Wall clock time and date at job start Tue Mar 31 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38272 * 119.92216 * 2 1 4 4 C 1.38152 * 120.10831 * 180.02562 * 3 2 1 5 5 C 1.38792 * 119.95780 * 359.97438 * 4 3 2 6 6 N 1.40073 * 120.08055 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99934 * 325.34083 * 6 5 4 8 8 O 1.21591 * 119.99777 * 4.44028 * 7 6 5 9 9 N 1.34773 * 120.00146 * 184.43545 * 7 6 5 10 10 C 1.46504 * 119.99929 * 0.02562 * 9 7 6 11 11 C 1.50703 * 109.46770 * 90.00269 * 10 9 7 12 12 H 1.07999 * 120.00358 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99731 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00281 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99829 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47182 * 90.00114 * 15 13 11 17 17 H 1.48508 * 109.46760 * 209.99867 * 15 13 11 18 18 H 1.48496 * 109.47098 * 329.99652 * 15 13 11 19 19 C 1.46503 * 119.99879 * 180.02562 * 9 7 6 20 20 C 1.52994 * 109.47436 * 90.00296 * 19 9 7 21 21 N 1.46898 * 109.47520 * 179.97438 * 20 19 9 22 22 C 1.47011 * 110.99864 * 293.63566 * 21 20 19 23 23 C 1.53094 * 109.25869 * 177.60712 * 22 21 20 24 24 O 1.43016 * 109.26017 * 56.84454 * 23 22 21 25 25 C 1.43015 * 113.74059 * 301.33205 * 24 23 22 26 26 C 1.47016 * 111.00247 * 169.99576 * 21 20 19 27 27 C 1.39054 * 119.84545 * 0.02562 * 5 4 3 28 28 F 1.35095 * 120.05428 * 179.97438 * 27 5 4 29 29 C 1.38275 * 119.91972 * 180.22412 * 2 1 3 30 30 H 1.09004 * 109.46961 * 90.00818 * 1 2 3 31 31 H 1.09001 * 109.46998 * 210.00338 * 1 2 3 32 32 H 1.09001 * 109.47369 * 330.00351 * 1 2 3 33 33 H 1.07991 * 119.94774 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.02003 * 179.97438 * 4 3 2 35 35 H 0.96999 * 120.00275 * 145.34632 * 6 5 4 36 36 H 1.09005 * 109.46940 * 209.99697 * 10 9 7 37 37 H 1.08991 * 109.47396 * 329.99999 * 10 9 7 38 38 H 0.97005 * 120.00213 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.46570 * 210.00072 * 19 9 7 40 40 H 1.08999 * 109.47145 * 329.99786 * 19 9 7 41 41 H 1.09005 * 109.46732 * 300.00182 * 20 19 9 42 42 H 1.08999 * 109.47370 * 59.99627 * 20 19 9 43 43 H 1.09001 * 109.50451 * 297.53709 * 22 21 20 44 44 H 1.08994 * 109.50855 * 57.67098 * 22 21 20 45 45 H 1.09004 * 109.50627 * 296.90873 * 23 22 21 46 46 H 1.08999 * 109.54280 * 176.80716 * 23 22 21 47 47 H 1.09006 * 109.50788 * 298.73684 * 25 24 23 48 48 H 1.08999 * 109.54580 * 178.62554 * 25 24 23 49 49 H 1.09002 * 109.50758 * 302.33067 * 26 21 20 50 50 H 1.08998 * 109.50223 * 62.41502 * 26 21 20 51 51 H 1.07997 * 119.97922 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5783 1.2029 -0.0005 5 6 4.2752 0.0027 -0.0005 6 7 5.6760 0.0042 -0.0016 7 6 6.3483 0.9648 -0.6664 8 8 5.7416 1.8750 -1.1972 9 7 7.6930 0.9164 -0.7426 10 6 8.4239 -0.1807 -0.1035 11 6 8.5793 -1.3173 -1.0808 12 1 8.1738 -1.2313 -2.0780 13 6 9.2383 -2.4674 -0.7013 14 7 9.3735 -3.4595 -1.5539 15 14 9.9390 -2.6164 1.0239 16 1 8.9148 -3.2026 1.9253 17 1 11.1363 -3.4947 0.9977 18 1 10.3232 -1.2706 1.5201 19 6 8.4237 1.9608 -1.4647 20 6 8.7749 3.0965 -0.5016 21 7 9.5082 4.1434 -1.2255 22 6 10.8206 3.6544 -1.6724 23 6 11.5240 4.7546 -2.4715 24 8 11.6306 5.9298 -1.6635 25 6 10.3709 6.4338 -1.2113 26 6 9.6557 5.3506 -0.3994 27 6 3.5798 -1.2014 -0.0005 28 9 4.2539 -2.3722 -0.0011 29 6 2.1967 -1.1985 -0.0047 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6547 2.1324 -0.0004 34 1 4.1156 2.1398 -0.0010 35 1 6.1621 -0.6860 0.4760 36 1 9.4087 0.1702 0.2053 37 1 7.8707 -0.5256 0.7700 38 1 9.8368 -4.2689 -1.2868 39 1 9.3396 1.5415 -1.8814 40 1 7.8015 2.3480 -2.2716 41 1 7.8590 3.5157 -0.0849 42 1 9.3972 2.7093 0.3053 43 1 11.4257 3.3913 -0.8048 44 1 10.6861 2.7758 -2.3032 45 1 10.9457 4.9801 -3.3675 46 1 12.5205 4.4175 -2.7570 47 1 9.7589 6.7081 -2.0706 48 1 10.5327 7.3109 -0.5848 49 1 8.6709 5.7100 -0.1009 50 1 10.2415 5.1143 0.4889 51 1 1.6551 -2.1328 -0.0088 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096446394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:06 Heat of formation + Delta-G solvation = -94.398582 kcal Electronic energy + Delta-G solvation = -33702.112943 eV Core-core repulsion = 29129.718758 eV Total energy + Delta-G solvation = -4572.394185 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 365.190 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.92151 -41.79571 -40.56222 -39.84440 -37.64027 -36.50426 -36.06464 -34.61531 -32.60018 -32.16258 -31.54801 -31.19889 -29.61572 -27.79213 -26.62792 -25.02875 -24.63364 -24.11329 -23.53544 -22.37609 -21.37548 -20.84946 -19.56089 -19.16338 -18.47177 -17.87727 -17.67157 -17.30637 -17.13462 -16.78151 -16.59188 -16.43337 -16.25252 -16.04651 -15.98275 -15.53348 -15.27080 -15.05252 -14.91863 -14.66072 -14.55785 -14.37826 -14.29312 -14.21795 -13.84599 -13.53448 -13.21926 -13.08596 -12.97805 -12.83575 -12.65294 -12.56382 -12.47053 -12.37752 -12.31961 -12.14850 -11.86739 -11.77842 -11.47023 -11.32649 -11.02651 -10.85401 -10.71436 -9.83004 -9.68769 -9.43955 -8.94946 -8.35914 -6.45012 0.10912 0.24687 1.34348 1.34453 1.43444 1.52539 2.01571 2.27373 2.58865 2.66666 2.90381 2.97366 3.02248 3.22764 3.75160 3.80177 3.88934 3.96094 3.98308 4.05849 4.19136 4.24361 4.29407 4.30894 4.36095 4.43144 4.45126 4.54128 4.60137 4.66700 4.70439 4.72793 4.73295 4.81266 4.89376 4.93771 4.95844 5.00271 5.02676 5.07018 5.17061 5.32584 5.33888 5.45194 5.51352 5.58264 5.77482 5.91431 5.96298 6.00742 6.14100 6.16474 6.59542 6.76474 7.20133 7.42145 8.80575 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.007352 B = 0.003271 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.825136 B = 8558.391054 C =11805.141778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.076 4.076 3 C -0.106 4.106 4 C -0.104 4.104 5 C 0.110 3.890 6 N -0.682 5.682 7 C 0.709 3.291 8 O -0.609 6.609 9 N -0.606 5.606 10 C 0.221 3.779 11 C -0.544 4.544 12 H 0.027 0.973 13 C 0.022 3.978 14 N -0.938 5.938 15 Si 0.939 3.061 16 H -0.264 1.264 17 H -0.282 1.282 18 H -0.238 1.238 19 C 0.146 3.854 20 C 0.060 3.940 21 N -0.540 5.540 22 C 0.011 3.989 23 C 0.067 3.933 24 O -0.403 6.403 25 C 0.065 3.935 26 C 0.018 3.982 27 C 0.045 3.955 28 F -0.152 7.152 29 C -0.136 4.136 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.161 0.839 34 H 0.138 0.862 35 H 0.412 0.588 36 H 0.052 0.948 37 H 0.034 0.966 38 H 0.269 0.731 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.114 0.886 47 H 0.062 0.938 48 H 0.120 0.880 49 H 0.095 0.905 50 H 0.039 0.961 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 14.731 6.589 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.125 4.125 5 C 0.014 3.986 6 N -0.330 5.330 7 C 0.411 3.589 8 O -0.490 6.490 9 N -0.339 5.339 10 C 0.099 3.901 11 C -0.582 4.582 12 H 0.045 0.955 13 C -0.177 4.177 14 N -0.577 5.577 15 Si 0.761 3.239 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.161 1.161 19 C 0.022 3.978 20 C -0.069 4.069 21 N -0.266 5.266 22 C -0.118 4.118 23 C -0.010 4.010 24 O -0.322 6.322 25 C -0.012 4.012 26 C -0.110 4.110 27 C 0.023 3.977 28 F -0.130 7.130 29 C -0.155 4.155 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.178 0.822 34 H 0.155 0.845 35 H 0.250 0.750 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.132 0.868 47 H 0.080 0.920 48 H 0.138 0.862 49 H 0.113 0.887 50 H 0.057 0.943 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.143 15.380 5.791 18.806 hybrid contribution 1.426 -2.014 1.059 2.685 sum -7.718 13.365 6.850 16.885 Atomic orbital electron populations 1.20840 0.87472 1.04444 1.03584 1.20128 0.98301 0.91113 0.98117 1.21334 0.92293 0.99472 0.99317 1.21279 0.95175 0.96371 0.99675 1.17944 0.82257 0.93913 1.04526 1.42663 1.04641 1.31397 1.54272 1.15837 0.82244 0.81955 0.78879 1.90797 1.67724 1.37116 1.53344 1.47065 1.03550 1.26801 1.56472 1.19563 0.93316 0.84734 0.92471 1.21446 1.37284 1.00159 0.99341 0.95480 1.25788 0.95478 0.94698 1.01754 1.70048 1.43168 1.06662 1.37789 0.85855 0.78707 0.80081 0.79270 1.18851 1.20747 1.16057 1.21141 0.96153 0.86446 0.94064 1.22259 0.98035 0.91731 0.94903 1.62111 1.18185 1.05707 1.40602 1.22923 0.89360 0.99470 0.99999 1.22733 1.01758 0.83808 0.92680 1.87944 1.30345 1.43959 1.69923 1.22793 0.84329 0.95649 0.98415 1.22854 1.01947 0.91127 0.95025 1.17925 0.91449 0.79490 1.08867 1.91480 1.80946 1.46179 1.94444 1.21127 0.89949 1.01143 1.03236 0.89975 0.90192 0.89473 0.82162 0.84461 0.74973 0.92971 0.94789 0.92167 0.90486 0.91012 0.90881 0.94627 0.94294 0.89473 0.91903 0.86784 0.91964 0.86241 0.88701 0.94289 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.08 -1.60 5.88 -19.85 -0.12 -1.71 16 3 C -0.11 -2.45 9.69 22.26 0.22 -2.24 16 4 C -0.10 -3.27 8.70 22.38 0.19 -3.08 16 5 C 0.11 3.97 6.31 38.15 0.24 4.21 16 6 N -0.68 -27.35 5.11 -316.99 -1.62 -28.97 16 7 C 0.71 29.99 8.13 179.06 1.45 31.44 16 8 O -0.61 -26.85 13.34 -4.00 -0.05 -26.90 16 9 N -0.61 -24.81 2.46 -844.19 -2.07 -26.89 16 10 C 0.22 9.56 4.03 85.63 0.35 9.91 16 11 C -0.54 -29.36 9.94 25.60 0.25 -29.11 16 12 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 13 C 0.02 1.23 5.47 84.66 0.46 1.69 16 14 N -0.94 -56.30 13.96 21.45 0.30 -56.00 16 15 Si 0.94 40.05 27.47 68.60 1.88 41.93 16 16 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 19 C 0.15 5.25 5.34 86.38 0.46 5.72 16 20 C 0.06 1.79 5.28 86.30 0.46 2.25 16 21 N -0.54 -14.16 4.73 -895.24 -4.23 -18.40 16 22 C 0.01 0.26 5.44 86.31 0.47 0.73 16 23 C 0.07 1.42 7.01 72.01 0.50 1.92 16 24 O -0.40 -9.26 10.83 -148.98 -1.61 -10.87 16 25 C 0.06 1.22 7.01 72.01 0.50 1.72 16 26 C 0.02 0.39 5.65 86.31 0.49 0.88 16 27 C 0.04 1.52 7.31 22.48 0.16 1.68 16 28 F -0.15 -5.92 16.96 44.97 0.76 -5.16 16 29 C -0.14 -3.48 9.67 22.29 0.22 -3.26 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 32 H 0.09 0.79 8.08 -2.39 -0.02 0.78 16 33 H 0.16 2.62 8.06 -2.92 -0.02 2.60 16 34 H 0.14 4.63 6.20 -2.91 -0.02 4.61 16 35 H 0.41 16.68 6.36 -92.71 -0.59 16.09 16 36 H 0.05 2.13 7.13 -2.38 -0.02 2.11 16 37 H 0.03 1.40 5.73 -2.39 -0.01 1.39 16 38 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 39 H 0.08 2.81 6.45 -2.39 -0.02 2.79 16 40 H 0.07 2.79 7.42 -2.39 -0.02 2.77 16 41 H 0.07 2.26 8.04 -2.38 -0.02 2.24 16 42 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 2.25 6.38 -2.39 -0.02 2.24 16 45 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 48 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 50 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 51 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.50 412.01 0.69 -69.81 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.30 Total: 39.30 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 7.03 Total: 22.14 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -7.62 Total: -130.26 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.67 Total: -37.77 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.76 Total: -5.16 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.88 Total: 41.93 kcal Total: -70.50 0.69 -69.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096446394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.587 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds