Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99795 * 2 1 4 4 H 1.48508 * 109.47155 * 269.99673 * 3 2 1 5 5 H 1.48493 * 109.47509 * 30.00018 * 3 2 1 6 6 H 1.48503 * 109.46909 * 150.00023 * 3 2 1 7 7 C 1.37871 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00295 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00112 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47194 * 179.97438 * 9 7 2 11 11 C 1.34783 * 120.00069 * 89.99769 * 10 9 7 12 12 O 1.21286 * 119.99740 * 5.19704 * 11 10 9 13 13 C 1.50694 * 119.99821 * 185.19344 * 11 10 9 14 14 O 1.42907 * 109.47054 * 178.98174 * 13 11 10 15 15 C 1.34900 * 117.00403 * 180.02562 * 14 13 11 16 16 O 1.21625 * 119.99908 * 0.02562 * 15 14 13 17 17 C 1.46233 * 120.00250 * 180.02562 * 15 14 13 18 18 C 1.34919 * 120.00015 * 187.41719 * 17 15 14 19 19 C 1.47170 * 120.00022 * 10.57355 * 18 17 15 20 20 C 1.39855 * 120.17357 * 42.71045 * 19 18 17 21 21 C 1.37877 * 119.82613 * 179.97438 * 20 19 18 22 22 C 1.38402 * 120.17749 * 359.97438 * 21 20 19 23 23 C 1.38408 * 120.34508 * 0.02562 * 22 21 20 24 24 C 1.37889 * 120.17086 * 0.02562 * 23 22 21 25 25 C 1.39927 * 120.00053 * 269.99753 * 10 9 7 26 26 C 1.38872 * 120.06939 * 108.71770 * 25 10 9 27 27 C 1.38118 * 119.92907 * 179.74809 * 26 25 10 28 28 C 1.38279 * 120.06874 * 0.53039 * 27 26 25 29 29 C 1.38290 * 120.14029 * 359.74115 * 28 27 26 30 30 C 1.38106 * 120.06987 * 359.97438 * 29 28 27 31 31 H 0.97004 * 119.99914 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.46799 * 59.99580 * 9 7 2 33 33 H 1.09001 * 109.46916 * 299.99334 * 9 7 2 34 34 H 1.09000 * 109.47497 * 58.98669 * 13 11 10 35 35 H 1.08999 * 109.47386 * 298.98190 * 13 11 10 36 36 H 1.07995 * 120.00210 * 7.41707 * 17 15 14 37 37 H 1.07995 * 119.99996 * 190.57127 * 18 17 15 38 38 H 1.08006 * 120.08884 * 359.96129 * 20 19 18 39 39 H 1.08009 * 119.91509 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.83427 * 179.74309 * 22 21 20 41 41 H 1.08001 * 119.91410 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.08349 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.03557 * 0.02562 * 26 25 10 44 44 H 1.07994 * 119.96479 * 180.27496 * 27 26 25 45 45 H 1.07991 * 119.93242 * 179.72650 * 28 27 26 46 46 H 1.07998 * 119.96156 * 180.02562 * 29 28 27 47 47 H 1.08001 * 120.03759 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 4.2249 -3.2104 -1.1674 12 8 4.1141 -2.6102 -2.2155 13 6 4.6142 -4.6662 -1.1702 14 8 4.7730 -5.1142 -2.5179 15 6 5.1227 -6.4047 -2.6971 16 8 5.2877 -7.1294 -1.7344 17 6 5.3034 -6.9323 -4.0489 18 6 5.5052 -8.2531 -4.2362 19 6 5.3139 -9.1924 -3.1195 20 6 4.2150 -9.0545 -2.2654 21 6 4.0425 -9.9388 -1.2217 22 6 4.9529 -10.9612 -1.0184 23 6 6.0429 -11.1044 -1.8592 24 6 6.2300 -10.2275 -2.9068 25 6 4.2326 -3.2351 1.2117 26 6 3.3866 -4.2575 1.6209 27 6 3.6221 -4.9105 2.8150 28 6 4.6925 -4.5397 3.6080 29 6 5.5336 -3.5182 3.2060 30 6 5.3069 -2.8654 2.0102 31 1 -0.4850 0.8401 -0.0004 32 1 3.8745 -0.6808 0.8905 33 1 3.8752 -0.6797 -0.8895 34 1 3.8351 -5.2517 -0.6821 35 1 5.5539 -4.7920 -0.6324 36 1 5.2752 -6.2648 -4.8974 37 1 5.8071 -8.6211 -5.2056 38 1 3.5035 -8.2573 -2.4228 39 1 3.1941 -9.8339 -0.5615 40 1 4.8146 -11.6483 -0.1966 41 1 6.7493 -11.9045 -1.6939 42 1 7.0808 -10.3407 -3.5623 43 1 2.5480 -4.5448 1.0040 44 1 2.9671 -5.7086 3.1317 45 1 4.8720 -5.0487 4.5434 46 1 6.3690 -3.2313 3.8274 47 1 5.9638 -2.0674 1.6970 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096488215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = -19.972704 kcal Electronic energy + Delta-G solvation = -31937.695973 eV Core-core repulsion = 27631.172515 eV Total energy + Delta-G solvation = -4306.523458 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.85962 -39.97935 -39.08455 -38.17960 -36.56142 -34.99530 -34.16660 -32.68388 -31.06175 -30.84972 -30.27501 -29.78645 -29.01534 -27.17811 -24.66388 -22.83827 -22.63131 -22.56666 -22.18795 -21.81923 -19.77494 -19.20358 -18.13112 -17.48188 -17.05747 -16.95932 -16.55899 -16.06126 -16.01291 -15.48423 -15.26494 -15.05041 -14.81428 -14.36663 -14.18228 -14.05306 -13.98455 -13.55342 -13.38676 -13.24154 -13.09398 -12.87947 -12.58366 -12.51003 -12.38174 -12.30526 -11.86976 -11.42486 -11.39555 -11.30494 -11.18936 -10.91672 -10.63111 -10.59223 -10.58405 -10.25697 -10.18126 -9.63565 -9.53517 -8.96171 -8.77519 -8.68018 -8.60815 -8.39495 -7.88772 -6.14024 -4.13911 0.35265 1.32764 1.44666 1.55968 1.59996 2.48912 2.83730 3.01834 3.26075 3.31639 3.33481 3.66347 3.71731 3.92354 4.34750 4.40966 4.61409 4.71159 4.80280 4.84923 4.95775 5.07484 5.08688 5.10813 5.18808 5.21659 5.24062 5.28189 5.29483 5.40588 5.58970 5.68095 5.71938 5.73152 5.89040 5.90489 5.94518 6.17198 6.31187 6.33302 6.38598 6.44043 6.49706 6.59532 6.65010 6.68005 6.83449 6.84815 6.97774 7.19835 7.50559 7.72399 8.03166 8.37298 8.66034 8.87646 9.44515 10.99047 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.002657 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.648736 B =10534.633343 C =11864.300761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.219 3.781 10 N -0.552 5.552 11 C 0.520 3.480 12 O -0.506 6.506 13 C 0.053 3.947 14 O -0.323 6.323 15 C 0.485 3.515 16 O -0.494 6.494 17 C -0.185 4.185 18 C -0.012 4.012 19 C -0.086 4.086 20 C -0.040 4.040 21 C -0.130 4.130 22 C -0.105 4.105 23 C -0.136 4.136 24 C -0.096 4.096 25 C 0.149 3.851 26 C -0.116 4.116 27 C -0.108 4.108 28 C -0.127 4.127 29 C -0.111 4.111 30 C -0.123 4.123 31 H 0.266 0.734 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.584 -20.456 -0.828 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.101 3.899 10 N -0.282 5.282 11 C 0.306 3.694 12 O -0.380 6.380 13 C -0.025 4.025 14 O -0.238 6.238 15 C 0.331 3.669 16 O -0.384 6.384 17 C -0.203 4.203 18 C -0.030 4.030 19 C -0.086 4.086 20 C -0.058 4.058 21 C -0.148 4.148 22 C -0.123 4.123 23 C -0.154 4.154 24 C -0.114 4.114 25 C 0.057 3.943 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.145 4.145 29 C -0.130 4.130 30 C -0.143 4.143 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.383 -20.130 -1.136 24.200 hybrid contribution 0.172 1.084 0.346 1.151 sum 13.555 -19.046 -0.790 23.391 Atomic orbital electron populations 1.69887 1.06156 1.27108 1.50028 1.24809 0.94779 0.98890 0.94266 0.86875 0.80245 0.83801 0.78981 1.19723 1.20900 1.19009 1.21236 0.88753 0.95051 1.52002 0.90593 1.19852 0.96064 0.76001 0.98004 1.45466 1.64459 1.15965 1.02277 1.19765 0.78214 0.87312 0.84094 1.90720 1.49890 1.67060 1.30331 1.22443 1.03639 0.94587 0.81848 1.86238 1.79151 1.28137 1.30276 1.21534 0.74064 0.80077 0.91202 1.90965 1.46789 1.57548 1.43052 1.22324 1.07463 0.96273 0.94277 1.22549 0.90541 0.91836 0.98090 1.18931 0.96743 0.96220 0.96667 1.21120 0.96054 0.95724 0.92920 1.20991 0.99982 0.95609 0.98238 1.21222 0.94474 0.97854 0.98766 1.20962 0.98393 0.99909 0.96132 1.21159 0.98192 0.93936 0.98088 1.17736 0.94226 0.94118 0.88183 1.21439 0.98198 0.96849 0.97082 1.21013 0.97676 0.99726 0.94199 1.21112 0.95762 0.97925 0.99738 1.20969 0.99689 0.96355 0.95957 1.21302 0.97021 1.00659 0.95294 0.92429 0.94656 0.93822 0.88537 0.88902 0.83224 0.83557 0.86876 0.86088 0.86307 0.86201 0.86073 0.85608 0.85860 0.86171 0.85937 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 10 N -0.55 -11.64 2.49 -114.74 -0.29 -11.93 16 11 C 0.52 10.95 7.67 -10.99 -0.08 10.87 16 12 O -0.51 -12.55 16.05 -14.35 -0.23 -12.78 16 13 C 0.05 0.89 4.51 36.00 0.16 1.05 16 14 O -0.32 -5.42 9.65 -47.80 -0.46 -5.88 16 15 C 0.49 6.86 6.86 33.94 0.23 7.09 16 16 O -0.49 -7.51 11.85 -19.36 -0.23 -7.74 16 17 C -0.18 -1.92 10.04 -37.55 -0.38 -2.30 16 18 C -0.01 -0.10 9.82 -37.14 -0.36 -0.47 16 19 C -0.09 -0.91 4.59 -105.06 -0.48 -1.39 16 20 C -0.04 -0.47 6.56 -39.11 -0.26 -0.73 16 21 C -0.13 -1.41 10.03 -39.65 -0.40 -1.81 16 22 C -0.11 -1.01 10.04 -39.46 -0.40 -1.40 16 23 C -0.14 -1.23 10.03 -39.65 -0.40 -1.63 16 24 C -0.10 -0.89 9.80 -39.11 -0.38 -1.28 16 25 C 0.15 2.65 4.39 -83.69 -0.37 2.28 16 26 C -0.12 -1.89 8.47 -39.39 -0.33 -2.23 16 27 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 28 C -0.13 -1.55 10.04 -39.55 -0.40 -1.94 16 29 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 30 C -0.12 -1.88 9.81 -39.40 -0.39 -2.27 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.04 0.83 7.01 -51.93 -0.36 0.47 16 33 H 0.04 1.12 6.78 -51.93 -0.35 0.77 16 34 H 0.10 1.54 6.80 -51.93 -0.35 1.18 16 35 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.11 1.39 6.90 -52.48 -0.36 1.03 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 43 H 0.13 2.11 7.79 -52.49 -0.41 1.70 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -35.54 404.90 -10.56 -46.11 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.08 Total: 3.85 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -5.49 Total: -7.88 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.49 Total: -38.51 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.92 Total: -26.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.54 -10.56 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096488215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.133 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds