Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47239 * 2 1 4 4 C 1.50695 * 109.47162 * 239.99445 * 2 1 3 5 5 H 1.08000 * 120.00347 * 275.00794 * 4 2 1 6 6 C 1.37884 * 119.99520 * 94.99881 * 4 2 1 7 7 N 1.31512 * 119.99753 * 184.91256 * 6 4 2 8 8 Si 1.86793 * 120.00316 * 4.92311 * 6 4 2 9 9 H 1.48497 * 109.47621 * 84.82849 * 8 6 4 10 10 H 1.48500 * 109.47273 * 204.82983 * 8 6 4 11 11 H 1.48506 * 109.46857 * 324.82546 * 8 6 4 12 12 N 1.46494 * 109.46982 * 119.99453 * 2 1 3 13 13 C 1.34783 * 120.00384 * 275.27567 * 12 2 1 14 14 O 1.21552 * 119.99700 * 359.72415 * 13 12 2 15 15 C 1.47796 * 119.99932 * 179.72628 * 13 12 2 16 16 C 1.39630 * 120.13788 * 0.02562 * 15 13 12 17 17 C 1.37883 * 119.86420 * 179.97438 * 16 15 13 18 18 C 1.38497 * 120.13715 * 359.96742 * 17 16 15 19 19 Br 1.89104 * 119.86726 * 180.02562 * 18 17 16 20 20 C 1.38459 * 120.26925 * 0.02562 * 18 17 16 21 21 C 1.37925 * 120.13837 * 359.77990 * 20 18 17 22 22 C 1.50702 * 120.07412 * 180.24002 * 21 20 18 23 23 F 1.39902 * 109.46695 * 0.20677 * 22 21 20 24 24 F 1.39891 * 109.47095 * 120.20743 * 22 21 20 25 25 F 1.39899 * 109.46845 * 240.21048 * 22 21 20 26 26 H 1.09003 * 109.47583 * 55.03755 * 1 2 3 27 27 H 1.08995 * 109.47327 * 175.04341 * 1 2 3 28 28 H 1.09010 * 109.47030 * 295.04043 * 1 2 3 29 29 H 0.97002 * 120.00648 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00139 * 95.00182 * 12 2 1 31 31 H 1.08001 * 120.06510 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.93429 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.93354 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7823 10 1 2.1058 2.3989 -3.6929 11 1 1.1986 2.3274 -1.4451 12 7 2.0183 -0.6905 1.1962 13 6 2.1417 -0.0194 2.3586 14 8 1.8527 1.1600 2.4131 15 6 2.6286 -0.7176 3.5668 16 6 2.9620 -2.0722 3.5072 17 6 3.4162 -2.7179 4.6377 18 6 3.5426 -2.0254 5.8305 19 35 4.1669 -2.9183 7.3761 20 6 3.2137 -0.6821 5.8959 21 6 2.7621 -0.0241 4.7709 22 6 2.4097 1.4394 4.8424 23 9 2.6256 1.9080 6.1428 24 9 3.2125 2.1565 3.9490 25 9 1.0638 1.6121 4.5020 26 1 -0.3634 0.5889 -0.8422 27 1 -0.3634 -1.0238 -0.0888 28 1 -0.3634 0.4350 0.9312 29 1 2.9370 -0.1051 -4.2554 30 1 2.2490 -1.6316 1.1527 31 1 2.8643 -2.6131 2.5775 32 1 3.6748 -3.7655 4.5928 33 1 3.3148 -0.1472 6.8287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096494139.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = -155.873960 kcal Electronic energy + Delta-G solvation = -25121.231298 eV Core-core repulsion = 20778.431254 eV Total energy + Delta-G solvation = -4342.800043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.998 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.85586 -47.44374 -47.15439 -40.32697 -38.43843 -35.14059 -33.11768 -32.70625 -32.02594 -30.43299 -29.19729 -26.24423 -25.38557 -23.87239 -22.46419 -21.13834 -19.85901 -18.85292 -18.12499 -18.09889 -17.60272 -16.52377 -16.07151 -15.42218 -15.21067 -14.94057 -14.77204 -14.20973 -14.06930 -14.00427 -13.62183 -13.51439 -13.43323 -13.31145 -13.18212 -12.88206 -12.59324 -12.47261 -12.08584 -11.64323 -11.59935 -11.23871 -11.14762 -10.88307 -10.73220 -10.65191 -9.94587 -9.70166 -9.51088 -9.29872 -9.18930 -8.77982 -8.26923 -6.30793 -4.35765 0.18006 0.60946 1.08940 2.62341 2.74063 3.22452 3.31170 3.38440 3.55196 3.60243 3.81136 4.12042 4.26984 4.42309 4.53507 4.66019 4.70019 4.85178 5.02257 5.15834 5.24784 5.51174 5.65381 5.71464 6.07117 6.26240 6.44377 6.59227 6.83752 7.05860 7.24542 7.40514 7.95664 8.38279 8.62807 8.71809 9.30345 10.80496 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003247 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.164659 B = 8621.528312 C = 9852.441834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.084 3.916 7 N -0.886 5.886 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.687 5.687 13 C 0.528 3.472 14 O -0.530 6.530 15 C -0.057 4.057 16 C -0.084 4.084 17 C -0.065 4.065 18 C -0.083 4.083 19 Br -0.035 7.035 20 C -0.054 4.054 21 C -0.132 4.132 22 C 0.520 3.480 23 F -0.188 7.188 24 F -0.159 7.159 25 F -0.160 7.160 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.269 0.731 30 H 0.393 0.607 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -5.854 22.254 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.072 0.928 4 C -0.571 4.571 5 H 0.098 0.902 6 C -0.121 4.121 7 N -0.522 5.522 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.335 5.335 13 C 0.312 3.688 14 O -0.409 6.409 15 C -0.061 4.061 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.163 4.163 19 Br 0.051 6.949 20 C -0.074 4.074 21 C -0.135 4.135 22 C 0.465 3.535 23 F -0.170 7.170 24 F -0.140 7.140 25 F -0.141 7.141 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.228 0.772 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.699 -5.279 22.598 23.363 hybrid contribution 0.010 0.811 -0.475 0.940 sum 2.709 -4.468 22.123 22.732 Atomic orbital electron populations 1.22219 0.98190 1.00724 0.99546 1.19233 0.91152 0.94484 0.82202 0.92817 1.20962 1.45727 0.95609 0.94850 0.90238 1.24926 0.93401 0.98708 0.95111 1.69869 1.44242 1.36328 1.01711 0.86911 0.79976 0.85681 0.77512 1.19715 1.21084 1.18358 1.46637 1.63642 1.13884 1.09333 1.18177 0.79943 0.87191 0.83455 1.90841 1.50499 1.14905 1.84622 1.20341 0.97511 0.94508 0.93765 1.21481 0.96666 0.92819 0.99348 1.21306 0.95878 1.00792 0.90520 1.21869 1.05563 0.95059 0.93832 1.96778 1.87079 1.77105 1.33926 1.20903 0.95294 0.92862 0.98365 1.20102 1.05146 0.93313 0.94932 1.17743 0.76044 0.86618 0.73087 1.93135 1.94783 1.90315 1.38755 1.93259 1.73139 1.79748 1.67873 1.93249 1.32983 1.95979 1.91892 0.92670 0.93323 0.95013 0.92106 0.77209 0.82986 0.83373 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.46 37.16 0.35 -2.78 16 2 C 0.23 5.27 2.22 -69.09 -0.15 5.12 16 3 H 0.05 1.35 4.73 -51.93 -0.25 1.11 16 4 C -0.53 -13.75 9.05 -34.44 -0.31 -14.06 16 5 H 0.08 2.14 8.06 -52.49 -0.42 1.71 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 8 Si 0.87 21.14 26.99 -169.99 -4.59 16.55 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.26 -6.20 6.82 56.52 0.39 -5.81 16 12 N -0.69 -13.01 5.02 -55.90 -0.28 -13.29 16 13 C 0.53 9.84 7.54 -12.35 -0.09 9.75 16 14 O -0.53 -11.57 10.96 5.32 0.06 -11.52 16 15 C -0.06 -0.83 5.85 -104.96 -0.61 -1.44 16 16 C -0.08 -0.91 9.54 -39.19 -0.37 -1.28 16 17 C -0.07 -0.59 9.77 -39.62 -0.39 -0.98 16 18 C -0.08 -0.81 6.23 -39.40 -0.25 -1.06 16 19 Br -0.03 -0.29 33.69 -68.01 -2.29 -2.58 16 20 C -0.05 -0.60 9.16 -39.61 -0.36 -0.96 16 21 C -0.13 -1.83 5.40 -104.23 -0.56 -2.39 16 22 C 0.52 8.21 2.78 36.01 0.10 8.31 16 23 F -0.19 -2.57 15.97 2.25 0.04 -2.53 16 24 F -0.16 -2.90 15.02 2.25 0.03 -2.87 16 25 F -0.16 -2.83 15.01 2.25 0.03 -2.80 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.39 6.27 6.63 -40.82 -0.27 6.00 16 31 H 0.15 1.37 6.40 -52.49 -0.34 1.04 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.15 1.42 7.15 -52.48 -0.38 1.05 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -30.30 313.88 -6.74 -37.04 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -2.49 Total: 1.45 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.75 Total: 0.40 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.49 Total: -37.87 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.06 Total: -11.52 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.10 Total: -8.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.59 Total: 16.55 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.29 Total: -2.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.30 -6.74 -37.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096494139.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.835 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds