Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34770 * 120.00256 * 84.99846 * 12 2 1 14 14 O 1.21562 * 120.00144 * 359.97438 * 13 12 2 15 15 C 1.47811 * 120.00028 * 180.02562 * 13 12 2 16 16 C 1.39616 * 120.13026 * 359.72161 * 15 13 12 17 17 C 1.37891 * 119.86000 * 179.70132 * 16 15 13 18 18 C 1.38504 * 120.13347 * 0.59626 * 17 16 15 19 19 Br 1.89100 * 119.86501 * 179.69764 * 18 17 16 20 20 C 1.38454 * 120.26852 * 359.68352 * 18 17 16 21 21 C 1.37923 * 120.13837 * 0.02562 * 20 18 17 22 22 C 1.50697 * 120.07035 * 179.97438 * 21 20 18 23 23 F 1.39896 * 109.47375 * 0.02562 * 22 21 20 24 24 F 1.39898 * 109.47514 * 120.02273 * 22 21 20 25 25 F 1.39908 * 109.46969 * 240.02060 * 22 21 20 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99374 * 264.99912 * 12 2 1 31 31 H 1.07998 * 120.07389 * 0.02562 * 16 15 13 32 32 H 1.08006 * 119.93569 * 180.29967 * 17 16 15 33 33 H 1.08004 * 119.92955 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8576 1.1613 -2.4118 15 6 2.6393 -0.7149 -3.5641 16 6 2.9772 -2.0682 -3.5033 17 6 3.4300 -2.7143 -4.6343 18 6 3.5615 -2.0205 -5.8257 19 35 4.1912 -2.9119 -7.3699 20 6 3.2336 -0.6769 -5.8908 21 6 2.7739 -0.0211 -4.7679 22 6 2.4180 1.4415 -4.8403 23 9 2.6347 1.9104 -6.1404 24 9 1.0711 1.6110 -4.5021 25 9 3.2176 2.1609 -3.9456 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.9032 -0.5282 4.4375 30 1 2.2491 -1.6317 -1.1527 31 1 2.8792 -2.6092 -2.5738 32 1 3.6871 -3.7624 -4.5897 33 1 3.3379 -0.1413 -6.8229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096494138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = -147.132382 kcal Electronic energy + Delta-G solvation = -25083.605911 eV Core-core repulsion = 20741.184931 eV Total energy + Delta-G solvation = -4342.420980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.998 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.87451 -47.46228 -47.17282 -40.36633 -38.48776 -35.25656 -33.15582 -32.74994 -32.02543 -30.47685 -29.30019 -26.28272 -25.26118 -23.92140 -22.54080 -21.28524 -19.93249 -18.87527 -18.14402 -18.11145 -17.55273 -16.40252 -16.09612 -15.51848 -15.26860 -14.97625 -14.81322 -14.36669 -14.09109 -14.04067 -13.64304 -13.53787 -13.45644 -13.34171 -13.19406 -12.96387 -12.89017 -12.28213 -12.11900 -11.89903 -11.64773 -11.44742 -11.19640 -10.87412 -10.74646 -10.25137 -9.83387 -9.72496 -9.45013 -9.32708 -9.21296 -8.83441 -8.32844 -6.27260 -4.30936 0.15095 0.58569 1.07152 2.59227 2.71794 3.20046 3.32764 3.36797 3.49939 3.55510 3.78971 4.09509 4.26646 4.40083 4.51225 4.63879 4.67537 4.83486 5.03748 5.07774 5.22398 5.48752 5.62298 5.68005 6.04554 6.23806 6.30012 6.47161 6.77488 7.03029 7.13250 7.40323 7.96044 8.35460 8.57473 8.71944 9.32578 10.84619 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.003123 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.825899 B = 8964.190369 C =10316.503953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.684 5.684 13 C 0.532 3.468 14 O -0.526 6.526 15 C -0.058 4.058 16 C -0.083 4.083 17 C -0.065 4.065 18 C -0.083 4.083 19 Br -0.034 7.034 20 C -0.054 4.054 21 C -0.131 4.131 22 C 0.520 3.480 23 F -0.188 7.188 24 F -0.160 7.160 25 F -0.159 7.159 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.268 0.732 30 H 0.395 0.605 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -5.563 -22.827 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.332 5.332 13 C 0.315 3.685 14 O -0.405 6.405 15 C -0.061 4.061 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.163 4.163 19 Br 0.052 6.948 20 C -0.074 4.074 21 C -0.134 4.134 22 C 0.465 3.535 23 F -0.170 7.170 24 F -0.141 7.141 25 F -0.140 7.140 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.230 0.770 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.540 -5.014 -23.179 23.978 hybrid contribution -0.648 0.592 0.621 1.076 sum 2.892 -4.422 -22.558 23.169 Atomic orbital electron populations 1.22455 0.98936 1.01013 0.99616 1.19211 0.90358 0.94834 0.82186 0.92894 1.20983 1.33619 1.14598 0.88439 0.90126 1.24807 0.95402 0.96678 0.95466 1.69857 1.44671 1.40023 0.98100 0.86889 0.80526 0.83579 0.77628 1.20226 1.22060 1.18538 1.46116 1.63927 1.13789 1.09415 1.18090 0.79898 0.87092 0.83373 1.90854 1.50266 1.14856 1.84491 1.20277 0.97683 0.94513 0.93676 1.21480 0.96651 0.92798 0.99366 1.21315 0.95859 1.00803 0.90504 1.21879 1.05452 0.95047 0.93886 1.96783 1.86870 1.77161 1.34002 1.20906 0.95245 0.92879 0.98378 1.20093 1.05037 0.93344 0.94929 1.17744 0.76056 0.86586 0.73116 1.93135 1.94765 1.90293 1.38759 1.93250 1.32911 1.96009 1.91947 1.93264 1.73315 1.79631 1.67785 0.92718 0.93228 0.94310 0.92174 0.76987 0.82984 0.83338 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.97 37.16 0.33 -3.17 16 2 C 0.24 5.43 2.15 -69.08 -0.15 5.28 16 3 H 0.05 1.35 6.63 -51.93 -0.34 1.00 16 4 C -0.54 -14.00 9.31 -34.44 -0.32 -14.32 16 5 H 0.08 2.18 7.98 -52.48 -0.42 1.76 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 8 Si 0.88 21.31 24.37 -169.99 -4.14 17.16 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.68 -12.80 5.02 -55.89 -0.28 -13.08 16 13 C 0.53 9.71 7.55 -12.35 -0.09 9.62 16 14 O -0.53 -11.31 10.96 5.31 0.06 -11.25 16 15 C -0.06 -0.81 5.85 -104.96 -0.61 -1.43 16 16 C -0.08 -0.88 9.54 -39.19 -0.37 -1.26 16 17 C -0.07 -0.57 9.77 -39.61 -0.39 -0.96 16 18 C -0.08 -0.79 6.23 -39.40 -0.25 -1.03 16 19 Br -0.03 -0.27 33.69 -68.01 -2.29 -2.57 16 20 C -0.05 -0.58 9.16 -39.62 -0.36 -0.95 16 21 C -0.13 -1.77 5.40 -104.23 -0.56 -2.34 16 22 C 0.52 8.05 2.78 36.00 0.10 8.15 16 23 F -0.19 -2.52 15.97 2.25 0.04 -2.48 16 24 F -0.16 -2.80 15.01 2.25 0.03 -2.76 16 25 F -0.16 -2.83 15.02 2.25 0.03 -2.80 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.40 6.22 6.57 -40.82 -0.27 5.95 16 31 H 0.15 1.33 6.40 -52.49 -0.34 0.99 16 32 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.15 1.39 7.15 -52.48 -0.38 1.01 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -30.51 307.32 -6.28 -36.80 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -2.36 Total: 1.57 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.77 Total: -0.29 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.49 Total: -38.01 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.06 Total: -11.25 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.10 Total: -8.04 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.16 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.29 Total: -2.57 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.51 -6.28 -36.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096494138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.336 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds