H 1.07991 * 119.94774 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.02003 * 179.97438 * 4 3 2 35 35 H 0.96999 * 120.00275 * 145.34632 * 6 5 4 36 36 H 1.09005 * 109.46940 * 209.99697 * 10 9 7 37 37 H 1.08991 * 109.47396 * 329.99999 * 10 9 7 38 38 H 0.97005 * 120.00213 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.46570 * 210.00072 * 19 9 7 40 40 H 1.08999 * 109.47145 * 329.99786 * 19 9 7 41 41 H 1.09005 * 109.46732 * 300.00182 * 20 19 9 42 42 H 1.08999 * 109.47370 * 59.99627 * 20 19 9 43 43 H 1.09001 * 109.50451 * 297.53709 * 22 21 20 44 44 H 1.08994 * 109.50855 * 57.67098 * 22 21 20 45 45 H 1.09004 * 109.50627 * 296.90873 * 23 22 21 46 46 H 1.08999 * 109.54280 * 176.80716 * 23 22 21 47 47 H 1.09006 * 109.50788 * 298.73684 * 25 24 23 48 48 H 1.08999 * 109.54580 * 178.62554 * 25 24 23 49 49 H 1.09002 * 109.50758 * 302.33067 * 26 21 20 50 50 H 1.08998 * 109.50223 * 62.41502 * 26 21 20 51 51 H 1.07997 * 119.97922 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5783 1.2029 -0.0005 5 6 4.2752 0.0027 -0.0005 6 7 5.6760 0.0042 -0.0016 7 6 6.3483 0.9648 -0.6664 8 8 5.7416 1.8750 -1.1972 9 7 7.6930 0.9164 -0.7426 10 6 8.4239 -0.1807 -0.1035 11 6 8.5793 -1.3173 -1.0808 12 1 8.1738 -1.2313 -2.0780 13 6 9.2383 -2.4674 -0.7013 14 7 9.3735 -3.4595 -1.5539 15 14 9.9390 -2.6164 1.0239 16 1 8.9148 -3.2026 1.9253 17 1 11.1363 -3.4947 0.9977 18 1 10.3232 -1.2706 1.5201 19 6 8.4237 1.9608 -1.4647 20 6 8.7749 3.0965 -0.5016 21 7 9.5082 4.1434 -1.2255 22 6 10.8206 3.6544 -1.6724 23 6 11.5240 4.7546 -2.4715 24 8 11.6306 5.9298 -1.6635 25 6 10.3709 6.4338 -1.2113 26 6 9.6557 5.3506 -0.3994 27 6 3.5798 -1.2014 -0.0005 28 9 4.2539 -2.3722 -0.0011 29 6 2.1967 -1.1985 -0.0047 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6547 2.1324 -0.0004 34 1 4.1156 2.1398 -0.0010 35 1 6.1621 -0.6860 0.4760 36 1 9.4087 0.1702 0.2053 37 1 7.8707 -0.5256 0.7700 38 1 9.8368 -4.2689 -1.2868 39 1 9.3396 1.5415 -1.8814 40 1 7.8015 2.3480 -2.2716 41 1 7.8590 3.5157 -0.0849 42 1 9.3972 2.7093 0.3053 43 1 11.4257 3.3913 -0.8048 44 1 10.6861 2.7758 -2.3032 45 1 10.9457 4.9801 -3.3675 46 1 12.5205 4.4175 -2.7570 47 1 9.7589 6.7081 -2.0706 48 1 10.5327 7.3109 -0.5848 49 1 8.6709 5.7100 -0.1009 50 1 10.2415 5.1143 0.4889 51 1 1.6551 -2.1328 -0.0088 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096446394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:08 Heat of formation + Delta-G solvation = -74.770517 kcal Electronic energy + Delta-G solvation = -33701.261806 eV Core-core repulsion = 29129.718758 eV Total energy + Delta-G solvation = -4571.543049 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.55436 -40.32268 -39.57821 -38.62945 -36.39503 -35.05281 -34.70223 -32.63604 -31.51153 -31.23777 -30.40139 -29.82722 -27.94079 -26.73451 -25.48957 -24.09256 -22.97883 -22.71097 -22.33371 -21.20613 -20.39087 -19.35056 -18.10544 -17.19293 -16.95343 -16.66149 -16.55598 -16.20484 -16.02405 -15.40783 -15.32045 -15.16636 -15.06127 -14.90439 -14.43163 -14.35901 -13.87836 -13.81189 -13.71920 -13.57682 -13.40144 -13.14653 -12.99970 -12.55483 -12.48787 -12.23788 -12.16392 -11.92021 -11.75874 -11.64815 -11.55486 -11.45162 -11.25683 -11.03736 -10.85377 -10.75453 -10.49072 -10.32394 -9.98202 -9.79075 -9.69598 -9.51775 -8.80893 -8.65199 -8.43897 -8.05542 -7.61913 -6.28508 -4.31881 1.28653 1.38998 2.97876 3.10649 3.16949 3.20991 3.46598 3.68502 3.81045 3.95204 4.18332 4.37313 4.46075 4.79041 4.81177 4.92153 4.93211 4.95635 5.00395 5.06055 5.18539 5.24493 5.31154 5.33949 5.46347 5.47683 5.52648 5.55278 5.57552 5.69043 5.69263 5.73806 5.85138 5.86888 5.89914 6.08030 6.14622 6.20564 6.25382 6.32486 6.40969 6.47810 6.61245 6.73087 6.90993 6.91386 7.03774 7.05284 7.22320 7.31651 7.46313 8.15747 8.40469 8.78232 9.00044 9.29463 10.83983 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.007352 B = 0.003271 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.825136 B = 8558.391054 C =11805.141778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.089 4.089 3 C -0.114 4.114 4 C -0.095 4.095 5 C 0.144 3.856 6 N -0.679 5.679 7 C 0.714 3.286 8 O -0.595 6.595 9 N -0.601 5.601 10 C 0.211 3.789 11 C -0.545 4.545 12 H 0.080 0.920 13 C 0.080 3.920 14 N -0.884 5.884 15 Si 0.868 3.132 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.143 3.857 20 C 0.043 3.957 21 N -0.532 5.532 22 C 0.011 3.989 23 C 0.064 3.936 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.019 3.981 27 C 0.071 3.929 28 F -0.132 7.132 29 C -0.139 4.139 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.417 0.583 36 H 0.037 0.963 37 H 0.019 0.981 38 H 0.268 0.732 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.043 0.957 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.040 0.960 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 13.005 4.654 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.116 4.116 5 C 0.047 3.953 6 N -0.327 5.327 7 C 0.416 3.584 8 O -0.475 6.475 9 N -0.335 5.335 10 C 0.090 3.910 11 C -0.584 4.584 12 H 0.098 0.902 13 C -0.125 4.125 14 N -0.521 5.521 15 Si 0.694 3.306 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.190 1.190 19 C 0.019 3.981 20 C -0.086 4.086 21 N -0.258 5.258 22 C -0.117 4.117 23 C -0.013 4.013 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 C 0.049 3.951 28 F -0.110 7.110 29 C -0.158 4.158 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.256 0.744 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.059 0.941 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.682 13.614 3.855 16.101 hybrid contribution 1.158 -1.510 1.779 2.605 sum -6.524 12.104 5.634 14.860 Atomic orbital electron populations 1.20728 0.90820 1.02632 1.02317 1.19639 0.96109 0.92249 1.01047 1.20942 0.93540 0.97563 1.01255 1.21272 0.93773 0.97651 0.98876 1.17625 0.82989 0.92703 1.02002 1.42691 1.03650 1.31998 1.54410 1.15697 0.82159 0.81740 0.78811 1.90827 1.67506 1.36482 1.52641 1.47027 1.03479 1.26674 1.56274 1.19762 0.92260 0.85764 0.93263 1.21350 1.38044 0.98309 1.00673 0.90178 1.24873 0.95184 0.95402 0.97026 1.69881 1.41492 1.05716 1.35025 0.86984 0.79630 0.78790 0.85167 1.19728 1.20653 1.19009 1.21115 0.97032 0.86130 0.93839 1.22547 0.98015 0.92258 0.95809 1.62116 1.17770 1.05582 1.40299 1.22900 0.89700 0.98999 1.00106 1.22684 1.00956 0.84520 0.93091 1.87959 1.29261 1.43791 1.69764 1.22642 0.85045 0.95441 0.98082 1.22763 1.01182 0.91826 0.95184 1.17547 0.90154 0.80382 1.07051 1.91540 1.80264 1.45185 1.94040 1.20769 0.91318 0.99241 1.04458 0.91193 0.91645 0.91490 0.85480 0.83185 0.74389 0.94480 0.96306 0.92234 0.90058 0.89526 0.90406 0.94632 0.93832 0.88726 0.92139 0.88440 0.92214 0.88702 0.89669 0.94133 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -1.07 5.88 -104.59 -0.62 -1.69 16 3 C -0.11 -1.46 9.69 -39.60 -0.38 -1.84 16 4 C -0.10 -1.50 8.70 -39.41 -0.34 -1.84 16 5 C 0.14 2.55 6.31 -83.58 -0.53 2.02 16 6 N -0.68 -13.09 5.11 -14.16 -0.07 -13.16 16 7 C 0.71 14.56 8.13 -86.92 -0.71 13.85 16 8 O -0.59 -12.69 13.34 5.29 0.07 -12.62 16 9 N -0.60 -11.95 2.46 -180.80 -0.44 -12.40 16 10 C 0.21 4.52 4.03 -5.19 -0.02 4.50 16 11 C -0.55 -14.15 9.94 -34.44 -0.34 -14.50 16 12 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 13 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 14 N -0.88 -25.53 13.96 55.43 0.77 -24.76 16 15 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -5.60 6.54 56.52 0.37 -5.23 16 19 C 0.14 2.50 5.34 -4.04 -0.02 2.48 16 20 C 0.04 0.64 5.28 -3.83 -0.02 0.62 16 21 N -0.53 -7.11 4.73 -234.32 -1.11 -8.22 16 22 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 23 C 0.06 0.72 7.01 37.21 0.26 0.98 16 24 O -0.39 -4.79 10.83 -35.23 -0.38 -5.17 16 25 C 0.07 0.67 7.01 37.21 0.26 0.93 16 26 C 0.02 0.22 5.65 -3.71 -0.02 0.19 16 27 C 0.07 1.19 7.31 -39.25 -0.29 0.90 16 28 F -0.13 -2.47 16.96 2.25 0.04 -2.43 16 29 C -0.14 -1.88 9.67 -39.54 -0.38 -2.27 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.07 0.47 8.08 -51.93 -0.42 0.06 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.15 2.49 6.20 -52.48 -0.33 2.17 16 35 H 0.42 8.10 6.36 -40.82 -0.26 7.84 16 36 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 37 H 0.02 0.40 5.73 -51.93 -0.30 0.10 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.08 1.42 6.45 -51.93 -0.33 1.09 16 40 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 41 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 42 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.20 6.38 -51.93 -0.33 0.87 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 50 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 412.01 15.07 6.21 6.21 Total: -1.00 -30.75 412.01 -10.29 -41.04 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.80 Total: 10.77 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.91 Total: 5.94 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.85 Total: -58.53 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.31 Total: -17.80 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.75 -10.29 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096446394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.735 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds