Wall clock time and date at job start Tue Mar 31 2020 05:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47120 * 2 1 4 4 C 1.50694 * 109.47411 * 120.00084 * 2 1 3 5 5 H 1.08004 * 119.99918 * 114.79374 * 4 2 1 6 6 C 1.37879 * 120.00257 * 294.80066 * 4 2 1 7 7 N 1.31516 * 119.99696 * 359.23304 * 6 4 2 8 8 Si 1.86796 * 120.00209 * 179.51019 * 6 4 2 9 9 H 1.48494 * 109.47425 * 264.73743 * 8 6 4 10 10 H 1.48499 * 109.47048 * 24.73834 * 8 6 4 11 11 H 1.48497 * 109.47088 * 144.73336 * 8 6 4 12 12 N 1.46503 * 109.46918 * 240.00182 * 2 1 3 13 13 C 1.46493 * 119.99894 * 299.99913 * 12 2 1 14 14 C 1.34780 * 119.99742 * 119.99819 * 12 2 1 15 15 O 1.21584 * 120.00092 * 0.02562 * 14 12 2 16 16 N 1.34775 * 119.99677 * 179.97438 * 14 12 2 17 17 C 1.40068 * 119.99911 * 185.03826 * 16 14 12 18 18 C 1.38880 * 119.99725 * 213.77233 * 17 16 14 19 19 C 1.38035 * 119.99954 * 179.76781 * 18 17 16 20 20 C 1.38888 * 119.99504 * 0.50905 * 19 18 17 21 21 N 1.40140 * 120.00086 * 179.76526 * 20 19 18 22 22 N 1.39870 * 125.47980 * 144.66538 * 21 20 19 23 23 C 1.30314 * 110.09608 * 179.84166 * 22 21 20 24 24 C 1.45934 * 107.81810 * 0.41793 * 23 22 21 25 25 C 1.39937 * 134.02786 * 179.71809 * 24 23 22 26 26 C 1.36485 * 119.63674 * 180.02562 * 25 24 23 27 27 C 1.38958 * 120.62392 * 359.97438 * 26 25 24 28 28 C 1.36623 * 120.81451 * 359.97438 * 27 26 25 29 29 C 1.37265 * 125.47689 * 324.98380 * 21 20 19 30 30 C 1.38884 * 120.00226 * 359.74313 * 20 19 18 31 31 C 1.38035 * 119.99671 * 0.02562 * 30 20 19 32 32 H 1.08995 * 109.47419 * 57.52128 * 1 2 3 33 33 H 1.09000 * 109.47521 * 177.52647 * 1 2 3 34 34 H 1.09006 * 109.46943 * 297.52278 * 1 2 3 35 35 H 0.96998 * 120.00044 * 180.27618 * 7 6 4 36 36 H 1.09003 * 109.47316 * 89.99868 * 13 12 2 37 37 H 1.09003 * 109.47269 * 209.99849 * 13 12 2 38 38 H 1.08997 * 109.47335 * 330.00035 * 13 12 2 39 39 H 0.97002 * 119.99900 * 5.04229 * 16 14 12 40 40 H 1.07993 * 120.00072 * 0.02562 * 18 17 16 41 41 H 1.07993 * 120.00064 * 180.27392 * 19 18 17 42 42 H 1.07999 * 126.09005 * 180.12268 * 23 22 21 43 43 H 1.08001 * 120.17983 * 0.04403 * 25 24 23 44 44 H 1.07997 * 119.68643 * 180.02562 * 26 25 24 45 45 H 1.07996 * 119.59889 * 180.02562 * 27 26 25 46 46 H 1.07995 * 120.07663 * 180.02562 * 28 27 26 47 47 H 1.07994 * 120.00306 * 180.02562 * 30 20 19 48 48 H 1.07992 * 120.00012 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5822 -1.6349 1.1335 6 6 1.7900 -0.1802 2.4799 7 7 1.1334 0.9533 2.5971 8 14 2.4009 -1.0679 4.0057 9 1 1.3136 -1.9191 4.5519 10 1 3.5648 -1.9189 3.6506 11 1 2.8101 -0.0712 5.0277 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0872 1.1284 -1.8907 16 7 3.2427 -0.6710 -3.1836 17 6 4.1327 -0.0249 -4.0510 18 6 4.0761 -0.2742 -5.4160 19 6 4.9500 0.3661 -6.2714 20 6 5.8928 1.2518 -5.7657 21 7 6.7833 1.8982 -6.6334 22 7 7.2585 3.2051 -6.4833 23 6 8.0719 3.5005 -7.4576 24 6 8.1574 2.3382 -8.3358 25 6 8.8513 2.0624 -9.5194 26 6 8.7137 0.8414 -10.1135 27 6 7.8920 -0.1295 -9.5540 28 6 7.2053 0.1158 -8.3987 29 6 7.3247 1.3527 -7.7708 30 6 5.9528 1.4971 -4.4000 31 6 5.0757 0.8603 -3.5452 32 1 -0.3634 0.5518 -0.8669 33 1 -0.3634 -1.0267 -0.0444 34 1 -0.3633 0.4749 0.9114 35 1 0.9664 1.3284 3.4759 36 1 0.7374 -2.1443 -1.9993 37 1 2.4627 -2.5818 -1.9865 38 1 1.5294 -2.5968 -0.4709 39 1 2.9499 -1.5758 -3.3748 40 1 3.3457 -0.9659 -5.8088 41 1 4.9031 0.1756 -7.3334 42 1 8.5868 4.4400 -7.5938 43 1 9.4925 2.8115 -9.9600 44 1 9.2492 0.6276 -11.0267 45 1 7.7956 -1.0902 -10.0379 46 1 6.5703 -0.6476 -7.9740 47 1 6.6856 2.1861 -4.0068 48 1 5.1226 1.0508 -2.4833 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096502448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:15 Heat of formation + Delta-G solvation = 109.217956 kcal Electronic energy + Delta-G solvation = -31086.439510 eV Core-core repulsion = 26915.529593 eV Total energy + Delta-G solvation = -4170.909917 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.75959 -40.31995 -38.69933 -37.47357 -35.70921 -34.72635 -33.25945 -32.53016 -31.21047 -30.60131 -30.08007 -29.44002 -27.75243 -26.20798 -25.23475 -23.63079 -23.43715 -23.17913 -22.04967 -21.30693 -20.61832 -19.23480 -18.16411 -17.91123 -17.14492 -17.04296 -16.28625 -15.76521 -15.67144 -15.35750 -15.19348 -15.02591 -14.47752 -14.42033 -14.13530 -13.98231 -13.74259 -13.45635 -13.24479 -13.01738 -12.79383 -12.60514 -12.57908 -12.23995 -12.20462 -11.72625 -11.59572 -11.49451 -11.32492 -11.13579 -11.07776 -10.89484 -10.76111 -10.67217 -10.34141 -10.22174 -9.98664 -9.47467 -9.18877 -9.01647 -8.99612 -8.63120 -8.47339 -7.76313 -7.45867 -6.10949 -4.18488 0.53789 0.94299 1.31244 1.44852 2.09750 2.28057 3.08478 3.24167 3.32236 3.35022 3.44249 3.54663 3.92488 4.16572 4.31941 4.32516 4.46368 4.50354 4.63507 4.77099 4.83736 4.94001 5.02906 5.21620 5.24093 5.29020 5.36606 5.46069 5.49254 5.58527 5.65964 5.87535 5.89093 5.94374 6.01500 6.11898 6.18367 6.19153 6.30808 6.35650 6.52992 6.53882 6.64420 6.74166 6.90171 6.94795 7.09086 7.16627 7.38220 7.39406 7.63801 7.74075 7.97718 8.15209 8.55491 8.82522 9.12820 9.48155 10.95590 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.001799 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.512845 B =15559.343591 C =16070.676801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.271 3.729 3 H 0.069 0.931 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.602 5.602 13 C 0.082 3.918 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.695 5.695 17 C 0.184 3.816 18 C -0.135 4.135 19 C -0.113 4.113 20 C 0.127 3.873 21 N -0.346 5.346 22 N -0.242 5.242 23 C 0.073 3.927 24 C -0.180 4.180 25 C -0.040 4.040 26 C -0.160 4.160 27 C -0.072 4.072 28 C -0.137 4.137 29 C 0.128 3.872 30 C -0.090 4.090 31 C -0.100 4.100 32 H 0.013 0.987 33 H 0.030 0.970 34 H 0.085 0.915 35 H 0.264 0.736 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.404 0.596 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.200 0.800 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.133 0.867 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.836 -3.993 -25.137 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.171 3.829 3 H 0.087 0.913 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.336 5.336 13 C -0.062 4.062 14 C 0.397 3.603 15 O -0.453 6.453 16 N -0.344 5.344 17 C 0.087 3.913 18 C -0.157 4.157 19 C -0.134 4.134 20 C 0.035 3.965 21 N -0.126 5.126 22 N -0.051 5.051 23 C -0.124 4.124 24 C -0.188 4.188 25 C -0.060 4.060 26 C -0.180 4.180 27 C -0.092 4.092 28 C -0.159 4.159 29 C 0.015 3.985 30 C -0.111 4.111 31 C -0.121 4.121 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.241 0.759 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.217 0.783 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.151 0.849 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.253 -2.645 -23.531 26.217 hybrid contribution 0.385 -1.238 0.106 1.301 sum 11.638 -3.883 -23.425 26.444 Atomic orbital electron populations 1.22056 0.98364 0.98949 1.00805 1.18928 0.90501 0.94656 0.78836 0.91289 1.21299 1.36009 1.08975 0.90368 0.92224 1.24903 0.95006 0.94898 0.98980 1.69919 1.40132 1.18243 1.24029 0.86480 0.78982 0.79351 0.82566 1.20671 1.19931 1.21063 1.47631 1.51119 1.11416 1.23459 1.21576 0.98370 0.83515 1.02786 1.16003 0.79788 0.84926 0.79562 1.90903 1.62556 1.15179 1.76627 1.43040 1.48182 1.18363 1.24821 1.17622 0.89793 0.95191 0.88743 1.20628 1.00833 1.03360 0.90863 1.20650 0.94487 0.98462 0.99834 1.17320 0.92685 0.97857 0.88679 1.45444 1.38486 1.09187 1.19501 1.76823 1.12246 0.93925 1.22155 1.25225 0.97155 0.98751 0.91304 1.19942 1.04653 0.94601 0.99601 1.20352 0.96519 0.96865 0.92312 1.20694 1.01835 0.93926 1.01539 1.20766 0.94836 0.99295 0.94346 1.20033 1.04183 0.94427 0.97242 1.18872 0.95690 0.95444 0.88517 1.20836 0.99811 1.00031 0.90389 1.21222 0.92481 0.96740 1.01644 0.96746 0.95104 0.89600 0.92626 0.93776 0.93387 0.89564 0.75926 0.84911 0.85240 0.78303 0.85342 0.85578 0.85254 0.85291 0.84941 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.09 37.16 0.34 -3.00 16 2 C 0.27 6.79 2.53 -69.09 -0.18 6.62 16 3 H 0.07 2.03 6.90 -51.93 -0.36 1.67 16 4 C -0.53 -13.96 8.02 -34.44 -0.28 -14.23 16 5 H 0.06 1.54 7.15 -52.48 -0.38 1.17 16 6 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 7 N -0.89 -24.96 11.74 55.43 0.65 -24.31 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.60 -12.46 2.75 -181.02 -0.50 -12.96 16 13 C 0.08 1.27 9.10 59.84 0.54 1.82 16 14 C 0.70 14.30 8.02 -86.92 -0.70 13.61 16 15 O -0.58 -14.15 13.39 5.29 0.07 -14.08 16 16 N -0.69 -10.74 5.18 -14.19 -0.07 -10.81 16 17 C 0.18 2.75 6.27 -83.62 -0.52 2.23 16 18 C -0.14 -1.61 9.96 -39.42 -0.39 -2.00 16 19 C -0.11 -1.35 8.75 -39.41 -0.34 -1.69 16 20 C 0.13 1.77 6.38 -83.58 -0.53 1.24 16 21 N -0.35 -4.72 3.77 -8.36 -0.03 -4.75 16 22 N -0.24 -3.27 12.14 31.88 0.39 -2.88 16 23 C 0.07 0.74 12.28 -15.12 -0.19 0.55 16 24 C -0.18 -1.85 6.37 -105.19 -0.67 -2.52 16 25 C -0.04 -0.30 10.07 -39.58 -0.40 -0.70 16 26 C -0.16 -1.09 9.97 -39.95 -0.40 -1.49 16 27 C -0.07 -0.52 9.96 -39.90 -0.40 -0.92 16 28 C -0.14 -1.29 9.06 -39.80 -0.36 -1.65 16 29 C 0.13 1.50 6.59 -84.08 -0.55 0.95 16 30 C -0.09 -1.36 9.74 -39.42 -0.38 -1.74 16 31 C -0.10 -1.64 8.65 -39.42 -0.34 -1.98 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.03 0.65 7.59 -51.93 -0.39 0.25 16 34 H 0.09 2.20 6.47 -51.93 -0.34 1.87 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.59 6.44 -51.93 -0.33 0.25 16 38 H 0.09 1.44 6.92 -51.93 -0.36 1.08 16 39 H 0.40 4.82 6.62 -40.82 -0.27 4.55 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 42 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.13 1.06 6.46 -52.49 -0.34 0.72 16 47 H 0.13 1.95 8.05 -52.49 -0.42 1.53 16 48 H 0.15 2.81 6.45 -52.49 -0.34 2.47 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -33.79 396.16 -10.34 -44.13 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.95 Total: 7.15 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -5.84 Total: -3.26 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.43 Total: -55.72 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.07 Total: -14.08 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.79 -10.34 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096502448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.348 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds