Wall clock time and date at job start Tue Mar 31 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47120 * 2 1 4 4 C 1.50694 * 109.47411 * 120.00084 * 2 1 3 5 5 H 1.08004 * 119.99918 * 114.79374 * 4 2 1 6 6 C 1.37879 * 120.00257 * 294.80066 * 4 2 1 7 7 N 1.31516 * 119.99696 * 359.23304 * 6 4 2 8 8 Si 1.86796 * 120.00209 * 179.51019 * 6 4 2 9 9 H 1.48494 * 109.47425 * 264.73743 * 8 6 4 10 10 H 1.48499 * 109.47048 * 24.73834 * 8 6 4 11 11 H 1.48497 * 109.47088 * 144.73336 * 8 6 4 12 12 N 1.46503 * 109.46918 * 240.00182 * 2 1 3 13 13 C 1.46493 * 119.99894 * 299.99913 * 12 2 1 14 14 C 1.34780 * 119.99742 * 119.99819 * 12 2 1 15 15 O 1.21584 * 120.00092 * 0.02562 * 14 12 2 16 16 N 1.34775 * 119.99677 * 179.97438 * 14 12 2 17 17 C 1.40068 * 119.99911 * 185.03826 * 16 14 12 18 18 C 1.38880 * 119.99725 * 213.77233 * 17 16 14 19 19 C 1.38035 * 119.99954 * 179.76781 * 18 17 16 20 20 C 1.38888 * 119.99504 * 0.50905 * 19 18 17 21 21 N 1.40140 * 120.00086 * 179.76526 * 20 19 18 22 22 N 1.39870 * 125.47980 * 144.66538 * 21 20 19 23 23 C 1.30314 * 110.09608 * 179.84166 * 22 21 20 24 24 C 1.45934 * 107.81810 * 0.41793 * 23 22 21 25 25 C 1.39937 * 134.02786 * 179.71809 * 24 23 22 26 26 C 1.36485 * 119.63674 * 180.02562 * 25 24 23 27 27 C 1.38958 * 120.62392 * 359.97438 * 26 25 24 28 28 C 1.36623 * 120.81451 * 359.97438 * 27 26 25 29 29 C 1.37265 * 125.47689 * 324.98380 * 21 20 19 30 30 C 1.38884 * 120.00226 * 359.74313 * 20 19 18 31 31 C 1.38035 * 119.99671 * 0.02562 * 30 20 19 32 32 H 1.08995 * 109.47419 * 57.52128 * 1 2 3 33 33 H 1.09000 * 109.47521 * 177.52647 * 1 2 3 34 34 H 1.09006 * 109.46943 * 297.52278 * 1 2 3 35 35 H 0.96998 * 120.00044 * 180.27618 * 7 6 4 36 36 H 1.09003 * 109.47316 * 89.99868 * 13 12 2 37 37 H 1.09003 * 109.47269 * 209.99849 * 13 12 2 38 38 H 1.08997 * 109.47335 * 330.00035 * 13 12 2 39 39 H 0.97002 * 119.99900 * 5.04229 * 16 14 12 40 40 H 1.07993 * 120.00072 * 0.02562 * 18 17 16 41 41 H 1.07993 * 120.00064 * 180.27392 * 19 18 17 42 42 H 1.07999 * 126.09005 * 180.12268 * 23 22 21 43 43 H 1.08001 * 120.17983 * 0.04403 * 25 24 23 44 44 H 1.07997 * 119.68643 * 180.02562 * 26 25 24 45 45 H 1.07996 * 119.59889 * 180.02562 * 27 26 25 46 46 H 1.07995 * 120.07663 * 180.02562 * 28 27 26 47 47 H 1.07994 * 120.00306 * 180.02562 * 30 20 19 48 48 H 1.07992 * 120.00012 * 179.97438 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5822 -1.6349 1.1335 6 6 1.7900 -0.1802 2.4799 7 7 1.1334 0.9533 2.5971 8 14 2.4009 -1.0679 4.0057 9 1 1.3136 -1.9191 4.5519 10 1 3.5648 -1.9189 3.6506 11 1 2.8101 -0.0712 5.0277 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0872 1.1284 -1.8907 16 7 3.2427 -0.6710 -3.1836 17 6 4.1327 -0.0249 -4.0510 18 6 4.0761 -0.2742 -5.4160 19 6 4.9500 0.3661 -6.2714 20 6 5.8928 1.2518 -5.7657 21 7 6.7833 1.8982 -6.6334 22 7 7.2585 3.2051 -6.4833 23 6 8.0719 3.5005 -7.4576 24 6 8.1574 2.3382 -8.3358 25 6 8.8513 2.0624 -9.5194 26 6 8.7137 0.8414 -10.1135 27 6 7.8920 -0.1295 -9.5540 28 6 7.2053 0.1158 -8.3987 29 6 7.3247 1.3527 -7.7708 30 6 5.9528 1.4971 -4.4000 31 6 5.0757 0.8603 -3.5452 32 1 -0.3634 0.5518 -0.8669 33 1 -0.3634 -1.0267 -0.0444 34 1 -0.3633 0.4749 0.9114 35 1 0.9664 1.3284 3.4759 36 1 0.7374 -2.1443 -1.9993 37 1 2.4627 -2.5818 -1.9865 38 1 1.5294 -2.5968 -0.4709 39 1 2.9499 -1.5758 -3.3748 40 1 3.3457 -0.9659 -5.8088 41 1 4.9031 0.1756 -7.3334 42 1 8.5868 4.4400 -7.5938 43 1 9.4925 2.8115 -9.9600 44 1 9.2492 0.6276 -11.0267 45 1 7.7956 -1.0902 -10.0379 46 1 6.5703 -0.6476 -7.9740 47 1 6.6856 2.1861 -4.0068 48 1 5.1226 1.0508 -2.4833 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096502448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:13 Heat of formation + Delta-G solvation = 89.783845 kcal Electronic energy + Delta-G solvation = -31087.282237 eV Core-core repulsion = 26915.529593 eV Total energy + Delta-G solvation = -4171.752644 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.164 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.55336 -41.70138 -39.91606 -38.18714 -37.32006 -36.12606 -34.84530 -33.83205 -32.26493 -31.59545 -31.03065 -30.75511 -28.82848 -27.60932 -27.28258 -24.76297 -24.31470 -24.00378 -23.17202 -22.49980 -21.59648 -20.78282 -19.41217 -18.90234 -18.62684 -18.08955 -17.85926 -17.06303 -16.82399 -16.31701 -16.29959 -16.05128 -16.03642 -15.51514 -15.25376 -14.92399 -14.86694 -14.57703 -14.38613 -14.32838 -14.15235 -13.90130 -13.79634 -13.54864 -13.08910 -13.02231 -12.90180 -12.81937 -12.74403 -12.64980 -12.47721 -12.26878 -12.12047 -12.00581 -11.92533 -11.62834 -11.23638 -11.12278 -10.99905 -10.54265 -10.11344 -9.71025 -9.64846 -9.29887 -8.49986 -8.15840 -6.31519 -0.27873 0.15974 0.23366 0.65926 1.25367 1.40102 1.42197 1.50047 1.52034 1.69892 2.10382 2.40615 2.67332 2.87452 3.04089 3.14052 3.43610 3.60610 3.76142 3.81474 3.88287 4.07655 4.18658 4.27273 4.33497 4.37901 4.46398 4.50697 4.62736 4.68525 4.70895 4.79682 4.88194 4.90131 4.97080 4.99318 5.03711 5.08066 5.18266 5.20705 5.34351 5.42924 5.46042 5.49578 5.56085 5.61138 5.64979 5.77278 5.93497 5.97952 6.11253 6.20413 6.22746 6.56765 6.77438 7.04847 7.35414 7.59500 8.89749 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.001799 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.512845 B =15559.343591 C =16070.676801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.276 3.724 3 H 0.012 0.988 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.269 1.269 11 H -0.289 1.289 12 N -0.610 5.610 13 C 0.076 3.924 14 C 0.690 3.310 15 O -0.628 6.628 16 N -0.672 5.672 17 C 0.159 3.841 18 C -0.108 4.108 19 C -0.107 4.107 20 C 0.129 3.871 21 N -0.367 5.367 22 N -0.296 5.296 23 C 0.087 3.913 24 C -0.199 4.199 25 C -0.040 4.040 26 C -0.159 4.159 27 C -0.063 4.063 28 C -0.157 4.157 29 C 0.101 3.899 30 C -0.107 4.107 31 C -0.118 4.118 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.424 0.576 40 H 0.176 0.824 41 H 0.158 0.842 42 H 0.236 0.764 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.137 0.863 47 H 0.119 0.881 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.730 -6.922 -29.066 32.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.174 3.826 3 H 0.030 0.970 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.194 1.194 11 H -0.215 1.215 12 N -0.344 5.344 13 C -0.066 4.066 14 C 0.392 3.608 15 O -0.509 6.509 16 N -0.323 5.323 17 C 0.063 3.937 18 C -0.129 4.129 19 C -0.128 4.128 20 C 0.037 3.963 21 N -0.148 5.148 22 N -0.106 5.106 23 C -0.110 4.110 24 C -0.207 4.207 25 C -0.060 4.060 26 C -0.178 4.178 27 C -0.083 4.083 28 C -0.178 4.178 29 C -0.010 4.010 30 C -0.128 4.128 31 C -0.139 4.139 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.264 0.736 40 H 0.193 0.807 41 H 0.176 0.824 42 H 0.252 0.748 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.178 0.822 46 H 0.155 0.845 47 H 0.138 0.862 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.162 -5.647 -27.530 30.622 hybrid contribution 0.298 -0.278 1.057 1.133 sum 12.460 -5.924 -26.473 29.852 Atomic orbital electron populations 1.21831 0.97051 1.00076 0.99674 1.18486 0.91402 0.92186 0.80553 0.97047 1.21583 1.35751 1.09022 0.91086 0.91780 1.25764 0.95228 0.95595 1.02131 1.70068 1.41375 1.19731 1.24598 0.85434 0.78777 0.78128 0.78605 1.19222 1.19393 1.21484 1.47470 1.51231 1.13324 1.22331 1.21864 1.01080 0.80393 1.03271 1.16183 0.79567 0.84459 0.80588 1.90874 1.64227 1.17785 1.77977 1.42597 1.47572 1.18883 1.23240 1.17767 0.89889 0.96049 0.90022 1.20973 1.00522 1.02471 0.88894 1.20971 0.93292 0.97333 1.01173 1.17524 0.92915 0.97648 0.88235 1.45457 1.39475 1.09564 1.20324 1.76776 1.14602 0.94819 1.24388 1.25944 0.95248 0.99906 0.89909 1.20293 1.05342 0.94295 1.00743 1.20764 0.96020 0.98059 0.91125 1.21164 1.01127 0.93249 1.02228 1.21217 0.93271 1.00617 0.93185 1.20295 1.05465 0.93868 0.98220 1.19365 0.96465 0.96892 0.88290 1.20695 1.00010 1.00664 0.91430 1.20964 0.94382 0.98554 1.00035 0.96096 0.92780 0.92302 0.92706 0.91088 0.89686 0.90592 0.73572 0.80692 0.82432 0.74764 0.82426 0.82405 0.82213 0.84495 0.86246 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 9.09 71.98 0.65 -5.43 16 2 C 0.28 14.41 2.53 44.24 0.11 14.53 16 3 H 0.01 0.73 6.90 -2.39 -0.02 0.71 16 4 C -0.54 -29.02 8.02 25.60 0.21 -28.81 16 5 H 0.06 3.33 7.15 -2.91 -0.02 3.31 16 6 C 0.01 0.69 5.31 84.65 0.45 1.13 16 7 N -0.92 -53.88 11.74 21.45 0.25 -53.62 16 8 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 N -0.61 -25.58 2.75 -844.87 -2.33 -27.91 16 13 C 0.08 2.22 9.10 127.77 1.16 3.38 16 14 C 0.69 29.40 8.02 179.05 1.44 30.84 16 15 O -0.63 -33.34 13.39 -3.98 -0.05 -33.40 16 16 N -0.67 -20.45 5.18 -317.07 -1.64 -22.09 16 17 C 0.16 4.80 6.27 38.13 0.24 5.04 16 18 C -0.11 -2.32 9.96 22.38 0.22 -2.09 16 19 C -0.11 -2.38 8.75 22.38 0.20 -2.18 16 20 C 0.13 3.72 6.38 38.12 0.24 3.96 16 21 N -0.37 -10.23 3.77 -180.35 -0.68 -10.91 16 22 N -0.30 -8.33 12.14 -53.05 -0.64 -8.98 16 23 C 0.09 1.71 12.28 86.91 1.07 2.78 16 24 C -0.20 -3.79 6.37 -20.23 -0.13 -3.91 16 25 C -0.04 -0.47 10.07 22.27 0.22 -0.24 16 26 C -0.16 -1.49 9.97 22.03 0.22 -1.27 16 27 C -0.06 -0.67 9.96 22.06 0.22 -0.45 16 28 C -0.16 -2.58 9.06 22.13 0.20 -2.38 16 29 C 0.10 2.29 6.59 39.17 0.26 2.54 16 30 C -0.11 -3.55 9.74 22.38 0.22 -3.33 16 31 C -0.12 -4.24 8.65 22.37 0.19 -4.04 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 2.27 7.59 -2.39 -0.02 2.25 16 34 H 0.06 3.12 6.47 -2.38 -0.02 3.11 16 35 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.82 6.44 -2.39 -0.02 1.80 16 38 H 0.08 2.40 6.92 -2.39 -0.02 2.39 16 39 H 0.42 9.03 6.62 -92.71 -0.61 8.42 16 40 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.16 2.63 6.30 -2.91 -0.02 2.61 16 42 H 0.24 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 44 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 45 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 46 H 0.14 1.89 6.46 -2.91 -0.02 1.87 16 47 H 0.12 4.07 8.05 -2.91 -0.02 4.05 16 48 H 0.11 4.76 6.45 -2.91 -0.02 4.74 16 Total: -1.00 -81.94 396.16 4.72 -77.22 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.40 Total: 24.25 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.39 Total: 10.05 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -5.04 Total: -123.51 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.05 Total: -33.40 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -81.94 4.72 -77.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096502448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.001 kcal (2) G-P(sol) polarization free energy of solvation -81.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds